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32
datasets available to search
ShareScore release 0.9.0
Dataset results
32 results for “open-access”
dbMMR-Chinese database: the open-access database for variants in mismatch repair genes in Chinese population
<p>Mutation in mismatch repair genes (MMR) is the genetic predisposition for gastrointestinal cancer represented by the Lynch Syndrome. Identification of the mutation carrier is critical in prevention and treatment of the cancer. Chinese is the largest ethnic population with the largestgastrointestinal cancer cases in the world, but systematic knowledge for the mutation in MMR is lack in Chinese population. Through comprehensive data mining, we collected nearly all MMR data derived from 33,998 Chinese of 23,938 cancer and 10,060 non-cancer cases reported from 1997 to 2019. Upon standardization and re-annotation, the data following international standards, we identified a total of 540 distinct MMR variants including 487 single base change and indel, and 53 large deletion/duplication in four MMR genes of <em>MLH1</em>, <em>MSH2</em>, <em>MSH6</em>and <em>PMS2</em>; 153 of the variants were classified as Pathogenic or Likely Pathogenic. This MMR dataset is the largest collection from a single, non-Caucasian population. We developed an open-access database, dbMMR-Chinese (<a href="https://dbmmr-chinese.fhs.um.edu.mo/">https://dbMMR-chinese.fhs.um.edu.mo</a>), to share with community for MMR mutation-related cancer study and clinical application.</p>
In-Silico Mass Spectra for Compounds in the Metabolon's Annotation List (Open-Access)
<div> <p>In-silico spectra (+ve mode, M+H) were generated for Metabolon's data dictionary ( https://zenodo.org/records/10974865 ) using the ICEBERG model, re-trained using MONA/GNPS/NIST2020 spectra. </p> <p>Disclaimer: These are simulated spectra so they should be used with cautions to annotate compounds in LC-HRMS datasets. </p> <p> </p> </div>
The Threatened Species No-Go Mapping Tool: An online open-access land-use decision support tool that identifies areas of importance for highly sensitive species of conservation concern
Open the record for dataset details and reuse information.
PatCID: an open-access database of chemical structures in patent documents
<p>PatCID is a chemical-structure database automatically created from images in patent documents. It contains 13M unique molecules, 80M molecule images, and 1.2M annotated documents from the United States (USPTO), Europe (EPO), Japan (JPO), Korea (KIPO), and China (CNIPA).</p> <p>Leveraging state-of-the-art document understanding models, PatCID enables accurate document and molecule retrieval in patents.</p> <p>Examples of how to use PatCID can be found on the <a href="https://github.com/DS4SD/PatCID">PatCID GitHub repository</a> </p>
FIGURE 1. A in DigApp and TaphonomApp: Two new open-access palaeontological and archaeological mobile apps
FIGURE 1. A, DigApp Online "Home" screen. B, DigApp Online "New Specimen" screen. C, DigApp Online "View Specimens" screen.
Figure 2 from: Erwin T, Stoev P, Penev L (2018) ZooKeys anniversary: 10 years of leadership toward open-access publishing of zoological data and establishment at Pensoft of like-minded sister journals across the biodiversity spectrum. ZooKeys 770: 1-8. https://doi.org/10.3897/zookeys.770.28105
Figure 2 New taxa published in ZooKeys, registered in ZooBank (courtesy of Richard Pyle; *until 27.6.2018).
Figure 1 from: Erwin T, Stoev P, Penev L (2018) ZooKeys anniversary: 10 years of leadership toward open-access publishing of zoological data and establishment at Pensoft of like-minded sister journals across the biodiversity spectrum. ZooKeys 770: 1-8. https://doi.org/10.3897/zookeys.770.28105
Figure 1 Growth of submitted manuscripts and published articles in ZooKeys from 2008 to 2018 (*until 27.6.2018).
Figure 3 from: Erwin T, Stoev P, Penev L (2018) ZooKeys anniversary: 10 years of leadership toward open-access publishing of zoological data and establishment at Pensoft of like-minded sister journals across the biodiversity spectrum. ZooKeys 770: 1-8. https://doi.org/10.3897/zookeys.770.28105
Figure 3 Total number of ZooKeys mentions in social media and popular magazines (Altmetric, June 2018).
Biodiversidata: An Open-Access Biodiversity Database for Uruguay
<p>We present a comprehensive database of tetrapod occurrence records native from Uruguay, with the latest taxonomic updates and geographic location accuracy. The dataset provides primary biodiversity data on extant Amphibia, Reptilia, Aves and Mammalia species recorded within the country area. The total number of records collated is 69,380, including 673 species. This is the largest and most geographically and taxonomically comprehensive database of Uruguayan tetrapod species available to date, and it represents the first open repository for the country.</p>
A verified open-access AI-based chemical microparticle image database for in-situ particle visualization and quantification in multi-phase flow
<p>This report provided a new method and idea for the detection, segmentation, classification, and quantitative analysis of four dispersed phase particles - "DPPs" (agglomeration, bubble, crystal, and droplet) in chemical multi-phase flow processes.</p>
Accuracy of Digital Models Using Open-access Software Programs
ClinicalTrials.gov study NCT06035432. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Receiver Function Open-Access Dataset for the European Alps
<p>This dataset comprises of the receiver function traces calculated using seismic waveform data from the <a href="http://www.alparray.ethz.ch/en/home/">AlpArray Seismic Network</a>, three other temporary seismic networks, and permanent stations in the broader European Alpine region. We use this dataset to compile a new Moho depth map for the broader European Alps.</p> <p>In particular, we include:</p> <ol> <li>the radial receiver function traces in .SAC format (RRF.zip). One SAC trace per station and teleseismic earthquake. </li> <li>the transverse (TRF.zip) traces in .SAC format. </li> <li>the receiver function stacks from all the seismic stations plotted versus back-azimuth in .png format (RRF_plots.zip and TRF_plots.zip)</li> </ol> <p>For details on how to read and process the receiver function traces have a look at the README file of the repository.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.