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82 results for “phylogram”
FIGURE. Maximum likelihood phylogram of Multiclavula spp. based on ITS sequences. Rooted to Clavulina cristata. Bar = estimated changes/nucleotide. Support values above or below branches: Bayesian posterior probability/maximum likelihood bootstrap. in New and interesting species of Agaricomycetes from Panama
FIGURE. Maximum likelihood phylogram of Multiclavula spp. based on ITS sequences. Rooted to Clavulina cristata. Bar = estimated changes/nucleotide. Support values above or below branches: Bayesian posterior probability/maximum likelihood bootstrap.
FIGURE. Maximum likelihood phylogram of Humidicutis spp. based on ITS sequences. Rooted to Humidicutis marginata. Bar = estimated changes/nucleotide. Support values above or below branches: Bayesian posterior probability/maximum likelihood bootstrap. in New and interesting species of Agaricomycetes from Panama
FIGURE. Maximum likelihood phylogram of Humidicutis spp. based on ITS sequences. Rooted to Humidicutis marginata. Bar = estimated changes/nucleotide. Support values above or below branches: Bayesian posterior probability/maximum likelihood bootstrap.
FIGURE. Bayesian MCMC phylogram of Gliophorus spp. based on ITS sequences. Rooted to Hygrophorus pudorinus. Bar = estimated changes/nucleotide. Support values above or below branches: Bayesian posterior probability/maximum likelihood bootstrap. in New and interesting species of Agaricomycetes from Panama
FIGURE. Bayesian MCMC phylogram of Gliophorus spp. based on ITS sequences. Rooted to Hygrophorus pudorinus. Bar = estimated changes/nucleotide. Support values above or below branches: Bayesian posterior probability/maximum likelihood bootstrap.
FIGURE 1. Phylogram inferred from a in Tylopilus yangzhuliangii (Boletaceae, Boletales), a new bolete from tropical China
FIGURE 1. Phylogram inferred from a combined (28S, ITS and TEF1) dataset using RAxML. BS ≥ 50% and PP ≥ 0.95 are indicated above or below the branches as RAxML BS/PP.
FIGURE 2. Phylogram inferred from a in Two new species of Butyriboletus from China
FIGURE 2. Phylogram inferred from a multilocus (nrLSU+tef1-a+rpb2) dataset by using MrBayes (3.1.2). BS ≥ 50 % and PP ≥ 0.95 are indicated above or below the branches as BS/PP. The new species are in bold.
FIGURE 2. Phylogram inferred from a in Boletus littoreus (Boletaceae, Boletales), a new species with a white basidioma from Hainan, China
FIGURE 2. Phylogram inferred from a combined dataset (28S, TEF1, and RPB2) using RAxML. RAxML likelihood bootstrap (BS ≥ 50 %) and Bayesian posterior probabilities (PP ≥ 0.95) are indicated above or below the branches as RAxML BS/PP.
FIGURE 1. Phylogram inferred from a in Boletellus putuoensis (Boletaceae, Boletales), a new bolete from subtropical China
FIGURE 1. Phylogram inferred from a combined dataset (28S, TEF1, and RPB2) using RAxML. RAxML likelihood bootstrap (BS ≥ 50 %) and Bayesian posterior probabilities (PP ≥ 0.95) are indicated above or below the branches as RAxML BS/PP. The new species is in bold.
FIGURE 1. Maximum likelihood phylogram inferred from 53 taxa from ITS and 28S in Expanding the diversity of mucoralean fungi from northern Thailand: novel Backusella species from soil
FIGURE 1. Maximum likelihood phylogram inferred from 53 taxa from ITS and 28S genetic markers. Bootstrap support (BS) from RAxML and IQ-tree, and the posterior probability from Bayesian analysis are provided near the nodes as BS/BS (IQ-tree)/ PP. Values <70% for bootstrap support and <0.80 for posterior probability are indicated by a minus sign (–). Unrecovered branching is indicated by (*) sign. The novel strain proposed in the current study is shown in bold. T, ET, LT, and NT indicate ex-type, ex-epitype, ex-lectotype and ex-neotype strains, respectively. Mucor indicus (CBS 226.29) and M. koreanus (EML-QT1) were used as outgroup taxa.
FIGURE 2. Phylogram inferred from a in Morphological and phylogenetic evidence reveal three new species of Aureoboletus (Boletaceae, Boletales) from China
FIGURE 2. Phylogram inferred from a three-locus (28S, TEF1 and RPB2) dataset using RAxML. BS ≥ 70% and PP ≥ 0.95 are indicated above or below the branches as RAxML BS/PP. SW, southwest; SE, southeast; NE, northeast.
FIGURE 2. Phylogram obtained from a in Bazzania calypogeoides (Marchantiophyta)-a peculiar new taxon from Eastern Hengduan (China)
FIGURE 2. Phylogram obtained from a Bayesian analysis of the genus Bazzania based on trnT‒trnF dataset. Newly obtained specimens are provided with voucher numbers. Bootstrap support values> 50% in ML analysis and Bayesian posterior probabilities (PP)> 0.50 are indicated. Scale bar denotes the number of nucleotide substitutions per site. Bazzania subtilis in the tree is in "sensu Meagher" is kept for B. helgana U. Schwarz, Schäf.-Verw. & Shevock by Schwarz et al. (2023: 11).
FIGURE 1. The phylogram inferred from a in Auricularia thailandica sp. nov. (Auriculariaceae, Auriculariales) a widely distributed species from Southeastern Asia
FIGURE 1. The phylogram inferred from a Maximum Likelihood analysis of ITS sequences of Auricularia. Species names are followed by the herbarium code or collection code or GenBank accession number. RAxML/ Bayesian posterior probabilities / MP bootstrap values ≥70 % are displayed above or below each node. The tree is rooted with Exidia recisa (MW315) and Exidiopsis sp. (FO46291).
FIGURE 1. Phylogram generated for Curvularia from a in A taxonomic and phylogenetic re-appraisal of the genus Curvularia (Pleosporaceae): human and plant pathogens
FIGURE 1. Phylogram generated for Curvularia from a maximum likelihood analysis based on the combined ITS, GPDH and TEF alignment. Maximum likelihood bootstrap values are shown above the branches. The thickened branches correspond to Bayesian posterior probability values more than 0.7. All ex-type cultures are printed in bold.
FIGURE 1. Bayesian phylogram obtained from general rpb1 in Strobilomyces pteroreticulosporus (Boletales), a new species of the S. strobilaceus complex from the Republic of Korea and remarks on the variability of S. confusus
FIGURE 1. Bayesian phylogram obtained from general rpb1 sequence alignment. Porphyrellus porphyrosporus was used as outgroup taxon. Support values in either Bayesian (Posterior Probabilities values, BPP) or maximum likelihood (ML Bootstrap percentage, MLB) analyses are indicated. Only BPP values over 0.70 and MLB values over 50 % are given above clade branches. Newly sequenced collections are in bold.
FIGURE 2. Bayesian phylogram obtained from general ITS2 in Strobilomyces pteroreticulosporus (Boletales), a new species of the S. strobilaceus complex from the Republic of Korea and remarks on the variability of S. confusus
FIGURE 2. Bayesian phylogram obtained from general ITS2 sequence alignment. Porphyrellus porphyrosporus was used as outgroup taxon. Support values in either Bayesian (Posterior Probabilities values, BPP) or maximum likelihood (ML Bootstrap percentage, MLB) analyses are indicated. Only BPP values over 0.70 and MLB values over 50 % are given above clade branches. Newly sequenced collections are in bold.
FIGURE 1. Phylogram inferred from a in A new species and a new combination in the genus Aureoboletus (Boletales, Boletaceae) from southern China
FIGURE 1. Phylogram inferred from a combined dataset (nrLSU, tef1-a and rpb1) using RAxML. RAxML likelihood bootstrap (BS ≥ 50 %) and Bayesian posterior probabilities (PP ≥ 0.95) are indicated above the branches as RAxML BS/PP.
FIGURE 1. Phylogram inferred from a in Butyriboletus hainanensis (Boletaceae, Boletales), a new species from tropical China
FIGURE 1. Phylogram inferred from a multilocus (rDNA 28S and tef1a, and rpb2) dataset using RAxML. BS ≥ 50 %and PP ≥ 0.95 are indicated above or below the branches as RAxML BS/PP.
FIGURE 1. Phylogram inferred from a in The genus Xanthoconium (Boletaceae, Boletales) in tropical China
FIGURE 1. Phylogram inferred from a multilocus (rDNA 28S and TEF1, and RPB2) dataset using RAxML. BS ≥ 70 %and PP ≥ 0.95 are indicated above or below the branches as RAxML BS/PP.
FIGURE 37. Maximum likelihood phylogram inferred from a in Entomoneis tenera sp. nov., a new marine planktonic diatom (Entomoneidaceae, Bacillariophyta) from the Adriatic Sea
FIGURE 37. Maximum likelihood phylogram inferred from a concatenated dataset of two markers: rbcL and psbC. Branch support is summarized above branches as ML Bayesian posterior probabilities (BPP)/bootstrap values (BS). Taxon labels are indicated as name (in italic) strain (in bold). Canal raphe bearing diatoms (Surirellales, Rhopalodiales and Bacilarialles) are indicated on the right side of phylogram. ML tree is based on GTR+G+I evolutionary model with 1,000 bootstrap replicates and 40M Bayesian generations. The tree is rooted with Eunotia glacialis (FD46) and Eunotia pectinalis (NIES461). BPP/BS values of 1.0/100 are indicated with asterisk (*) and values below 0.5/50 are indicated with dash (-).
FIGURE 36. Maximum likelihood phylogram inferred from a in Entomoneis tenera sp. nov., a new marine planktonic diatom (Entomoneidaceae, Bacillariophyta) from the Adriatic Sea
FIGURE 36. Maximum likelihood phylogram inferred from a concatenated dataset of three markers: SSU, rbcL and psbC. Branch support is summarized above branches as ML Bayesian posterior probabilities (BPP)/bootstrap values (BS). Taxon labels are indicated as name (in italic) strain (in bold). Canal raphe bearing diatoms (Surirellales, Rhopalodiales and Bacilarialles) are indicated on the right side of phylogram. ML tree is based on GTR+G+I evolutionary model with 1,000 bootstrap replicates and 60M Bayesian generations. The tree is rooted with Eunotia glacialis (FD46) and Eunotia pectinalis (NIES461). BPP/BS values of 1.0/100 are indicated with asterisk (*) and values below 0.5/50 are indicated with dash (-).
FIGURE 1. The phylogram inferred from a in A new species of Obba (Polyporales, Basidiomycota) from Thailand
FIGURE 1. The phylogram inferred from a Maximum Likelihood analysis of ITS sequences of Obba and related genera to show the phylogenetic position of Obba thailandica. The voucher number and origin, if available, of each taxon of Obba are labeled. The topology is inferred from the maximum likelihood algorithms, and the statistical values labeled on the branches are calculated from the maximum likelihood and Bayesian inference algorithms. The newly sequenced taxa are in boldface.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.