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Figure S47 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S47. Ancestral range estimation of Caesalpinioideae, performed using BioGeoBEARS with the best-fitting model (i.e., DEC+J). Trans-oceanic dispersal events in the Mimosoid clade, based on a model with seven regions, are indicated with numbered green circles.
Figure S46 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S46. Optimisation of dry season length across the Mimosoid phylogeny. Inset shows the fraction of dry season length niche shifs per speciation event through time. See caption Figure 1 for explanation.
Figure S45 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S45. Variation partitioning results obtained using the genus-level Mimosoid phylogeny (rather than the metachronogram). See caption Figure 2 for explanation.
Figure S42 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S42. Phyloregionalization per continent using the metachronogram, showing global distribution of isohyets. Caption otherwise as for Figure 3.
Figure S30 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S30 (right). Conflict and concordance among the 821 single-copy gene trees for each bipartition mapped onto the single-copy genes ASTRAL species tree (Figure S14). Pie charts show the fraction of gene trees supporting that bipartition in blue, the fraction of gene trees supporting the most likely alternative configuration in green, the fraction of gene trees supporting additional conflicting configurations in red, and the fraction of uninformative gene trees in grey. Numbers above and below the pie charts indicate the total number of gene trees supporting and conflicting the bipartition, respectively. Branch lengths are set equal for easier visualisation.
Figure S22 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S22. Phylogeny of Caesalpinioideae. RAxML species tree based on the amino acid alignment of all genes with orthology assessment. Bootstrap support values are only shown for nodes with <100% bootstrap support.
Figure S27 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S27. Tanglegram comparing the PhyloBayes phylogeny (Figure S23) with the RAxML amino acid single-copy genes phylogeny (Figure S20).
Figure S37 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S37. Phyloregionalization of South America using the metachronogram. Subfigures show clustering results with two to eight phyloregions, as well as the results of phyloregionalization analyses using the geographic residuals of phylogenetic turnover, and ancient phylogenetic turnover with a cut-off of 5, 10, and 20 million years.
Figure S21 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S21. Phylogeny of Caesalpinioideae. RAxML species tree based on the amino acid alignment of all genes without orthology assessment. Bootstrap support values are only shown for nodes with <100% bootstrap support.
Figure S38 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S38. Phyloregionalization of Africa using the metachronogram. Subfigures show clustering results with two to eight phyloregions, as well as the results of phyloregionalization analyses using the geographic residuals of phylogenetic turnover, and ancient phylogenetic turnover with a cut-off of 5, 10, and 20 million years.
Figure S43 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S43. Climatic distinctiveness of phyloregions. Each subplot shows, for phyloregionalization analyses with two to eight phyloregions performed using the metachronogram, how many of the resulting phyloregions have statistically significant different climatic values from the other regions based on mean annual precipitation (P), precipitation seasonality (Pseas), and dry season length.
Figure S34 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S34. Metachronogram with the names and locations of all subtrees (coloured branches) that were grafed onto the phylogenomic backbone (black branches).
Figure S19 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S19. Phylogeny of Caesalpinioideae. RAxML species tree based on the nucleotide alignment of all genes with orthology assessment. Bootstrap support values are only shown for nodes with <100% bootstrap support.
Figure S24 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S24. Tanglegram comparing the ASTRAL single-copy genes phylogeny (Figure S14) with the RAxML nucleotide single-copy genes phylogeny (Figure S17).
Figure S18 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S18. Phylogeny of Caesalpinioideae. RAxML species tree based on the nucleotide alignment of all genes without orthology assessment. Bootstrap support values are only shown for nodes with <100% bootstrap support.
Figure S20 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S20. Phylogeny of Caesalpinioideae. RAxML species tree based on the amino acid single-copy genes alignment. Bootstrap support values are only shown for nodes with <100% bootstrap support.
Figure S17 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S17. Phylogeny of Caesalpinioideae. RAxML species tree based on the nucleotide single-copy genes alignment. Bootstrap support values are only shown for nodes with <100% bootstrap support.
Figure S16 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S16. Phylogeny of Caesalpinioideae. ASTRAL species tree based on the 821 single-copy gene trees and the 665 ortholog trees resulting from orthology assessment. Local posterior probability support values are only shown for nodes with a local posterior probability <1. Branch lengths are expressed in coalescent units. Terminal branches were assigned an arbitrary uniform length for visual clarity.
Figure S15 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S15. Phylogeny of Caesalpinioideae. ASTRAL species tree based on the 821 single-copy gene trees and the 165 multi-copy gene trees without orthology assessment. Local posterior probability support values are only shown for nodes with a local posterior probability <1. Branch lengths are expressed in coalescent units. Terminal branches were assigned an arbitrary uniform length for visual clarity.
Figure S29 in Supplementary Materials for Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
Figure S29 (lef). Chloroplast gene tree for Caesalpinioideae based on analysis of 72 plastid genes using RAxML. All nodes have maximal bootstrap support except those labelled with actual support values <100%.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.