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Fig. 1 in Phylogeny and systematics of the "Pronophila clade,″ with 2 new genera to resolve the formerly polyphyletic genus Pseudomaniola (Lepidoptera: Nymphalidae:

Fig. 1. TE-based maximum likelihood tree indicating the position of the genera Fahraeusia n. gen., Boyeriana n. gen., and Pseudomaniola stat. rev. in the phylogeny of the Pronophila clade.

Fig. 10 in Phylogeny and systematics of the "Pronophila clade,″ with 2 new genera to resolve the formerly polyphyletic genus Pseudomaniola (Lepidoptera: Nymphalidae:

Fig. 10. Adults (ventral view): A) Boyeriana mirabilis male (S Peru, Peru), B) Boyeriana extrema male (N Peru, Amazonas), C) Boyeriana gerlinda male (C Bolivia, Cochabamba), D) Boyeriana gerlinda male (SC Peru, Apurimac), E) Boyeriana clethra male (C Peru, Junin), F) Boyeriana mena male (C Bolivia, Cochabamba), G) Boyeriana ilsa male (NW Ecuador, Carchi), H) Boyeriana loxo male (C Ecuador,Tungurahua).

Fig. 6 in Phylogeny and systematics of the "Pronophila clade,″ with 2 new genera to resolve the formerly polyphyletic genus Pseudomaniola (Lepidoptera: Nymphalidae:

Fig. 6. Female genitalia (top: lateral view), lamellae (bottom: ventral view):A) Fahraeusia asuba (prep. genit. H368), B) Pseudomaniola gigas (prep. genit. H380), C) Pseudomaniola phaselis (prep. genit. H376), D) Pseudomaniola rogersi (prep. genit. H377), E) Boyeriana extrema (prep. genit. H370), F) Boyeriana loxo (prep. genit. H364).

Fig. 9 in Phylogeny and systematics of the "Pronophila clade,″ with 2 new genera to resolve the formerly polyphyletic genus Pseudomaniola (Lepidoptera: Nymphalidae:

Fig. 9. Male genitalia (lateral view), aedeagus (lateral and dorsal view): A) Boyeriana mirabilis (prep. genit. H371), B) Boyeriana extrema (prep. genit. H369), C) Boyeriana mena (prep. genit. H373), D) Boyeriana clethra (prep. genit. H366), E) Boyeriana loxo (prep. genit. H363), F) Boyeriana ilsa (prep. genit. H365).

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Supplementary material 2 from: Leblanc L, San Jose M, Barr N, Rubinoff D (2015) A phylogenetic assessment of the polyphyletic nature and intraspecific color polymorphism in the Bactrocera dorsalis complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 339-367. https://doi.org/10.3897/zookeys.540.9786

Figure S2: Explanation note: Maximum likelihood tree, based the EF-1α gene dataset. Support values above branches are Maximum Likelihood Bootstrap values / Bayesian Posterior Probabilities. Scale bar indicates the number of substitutions per site. Species in the Oriental fruit fly complex are outlined in red.

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Supplementary material 1 from: Leblanc L, San Jose M, Barr N, Rubinoff D (2015) A phylogenetic assessment of the polyphyletic nature and intraspecific color polymorphism in the Bactrocera dorsalis complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 339-367. https://doi.org/10.3897/zookeys.540.9786

Figure S1: Explanation note: Maximum likelihood tree, based the COI gene dataset. Support values above branches are Maximum Likelihood Bootstrap values / Bayesian Posterior Probabilities. Scale bar indicates the number of substitutions per site. Species in the Oriental fruit fly complex are outlined in red.

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Supplementary material 3 from: Leblanc L, San Jose M, Barr N, Rubinoff D (2015) A phylogenetic assessment of the polyphyletic nature and intraspecific color polymorphism in the Bactrocera dorsalis complex (Diptera, Tephritidae). In: De Meyer M, Clarke AR, Vera MT, Hendrichs J (Eds) Resolution of Cryptic Species Complexes of Tephritid Pests to Enhance SIT Application and Facilitate International Trade. ZooKeys 540: 339-367. https://doi.org/10.3897/zookeys.540.9786

Figure S3: Explanation note: Maximum likelihood tree, based the period gene dataset. Support values above branches are Maximum Likelihood Bootstrap values / Bayesian Posterior Probabilities. Scale bar indicates the number of substitutions per site. Species in the Oriental fruit fly complex are outlined in red.

FIGURE 2 in Polyphasic characterization of four species of Pseudanabaena (Oscillatoriales, Cyanobacteria) from China and insights into polyphyletic divergence within the Pseudanabaena genus

FIGURE 2. Ultrastructure of Pseudanabaena. A. Pseudanabaena mucicola CHAB1147. B–C, Pseudanabaena galeata CHAB2916.. D, E. Pseudanabaena limnetica CHAB792. F, G. Pseudanabaena minima CHAB705. Scale bar = 1μm. Thylakoids are marked with T. Phycocyanin granules are marked with PC, and polyphosphate granules with PP.

FIGURE 4 in Polyphasic characterization of four species of Pseudanabaena (Oscillatoriales, Cyanobacteria) from China and insights into polyphyletic divergence within the Pseudanabaena genus

FIGURE 4. Neighbor-joining (NJ) tree showing phylogenetic relationships between Pseudanabaena and other cyanobacteria based on 16S rRNA gene sequences of 73 strains of Oscillatoriales with 1124 bp nucleotides. Bootstrap values greater than 50% with NJ/ML/Bayes methods are shown on the tree. New isolated strains in this study are shown in bold. Microcystis aeruginosa NIES843 (NR074314) was used as outgroup. The vertical lines were used to represent species or cluster of Pseudanabaena genus. I: real Pseudanabaena cluster. II, III, and IV: the other Pseudanabaena strains outside the real Pseudanabaena cluster.

FIGURE 3 in Polyphasic characterization of four species of Pseudanabaena (Oscillatoriales, Cyanobacteria) from China and insights into polyphyletic divergence within the Pseudanabaena genus

FIGURE 3. The absorption spectra of 11 Pseudanabaena strains. A. The absorption spectra of the representative strains (Pseudanabaena mucicola CHAB1147, Pseudanabaena galeata CHAB732, Pseudanabaena minima CHAB705, and Pseudanabaena limnetica CHAB 792). B. The Phycoerythrin (PE) absorption spectrum of the strain Pseudanabaena galeata CHAB732.

FIGURE 1 in Polyphasic characterization of four species of Pseudanabaena (Oscillatoriales, Cyanobacteria) from China and insights into polyphyletic divergence within the Pseudanabaena genus

FIGURE 1. Morphological features of Pseudanabaena. A. Pseudanabaena mucicola CHAB1147. B, Pseudanabaena galeata CHAB2916. C. Pseudanabaena limnetica CHAB792. D. Pseudanabaena minima CHAB705. Scale bar = 10μm.

FIGURE 5 in Neotypification of Pleurocapsa fuliginosa and epitypification of P. minor (Pleurocapsales): resolving a polyphyletic cyanobacterial genus

FIGURE 5. Light microphotographs of the epitype of the Pleurocapsa minor HA4230-MV1 from Hawaii: (A) Stages of germination; (B) Young subcolonies, derived from baeocytes, and initial stages of pseudodichotomously branched pseudofilaments (indicated with arrow); (C) Mature stages with defined rows of the cells, and clear pseudodichotomous branches; (D) Older stages with yellowish-orange, more or less robust sheaths. Scale bar equals 10 μm.

FIGURE 2. Collapsed 16S in Neotypification of Pleurocapsa fuliginosa and epitypification of P. minor (Pleurocapsales): resolving a polyphyletic cyanobacterial genus

FIGURE 2. Collapsed 16S rRNA gene phylogeny of Pleurocapsales based on 253 OTUs with maximum length of 1,483 bp. Support values are shown as BI. Nodes lacking support are indicated by "–". The entire uncollapsed tree can be found in the Supplementary Materials as Fig. S1. Strains we consider to be correctly identified and representative of the genus are followed by an asterisk. Taxa which need revision are placed in the quotes.

FIGURE 4 in Neotypification of Pleurocapsa fuliginosa and epitypification of P. minor (Pleurocapsales): resolving a polyphyletic cyanobacterial genus

FIGURE 4. Light photomicrographs of Pleurocapsa spp.: (A) P. fuliginosa from neotype material, note pseudofilaments as well as peripheral and irregular thylakoid arrengment; (B) P. minor from Grand Staircase-Escalante National Monument (cultured isolates), with classical morphology for that taxon, which is formation of long pseudofilaments, and pseudodichotomous branchings. Scale bar equals 10 μm.

FIGURE 3 in Neotypification of Pleurocapsa fuliginosa and epitypification of P. minor (Pleurocapsales): resolving a polyphyletic cyanobacterial genus

FIGURE 3. Secondary structures of conserved domains in the 16S–23S ITS region. A–G. D1-D1' helices for four strains; alternative structures for the same strain are indicated with equilibrium arrows. H–J. V2 helices situated between tRNAIle and tRNAAla genes. K–M. Box-B anti-terminator helix. N–O. End region of 16S–23S ITS showing D4 helices (yellow), V3-helices (purple), D5 region (green), and position of attachment of 23S rRNA gene within the D5, with 3' end of 16S–23S ITS paired to 5' end of 23S–5S ITS.

FIGURE 1 in Neotypification of Pleurocapsa fuliginosa and epitypification of P. minor (Pleurocapsales): resolving a polyphyletic cyanobacterial genus

FIGURE 1. Line drawings of the type species of genus Pleurocapsa, P. fuliginosa: (A) Copy of P. fuliginosa from original publication (Shalygin after Hauck 1885); (B) Original images of P. fuliginosa from the neotype from Hawaii archipelago (cultural material) with additional morphological trait-pseudofilaments. Scale bar equals 10 μm.

FIGURE 4 in Neotypification of Cistanche tubulosa (Schenk) Wight ex Hook.f.: a name applied to a widely distributed, polyphyletic group of plants

FIGURE 4. The neotype of Cistanche tubulosa collected from near the type locality in Sinai. A. the specimen (left) with its Amaranthaceae host (right). B. Magnification of a corolla of the neotype, with a living specimen (collected in southern Israel) for comparison; white arrow shows purple-pigmented corolla lobes; black arrow shows smaller lower central lobe. Note the dried corolla is more expanded around the waist due to compression. C. Magnification of bract, with a living specimen (collected in southern Israel) for comparison; white arrow shows the serrated margin (present in both dried and living material). Note the darkened (dried) tip in living material commensurate with the preserved specimen.

FIGURE 2 in Neotypification of Cistanche tubulosa (Schenk) Wight ex Hook.f.: a name applied to a widely distributed, polyphyletic group of plants

FIGURE 2. Cistanche tubulosa: A. Inflorescence, B. Corolla, showing calyx and serrated bract and small central lower lobe vs. lateral lobe in profile, C. View of compressed calyx showing sub-equal lobes. Specimens were illustrated based on the neotype and with reference to living material from the Middle East. Illustrations by CJ Thorogood.

FIGURE 1. A in Neotypification of Cistanche tubulosa (Schenk) Wight ex Hook.f.: a name applied to a widely distributed, polyphyletic group of plants

FIGURE 1. A typical specimen of Cistanche tubulosa growing in Eilat, c. 230 km from Wadi Feiran Oasis where the neotype was collected. B–E: morphological features of C. tubulosa including the calyx (B), filaments (C), corolla tube (D) and bract (E). F. Cistanche violacea, a putative species that co-occurs with C. tubulosa in the Middle East; G. An intermediate morphotype of the former two species where they co-occur in a wadi in southern Israel. Photos by CJ Thorogood.

FIGURE 3 in Neotypification of Cistanche tubulosa (Schenk) Wight ex Hook.f.: a name applied to a widely distributed, polyphyletic group of plants

FIGURE 3. The name Cistanche tubulosa is applied to entities in different clades, but with overlapping distributions: A. Relationships within the 'Widespread Clade' (Ataei et al., 2020) summarised to show the placement of species identified by the authors as C. tubulosa (plants from China in the 'C. laxiflora clade'; plants from the Middle East in the 'C. tubulosa clade') or as aff. C. tubulosa (plants from Oman and Yemen in the 'C. senegalensis clade'). Figure 3B. Distribution map of the specimens sequenced by Ataei et al. (2020) included in the phylogeny. The map shows specimens in the C. tubulosa clade in red, and specimens placed in the C. senegalensis clade in blue (note the overlap), including the four specimens referred to as C. aff. tubulosa (three in Oman and one in Yemen). The type localities of C. tinctoria and C. tubulosa are shown as a black circle and black square respectively.