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36 results for “primate diversity”
Data from: Macronutrient signature of dietary generalism in an ecologically diverse primate in the wild
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Data from: A major shift in diversification rate helps explain macroevolutionary patterns in primate species diversity
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Data from: Diversity and evolution of the primate skin microbiome
Skin microbes play a role in human body odour, health and disease. Compared to gut microbes we know comparatively little about the changes in the composition of skin microbes in response to evolutionary changes in hosts, or more recent behavioral and cultural changes in humans. No studies have used sequence-based approaches to consider the skin microbe communities of gorillas and chimpanzees, for example. Comparison of the microbial associates of non-human primates with those of humans offers unique insights into both the ancient and modern features of our skin associated microbes. Here we describe the microbes found on the skin of humans, chimpanzees, gorillas, rhesus macaques and baboons. We focus on the bacterial and Archaeal residents in the axilla using high throughput sequencing of the 16S rRNA gene. We find that human skin microbial communities are unique relative to those of other primates, both in terms of their diversity and composition. These differences appear to reflect both ancient shifts during millions of years of primate evolution and more recent changes due to modern hygiene.
Figure 9 from: Cezar AM, Pessoa LM, Bonvicino CR (2017) Morphological and genetic diversity in Callithrix hybrids in an anthropogenic area in southeastern Brazil (Primates: Cebidae: Callitrichinae). Zoologia 34: 1-9. https://doi.org/10.3897/zoologia.34.e14881
Figure 9 - The Bayesian and Maximum Likelihood analyses for MT-CYB of Callithrix, rooted by Saguinus. Numbers close to branches are boostrap values and posterior probability, respectively.
Figures 1-4 from: Cezar AM, Pessoa LM, Bonvicino CR (2017) Morphological and genetic diversity in Callithrix hybrids in an anthropogenic area in southeastern Brazil (Primates: Cebidae: Callitrichinae). Zoologia 34: 1-9. https://doi.org/10.3897/zoologia.34.e14881
Figures 1-4 Qualitative character differentiating Callithrix jacchus (1–2) from C. penicillata (3–4): presence/absence of a space in the upper jaw after the second molar, indicated by arrows.
Figures 7-8 from: Cezar AM, Pessoa LM, Bonvicino CR (2017) Morphological and genetic diversity in Callithrix hybrids in an anthropogenic area in southeastern Brazil (Primates: Cebidae: Callitrichinae). Zoologia 34: 1-9. https://doi.org/10.3897/zoologia.34.e14881
Figures 7-8 DFA analysis results. (7) Scatter plot of scores for discriminant function 1 x 2. Three distinguishable groups characterize the species and hybrids analyzed: (+) Callithrix penicillata, (Δ) C. jacchus, and (○) hybrids. (8) Contribution of morphometric variables to the discriminant functions. Vectors indicate the loadings of the scores for each variable on the first two discriminant functions.
Figures 5-6 from: Cezar AM, Pessoa LM, Bonvicino CR (2017) Morphological and genetic diversity in Callithrix hybrids in an anthropogenic area in southeastern Brazil (Primates: Cebidae: Callitrichinae). Zoologia 34: 1-9. https://doi.org/10.3897/zoologia.34.e14881
Figures 5-6 PCA analysis results. (5) Scatter plot of scores for principal component 1 x 2. Black circles represent Callithrix penicillata, white circles represent C. jacchus and grey circles represent hybrids. (6) Contribution of morphometric variables to the principal components. Vectors indicate the loadings of the scores for each variable on the first two principal components.
Figure 10 from: Cezar AM, Pessoa LM, Bonvicino CR (2017) Morphological and genetic diversity in Callithrix hybrids in an anthropogenic area in southeastern Brazil (Primates: Cebidae: Callitrichinae). Zoologia 34: 1-9. https://doi.org/10.3897/zoologia.34.e14881
Figure 10 - Haplotype network of MT-CYB sequences for Callithrix penicillata and Callithrix hybrids. Circles represent distinct haplotypes. White circles represent C. penicillata, black circles represent hybrids from the MR, and gray circles represent hybrids from the CL. The size of each circle is proportional to the number of individuals per haplotype, with the smallest circle corresponding to n = 1. The lozenge represents the medium-vector. Numbers near lines between haplotypes represent the number of mutations.
Data from: Diversity and evolution of the primate skin microbiome
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Transcriptomic diversity of amygdalar subdivisions across humans and nonhuman primates
GEO Series GSE281366. Macaca mulatta; Papio anubis; Homo sapiens. 47 samples. Type: Expression profiling by high throughput sequencing.
Diverse Non-Genetic Allele Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain [Primate Daughters]
GEO Series GSE93786. Macaca fascicularis. 10 samples. Type: Expression profiling by high throughput sequencing.
Diverse Non-Genetic Allele Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain [Primate Parents]
GEO Series GSE93785. Macaca fascicularis. 15 samples. Type: Methylation profiling by high throughput sequencing.
Transcriptional and anatomical diversity of medium spiny neurons in the primate striatum.
GEO Series GSE167920. Macaca mulatta. 9 samples. Type: Expression profiling by high throughput sequencing.
Genetic diversity of a single Helicobacter pylori strain over a ten year period in a primate model: effect of long term colonization and of a dietary carcinogen
GEO Series GSE60474. Helicobacter pylori. 56 samples. Type: Genome variation profiling by array.
Figure 3. Phylogenetic tree estimated using BEAST from dataset 1 in Phylogeography and evolutionary lineage diversity in the small-eared greater galago, Otolemur garnettii (Primates: Galagidae)
Figure 3. Phylogenetic tree estimated using BEAST from dataset 1 (cytochrome b) and node-calibrated using the fossil record.
Diversity and regulatory impact of copy number variation in the primate Macaca fascicularis
GEO Series GSE76708. Macaca fascicularis. 126 samples. Type: Genome variation profiling by SNP array; Genome variation profiling by genome tiling array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.