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195
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Dataset results
195 results for “publication models”
Datasets supporting the publication "Technical Note: in-situ measurements and modelling of the oxidation kinetics in films of a cooking aerosol proxy using a Quartz Crystal Microbalance with Dissipation monitoring (QCM-D)" by Milsom et al.
<p>Supporting experimental and modelling data for the manuscript entitled "Technical Note: Modelling and in-situ measurements of the oxidation kinetics in films of a cooking aerosol proxy using a Quartz Crystal Microbalance with Dissipation monitoring (QCM-D)" by Adam Milsom et al. 2023. </p> <p>Includes raw QCM-D data with the numbers at the beginning of the files corresponding to the experiment numbers in the manuscript. </p> <p>Normalised Raman peak area data for modelling and model ensemble outputs, including uptake coefficients. </p>
Data set associated to the publication "An active source seismo-acoustic experiment using tethered balloons to validate instrument concepts and modelling tools for atmospheric seismology"
<p>Data set of the scientific publication entitled "An active source seismo-acoustic experiment using tethered balloons to validate instrument concepts and modelling tools for atmospheric seismology":</p> <p>Seismological sensors</p> <p>Microphones</p> <p>Barometers</p> <p>Accelerometers</p> <p>Detailed test report.</p>
Data and modeling results for publication: Landscape genetics indicate recently increased habitat fragmentation in African forest-associated chafers
<ul> <li>DNA sequences: <em>cox1</em> and ITS1 alignments</li> <li>spatial records (in hypervolume archive)</li> <li>spatial principal component 1-3 used for <em>hypervolume</em> models (in hypervolume archive)</li> <li>Present and past species distribution models (SDMs): <ul> <li><em>biomod2</em> ensemble SDMs <ul> <li>Present</li> <li>Holocene Altithermal</li> <li>Last Glacial Maximum</li> </ul> </li> <li><em>biomod2</em> SDMs for single PMIP3 models <ul> <li>Present</li> <li>Holocene Altithermal</li> <li>Last Glacial Maximum</li> </ul> </li> <li><em>hypervolume</em> SDMs</li> </ul> </li> <li>landscape connectivity models <ul> <li>circuitscape (for F0, F1, and F2)</li> <li>least cost corridors and paths (for F0, F1, and F2)</li> </ul> </li> </ul>
Supplementary material for the publication: "Efficient Surrogate Models for Materials Science Simulations: Machine Learning-based Prediction of Microstructure Properties"
<p><span><span><span>This dataset contains supplementary code, images and models for the publication „Efficient Surrogate Models for Materials Science Simulations: Machine Learning-based Prediction of Microstructure Properties“.</span></span></span></p> <p> </p> <p><span><span><span>The content will be updated and additionally linked to the corresponding git repositories.</span></span></span></p>
Code and data for publication "Assessing carbon cycle projections from complex and simple models under SSP scenarios" published in "Climatic Change"
<p>Data and scripts for the article "Assessing carbon cycle projections from complex and simple models under SSP scenarios" by I. Melnikova, P. Ciais, O. Boucher and K. Tanaka was accepted for publication in Climatic Change (https://doi.org/10.1007/s10584-023-03639-5)</p><p> </p><p>We use bash, CDO, and python.</p><p>SSP2.xlsx contains preprocessed annual estimates of climate and carbon cycle variables from ESMs and SCMs used in the paper.</p><p>Two bash scripts contain preprocessing cdo commands for ESM output.s SCMs were preprocessed directly in python.</p><p>Jupyter notebook (python) contains preprocessing of data and plotting of all figures of the manuscript. The folder "additional" contains some more Excel files needed to run Jupyter-Notebook. Please adapt the folder names.</p><p>If you have any questions, please contact the corresponding author Irina MELNIKOVA at melnikova . irina@nies.go.jp</p><p> </p>
Data for the publication "Developing a climatological simplification of aerosols to enter the cloud microphysics of a global climate model" - part 1
<p>The data is split into two datasets, for each to be smaller than 50 GB.</p>
Dataset used in the publication "Using of Transformers Models for Text Classification to Mobile Educational Applications"
<p>Dataset used in the publication "Using of Transformers Models for Text Classification to Mobile Educational Applications".</p> <p>More info about the dataset can be found in the published article.</p>
Dataset for DFT and one-step model results used in publication "Persistence of Structural Distortion and Bulk Band Rashba Splitting in SnTe above Its Ferroelectric Critical Temperature" in Nano Letters, 2024, 24, 1, 82–88
<p>Dataset for DFT and one-step model results used in publication DOI 10.1021/acs.nanolett.3c03280, "Persistence of Structural Distortion and Bulk Band Rashba Splitting in SnTe above Its Ferroelectric Critical Temperature" in Nano Letters, 2024, 24, 1, 82–88.</p> <p>Description of dataset is in the ReadMe.txt file in subdirectories.</p>
Data generated for the publication: Keeping it in the family: Using protein family templates to rescue poor AlphaFold models unliked
<p>Data and manuscript of:</p> <p>Keeping it in the family: Using protein family templates to rescue low confidence AlphaFold2 models</p> <p>Francesco Costa1, Matthias Blum1 and Alex Bateman1</p> <ol> <li>European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton. CB10 1SD. UK</li> </ol> <ul> <li>results contains the workflow results;</li> <li>AF2_seed contains results of the comparison with AF2 run with multiple seeds;</li> </ul>
Data and scripts for the publication "A case for open communication of bugs in climate models"
<p>Primary data and scripts for the publication "A case for open communication of bugs in climate models" (submitted to GMDD as EGUSPHERE-2024-3493)</p>
Dataset for the publication entitled: "Assessment of lithium ion battery ageing by combined impedance spectroscopy, functional microscopy and finite element modelling""
<p>Related to the publication: <a href="https://doi.org/10.1016/j.jpowsour.2021.230459">https://doi.org/10.1016/j.jpowsour.2021.230459</a></p> <p>Datasets for the following Figures:</p> <p>Figure 2.</p> <p>Figure 3.</p> <p>Figure 5.</p> <p>Figure 7.</p>
Supplementary Material for 'Benchmarking Explanatory Models for Inertia Forecasting using Public Data of the Nordic Area'
<p>This data set is supplementary material for the paper 'Benchmarking Explanatory Models for Inertia Forecasting using Public Data of the Nordic Area' by Jemima Sophie Graham, Evelyn Heylen, and Fei Teng.</p> <p>This data set is intended for day-ahead inertia forecasting in the Nordic (Eastern Denmark, Finland, Norway, Sweden). It contains hourly data for the inertial energy (MVAs), day-ahead national demand forecast (MW), day-ahead wind power forecast (MW), day-ahead solar power forecast (MW), and interconnection flow (MW) in the Nordic between January 2016 and August 2020. </p>
Data for the publication "Assessing the potential for simplification in global climate model cloud microphysics"
<p>This repository contains the data for the paper:</p> <p>Authors: Ulrike Proske, Sylvaine Ferrachat, David Neubauer, Martin Staab, and Ulrike Lohmann<br> Titel: Assessing the potential for simplification in global climate model cloud microphysics<br> Date: 2022</p> <p>Note that the scripts can be found in the accompanying package (https://doi.org/10.5281/zenodo.5506588)</p>
Supplementary Data: OpenCOVID model output underlaying Figures 1 and 2 of "Modelling the impact of Omicron and emerging variants on SARS-CoV-2 transmission and public health burden"
<p>Supplementary data files <strong>Figure_1.xlsx</strong> and <strong>Figure_2.xlsx</strong> contain the model simulation outcomes for Figures 1 and 2 of <a href="https://www.medrxiv.org/content/10.1101/2021.12.12.21267673v2">Le Rutte, Shattock <em>et al</em></a> "<strong>Modelling the impact of Omicron and emerging variants on SARS-CoV-2 transmission and public health burden</strong>" (2022)</p> <ul> <li><strong>Figure 1</strong>: Peak daily hospital occupancy (number of beds per 100,000 population over the six-month simulation period) for three variant properties; infectivity (relative to Delta), immune evading capacity (%), and severity (relative to Delta)<br> </li> <li><strong>Figure 2</strong>: Percentage of COVID-19 infections and deaths averted by third-dose vaccines for adults and vaccinating 5-11-year-olds with doses one and two.<br> </li> <li>Open access source-codes of the associated plotting functions are published <a href="http://zenodo.org/record/6532404#.Yqw7cezMKdb">here</a> on Zenodo.<br> </li> <li>Open access source-codes for the OpenCOVID model of all analyses as presented in <a href="https://www.medrxiv.org/content/10.1101/2021.12.12.21267673v2">Le Rutte, Shattock <em>et al.</em> (2022)</a> are publicly available at <a href="https://github.com/SwissTPH/OpenCOVID/tree/manuscript_december_2021/src">https://github.com/SwissTPH/OpenCOVID/tree/manuscript_december_2021/src</a>.<br> </li> <li>Detailed model descriptions and model equations of individual-based transmission model <strong>OpenCOVID</strong> are described in <a href="https://pubmed.ncbi.nlm.nih.gov/34923396/">Shattock <em>et al</em>. (2022)</a> and <a href="https://www.medrxiv.org/content/10.1101/2021.12.12.21267673v2">Le Rutte, Shattock <em>et al.</em> (2022).</a></li> </ul>
Data to accompany the publication "Combined biophysical and genetic modelling approaches reveal complementary information about population connectivity of New Zealand green-lipped mussels"
<p>Data to accompany the publication "Combined biophysical and genetic modelling approaches reveal complementary information about population connectivity of New Zealand green-lipped mussels". </p> <p>migrationmatrix14.txt contains the particle tracking matrix, with the total number of particles that migrated from row i to column j (out of a total of 2217864 particles released per population).</p> <p>mussel_microsat_Genepop.txt contains the microsatellite data for each population in Genepop format.</p>
Data and code related to publication "Migration pulsedness alters patterns of allele fixation and local adaptation in a mainland-island model" - Aubree et al. 2021
<p>Those data sets and codes are related to the manuscript "Migration pulsedness alters patterns of allele fixation and local adaptation in a mainland-island model" available on BioRXiv.</p> <p>All the information that are necessary to use those data sets and codes are contained in the file "readme.txt".</p>
Deep potential model and datasets used in the publication "Plastic Deformation of Superionic Water Ices"
<p>The file training_data_for_deepmd.zip contains the training set and deep potential model for superionic ices used in the publication "Plastic Deformation of Superionic Water Ices". The deep potential (DP) neural-network model was generated using the DeepMD-kit package. The training set was generated using AIMD/CP2K calculations for both undeformed and deformed states of the fcc superionic phase at temperatures of 2500, 3000, 3500 and 4000 K. </p> <p> </p> <p>The file cp2k_shear.zip contains instructions to modify the CP2K code to calculate the shear vs strain deformation in continuous mode. </p> <p> </p> <p>The file lammps_dislocation.zip contains the files needed to run the dislocation mobility calculation. </p> <p> </p>
iHelp public synthetic dataset - model training
<p>This is the model training version of the iHelp public synthetic dataset that has been synthesized from primary and secondary data collected during the Medical University Plovdiv pilot implementing their cancer program. The difference from the parent dataset is that the mean pain in the third interval has been selected as the outcome to be predicted, and the dataset is split into input and output vectors for training, validation and testing. The dataset is described in the "iHelp public synthetic dataset - model training.docx" file.</p>
PREPCLIM software - additional material for publication in "Geoscientific Model Development" 2024
<p>Data set illustrating the software developed in the PREPCLIM project and used in the proposed paper:</p> <p>A Modeling System for Identification of Maize Ideotypes, optimal sowing dates and nitrogen<br>fertilization under climate change – PREPCLIM-v1</p> <p>https://doi.org/10.5194/gmd-2024-105<br>Preprint. Discussion started: 11 July 2024<br>c Author(s) 2024. CC BY 4.0 License.</p>
Supplementary material for publication "Multi-Echelon Inventory Optimization in Supply Chain Networks: Exploring Network Structures and Predictive Modeling"
<div> <div> <div> <p>This dataset collects different supply chain network structures generated artificially. We present four types of networks: Serial, Convergent, Divergent, and General, each type consisting of 20,000 individual instances. All 80,000 network instances generated are available to researchers and practitioners in Excel. The repository consists of separate files for each network instance consisting of each network inventory data, node connections, and a visual representation.</p> </div> </div> </div>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.