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Extra terrestrials: experimental drought creates niche space for rare invertebrates in terrestrialising stream channels
<p>The code and data for the paper entitled "Extra terrestrials: experimental drought creates niche space for rare invertebrates in terrestrialising stream channels" published in <em>Biology Letters</em>.</p>
Biomass %N, %C, natural abundance 15N and 13C isotopic signatures for common and rare under- and overstory plants in long unburned and burned (1999) boreal forest stands, Caribou-Poker Creek and Delta Junction
This dataset contains leaf, aboveground stem, and fruit carbon and N concentration and natural abundance isotope data for new and old tissue fractions of common and rare plant species in burned and unburned black spruce forest stands. Stands were located in either Caribou-Poker Creek or Delta Junction, in either unburned areas, or in areas burned in 1999 fires. Biomass was collected between 2000 and 2001 in mid-July at peak biomass.
Fig. 1 in Phylogenetic notes on the rare Mediterranean digger wasp Psenulus fulvicornis (Schenck, 1857) (Hymenoptera: Crabronidae) new to Switzerland
Fig. 1. Sampling sites of Psenulus fulvicornis (Schenck, 1857) (large filled circles) and Psenulus schencki (Tournier, 1889) (squares) used for the DNA barcode sequencing of the mitochondrial cox1 locus. Small filled circles show georeferenced distribution records of P. fulvicornis with confirmed determinations by Schmid-Egger (2002) together with newer records by Gayubo et al. (2012), Mokrousov & Popov (2016), Reder & Niehuis (2014), Standfuss & Standfuss (2012) and Zsolt (2008). The triangle represents the undetermined specimen (PSC-7) from Pisa, Italy.
Fig. 5 in Phylogenetic notes on the rare Mediterranean digger wasp Psenulus fulvicornis (Schenck, 1857) (Hymenoptera: Crabronidae) new to Switzerland
Fig. 5. Maximum likelihood tree showing the phylogenetic relationships within Psenulus taxa based on cox1 and the GTR+G substitution model. All bifurcations with bootstrap values below 60% were collapsed. The bold black lines indicate bootstrap of at least 70% and the thick grey bifurcations 60-70%. Both Diodontus minutus (Fabricius, 1793) and Pemphredon lethifer (Shuckard, 1837) sequences root this tree. Specimens are labelled with the sample ID, their GenBank accession number or the Barcode Identification Number of the BOLD System, and the collection site if known (see supplementary Table S1). Six lineages I–VI were found within the P. fulvicornis-Group.
Fig. 2 in Revised Diagnosis of the Rare Clingfish Kopua nuimata (Gobiesocidae) with Notes on Fresh Coloration and First Australian Record
Fig. 2. Kopua nuimata (CSIRO H6007-17, 29.0 mm SL), Norfolk Ridge, south of Norfolk Island, Australia. Photographed subsequent to thawing. Photographs provided by CSIRO.
FIG. 4 in First record of the rare Wide-mouth flounder Kamoharaia megastoma (Kamohara, 1936) (Pleuronectiformes, Bothidae) from the western Indian Ocean collected during the ATIMO VATAE expedition to Madagascar "Deep South"
FIG. 4. — Kamoharaia megastoma (Kamohara, 1936), SAIAB 189603, 108.7 mm SL, Madagascar: A, lateral line scale ocular side; B, body scale ocular side; C, body scale blind side. Scale bars: 200 µm.
FIG. 3 in First record of the rare Wide-mouth flounder Kamoharaia megastoma (Kamohara, 1936) (Pleuronectiformes, Bothidae) from the western Indian Ocean collected during the ATIMO VATAE expedition to Madagascar "Deep South"
FIG. 3. — Kamoharaia megastoma (Kamohara,1936), SAIAB 189603, 108.7 mm SL, Madagascar: A, close-up of ocular side of head; B, close-up of blind side of head; C, close-up of ocular side of mouth. Scale bars: A, B, 20 mm; C, not to scale.
FIG. 2 in First record of the rare Wide-mouth flounder Kamoharaia megastoma (Kamohara, 1936) (Pleuronectiformes, Bothidae) from the western Indian Ocean collected during the ATIMO VATAE expedition to Madagascar "Deep South"
FIG. 2. — Kamoharaia megastoma (Kamohara, 1936), SAIAB 189603, 108.7 mm SL, Sud-Ouest Pointe Barrow, Madagascar: A, ocular side fresh specimen (photograph by S. Ribes); B, ocular side preserved specimen; C, blind side preserved specimen. Scale bar: 20 mm.
Figure 2 in The rare rhinoceros beetle, Ceratophileurus lemoulti Ohaus, 1911, in French Guiana and Suriname (Coleoptera, Scarabaeidae, Dynastinae, Phileurini)
Figure 2. Male specimen of Ceratophileurus lemoulti Ohaus collected at Raleighvallen, Suriname. Photograph by Alain and Marcel Galant.
Fig. 3 in Rare sponges from marine caves: discovery of Neophrissospongia nana nov. sp. (Demospongiae, Corallistidae) from Sardinia with an annotated checklist of Mediterranean lithistids
Fig. 3. Neophrissospongia nana nov. sp., holotype MSNG 54599, spicular complement. A. Dichotriaene. B. Cladome of a tubercled dichotriaene (top view). C. Streptaster/amphiaster microscleres with tubercles. D. Cladome of a smooth dichotriaene (top view). E. Dicranoclone desma. F. Styles/sub-tylostyles.
Figure 1 in The rare rhinoceros beetle, Ceratophileurus lemoulti Ohaus, 1911, in French Guiana and Suriname (Coleoptera, Scarabaeidae, Dynastinae, Phileurini)
Figure 1. Male specimen of Ceratophileurus lemoulti Ohaus collected in French Guiana (YPC). Photograph by Yannig Ponchel. Aedeagus (aed) attached to card mount underneath specimen, in oblique view.
Figure 3 in The rare rhinoceros beetle, Ceratophileurus lemoulti Ohaus, 1911, in French Guiana and Suriname (Coleoptera, Scarabaeidae, Dynastinae, Phileurini)
Figure 3. Distribution map for Ceratophileurus lemoulti Ohaus. Collection localities in black circles.
Fig. 8 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 8. Umborotula bogorensis (Weber, 1890). Possible type locality in a pond of the Bogor Botanical Garden (Java). Picture after Arndt (1932).
Fig. 9. A in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 9. A. Part of the type encrusting on a plant, 1901:10:22:1 of Ephydatia blembingia = Umborotula bogorensis, the Natural History Museum of London. B. Six slides ZMA POR 01551 representing the remains of the type material of Umborotula bogorensis preserved in the Institute for Systematics and Population Biology of the University of Amsterdam.
Fig. 4 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 4. Umborotula bogorensis (Weber, 1890) from the Sakaerat Biosphere Reserve, NE Thailand. SEM micrographs. a. Gemmules in a group within skeletal meshes. Gemmular theca with almost flat foraminal area. Several free gemmuloscleres also scattered in the skeletal network. b. Gemmule (basal area, top view) with developed outer layer covering the distal rotules of radial gemmuloscleres. c–d. Gemmules showing foraminal area (central); outer layer is lacking (top view). e. Gemmule without outer layer showing partially dissociated gemmuloscleres in the pneumatic layer and the smooth inner layer of compact spongin. Foramen simple, with short collar. f. Gemmule (cross section) with foraminal tubule and radial gemmuloscleres in the trilayered theca. g. Outer layer at the theca surface with distal rotules of gemmuloscleres. h. Distal rotules of gemmuloscleres without outer layer. i. Proximal rotules of gemmuloscleres adhering to the inner layer of the theca. j–k. Foraminal area supported by a network of spongin fibres and a rosette of radial gemmuloscleres. l. Architecture of trilayered gemmular theca with radial gemmuloscleres and spiny shafts (cross section). m–o. Fibrous network of thin spongin fibres in the pneumatic layer (detail, cross section).
Fig. 5 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 5. Umborotula bogorensis (Weber, 1890) from the Sakaerat Biosphere Reserve, NE Thailand. Spicular complement (SEM) of gemmules and skeleton. a. Gemmulosclere birotules armed by large spines. b. Rotule of a gemmulosclere (top view). c. Shafts of gemmuloscleres with large scattered spines. d. Rotules of gemmulosclere (lateral view). e. Megascleres (oxeas) of the skeleton. f. Megascleres, tips. g. Megascleres, shafts.
Fig. 7 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 7. Historical trend of faunistic and taxonomic investigations focusing on Umborotula bogorensis (Weber, 1890). The papers mentioning this species are 40. The 15 papers (box) reporting new records are indicated by asterisks. See also Fig. 1 (map) and Appendix.
Fig. 6 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 6. Umborotula bogorensis (Weber, 1890) (as Ephydatia bogorensis Weber, 1890 and E. blembingia Evans, 1901). a–c. Diagnostic morphotraits from plates in original descriptions. d–f. Gemmule and spicules (LM) of E. blembingia from the type, BMNH 1901:10:22:1−2. a–b. Modified from Evans (1901). c. Modified from Weber (1890).
Fig. 1 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 1. Biogeographic pattern of the monotypic genus Umborotula with published records. The new record from the Sakaerat Biosphere Reserve in NE Thailand (14°30ʹ15.83″ N, 101°55ʹ03.64″ E) is indicated by the green square. For question marks, see text in the historical accounts section. The unpublished records are not reported (see Appendix). Red dots indicate the type localities of Ephydatia bogorensis Weber, 1890 and E. blembingia Evans, 1901.
Fig. 3 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 3. Umborotula bogorensis (Weber, 1890) from the Sakaerat Biosphere Reserve, NE Thailand. a. sampling site along a temporary streamlet and pool; arrows indicate the microhabitat of the two recorded specimens. b. Gemmule carpets (arrows) during low water level (dry season). c. Encrusting sponge with gemmules on a stick from the pool.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.