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datasets available to search
ShareScore release 0.9.0
Dataset results
34 results for “refseq”
Mash Sketch of RefSeq Bacterial Representative Genomes v215
<p>Prepared as described in https://github.com/UPHL-BioNGS/DesolationCanyon.</p> <p> </p> <p>This is the representative genomes of refseq 215 with their taxon name.</p>
Viral RefSeq mmseqs2 taxonomy database
<p>Virus taxonomy database build for mmseqs2 taxonomy module</p>
Refseq mitochondrial sequences
<p>Nucleotide sequences of Refseq Releases Number 89 and 204</p>
Viral RefSeq databases for Centrifuge, Kraken2 and DIAMOND
Open the record for dataset details and reuse information.
Centrifuge Index for NCBI RefSeq Viruses 2020-01-30
<p>Centrifuge index for NCBI RefSeq Viruses downloaded 2020-01-30</p>
NCBI RefSeq Escherichia coli sequence assemblies
<p>18 GB Escherichia coli sequences downloaded from the NCBI assembly database.</p>
RefSeq - WhatsGNU hashed basic database
<p>WhatsGNU hashed basic database for all species in RefSeq</p>
Linked collectors and determiners for: Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project..
Natural history specimen data linked to collectors and determiners held within, "Fungal 28S Ribosomal RNA (LSU) RefSeq Targeted Loci Project.". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/bf3f09bd-3af6-45be-a2c4-bd5c285cab8a">https://bionomia.net/dataset/bf3f09bd-3af6-45be-a2c4-bd5c285cab8a</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/bf3f09bd-3af6-45be-a2c4-bd5c285cab8a">https://gbif.org/dataset/bf3f09bd-3af6-45be-a2c4-bd5c285cab8a</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Fungal Internal Transcribed Spacer RNA (ITS) RefSeq Targeted Loci Project.
Natural history specimen data linked to collectors and determiners held within, "Fungal Internal Transcribed Spacer RNA (ITS) RefSeq Targeted Loci Project". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/9baace02-10fe-4972-b3ec-2cb647c55194">https://bionomia.net/dataset/9baace02-10fe-4972-b3ec-2cb647c55194</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/9baace02-10fe-4972-b3ec-2cb647c55194">https://gbif.org/dataset/9baace02-10fe-4972-b3ec-2cb647c55194</a>. Formatted as a Frictionless Data package.
Raptor@GenomeBiology: RefSeq data set
<p>Size: 29 GiB</p> <p>SHA256: cbf98d727cb87df8dff249714c4a2e07e24ade532e7d56f8849e3e9d8c0f27db</p>
Minimap2 index RefSeq virus sequences 2023/05/04 (release 218)
<p>Minimap2 index<br> RefSeq Virus Sequences 2023/05/04, RefSeq release 218<br> 16,398 sequences; 515,122,543 bp</p>
Sall4 ChIP-chip in mouse ES cell line W4 using NimbleGen MM8 RefSeq Promoter array (2.5kb)
GEO Series GSE11305. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by genome tiling array.
SALL4 ChIP-chip using NimbleGen HG18 RefSeq Promoter tiling array (2.7kb)
GEO Series GSE10734. Homo sapiens. 5 samples. Type: Expression profiling by genome tiling array.
RNA-seq gene expression profiling of RefSeq genes in nuclear RNA from livers of mice treated with the nuclear receptor CAR (Nr1i3) agonist ligand TCPOBOP for 2 week or for 8 week.
GEO Series GSE248858. Mus musculus. 28 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.