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datasets available to search
ShareScore release 0.9.0
Dataset results
50 results for “root nodules”
Regulation of gene expression during formation of nodule-like structures (NLS) in rice roots
GEO Series GSE92835. Oryza sativa. 18 samples. Type: Expression profiling by high throughput sequencing.
Stepwise evolution of root nodule symbiosis
GEO Series GSE264606. Elaeagnus umbellata; Coriaria nepalensis; Alnus trabeculosa; Populus deltoides x Populus x canadensis; Chamaecrista pumila; Medicago truncatula; Mimosa pudica. 37 samples. Type: Other; Expression profiling by high throughput sequencing.
Chickpea shows genotype-specific nodulation responses across soil nitrogen environment and root disease resistance categories
GEO Series GSE162321. Cicer arietinum. 36 samples. Type: Expression profiling by high throughput sequencing.
Stepwise evolution of root nodule symbiosis [RNA-seq]
GEO Series GSE264605. Elaeagnus umbellata; Coriaria nepalensis; Alnus trabeculosa; Populus deltoides x Populus x canadensis; Mimosa pudica; Chamaecrista pumila. 35 samples. Type: Expression profiling by high throughput sequencing.
Gene expression profile at single cell level from Glycine max nodules and roots.
GEO Series GSE226149. Glycine max. 5 samples. Type: Expression profiling by high throughput sequencing.
Metabolomics and Dual RNA-Sequencing on Root Nodules Revealed New Cellular Functions Controlled by Paraburkholderia phymatum NifA
GEO Series GSE176287. Paraburkholderia phymatum STM815; Phaseolus vulgaris. 4 samples. Type: Expression profiling by high throughput sequencing.
NODULE INCEPTION recruits the lateral root developmental program for symbiotic nodule organogenesis
GEO Series GSE133612. Medicago truncatula. 240 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide maps of chromatin state in Medicago truncatula nodule and non nitrogen-starved root systems
GEO Series GSE111220. Medicago truncatula. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Regulation of resource partitioning coordinates lateral root and nodule development in the legume Medicago truncatula
GEO Series GSE116789. Medicago truncatula. 41 samples. Type: Expression profiling by array.
Micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
GEO Series GSE35885. Lotus japonicus. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Cell- and tissue-specific transcriptome analyses of Medicago truncatula root nodules
GEO Series GSE43354. Sinorhizobium meliloti; Medicago sativa; Medicago truncatula. 15 samples. Type: Expression profiling by array.
Genome-wide transcript analysis of Bradyrhizobium japonicum bacteroids in soybean root nodules
GEO Series GSE8478. Bradyrhizobium japonicum; Glycine max; Bradyrhizobium diazoefficiens USDA 110. 71 samples. Type: Expression profiling by array.
Sinorhizobium meliloti root nodule bacterial transcriptomes for wild type and four mutant strains.
GEO Series GSE116664. Medicago truncatula; Sinorhizobium meliloti. 20 samples. Type: Expression profiling by array.
Stepwise evolution of root nodule symbiosis [DAP-seq]
GEO Series GSE264604. Medicago truncatula. 2 samples. Type: Other.
Rhizobial adaptation to hosts, a new facet in the legume root-nodule symbiosis
GEO Series GSE18884. Bradyrhizobium japonicum; Macroptilium atropurpureum; Vigna unguiculata subsp. unguiculata; Glycine max; Bradyrhizobium diazoefficiens USDA 110. 15 samples. Type: Expression profiling by array.
High-throughput pyrosequencing of miRNAs from Medicago truncatula nodules and roots
GEO Series GSE15438. Medicago truncatula. 3 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Gene expression data from phosphinothricin (PPT) treated Medicago truncatula root nodules
GEO Series GSE34155. Sinorhizobium meliloti; Medicago sativa; Medicago truncatula. 12 samples. Type: Expression profiling by array.
The salt-responsive transcriptome of chickpea roots and nodules via deepSuperSAGE
GEO Series GSE26638. Cicer arietinum. 4 samples. Type: Expression profiling by high throughput sequencing.
Fig. 3 in Metabolite pattern in root nodules of the actinorhizal plant Casuarina equisetifolia
Fig. 3. The contents of tyramine in various organs of C. equisetifolia. Values are in mean ± SD, where n = 3.
Fig. 4. A in 3-Pentanol glycosides from root nodules of the actinorhizal plant Alnus cremastogyne
Fig. 4. A. cremastogyne plants treated with root nodule suspension (RNS) emit 3-pentanol. (A) 3-Pentanol was detected in the VOCs of A. cremastogyne treated with RNS. The unity of Y-axis would be nmol per plant per h, and nmol per g nodules per h for groups of control A. cremastogyne and control RNS, respectively. n =5 (A. cremastogyne treated with RNS), 4 (control RNS), and 3 (control A. cremastogyne) biological replicates. The data shown are mean ± SD. Significant differences of A. cremastogyne treated with RNS from control RNS and from control A. cremastogyne are shown in * and #, respectively (Student's t-test: * and # indicate P <0.05, while *** and ### indicate P <0.001). (B) 3-Pentanol was detected in the body of A. cremastogyne treated with RNS (n = 5 biological replicates). (C) The accumulated amounts of 3-pentanol in the leaves and roots of A. cremastogyne treated with RNS. The data shown are mean ± SD from three biological replicates.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.