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ShareScore release 0.9.0
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220 results for “sequence age”
Data from: Demographic inference from whole-genome and RAD sequencing data suggests alternating human impacts on goose populations since the last ice age
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Data from: Estimating bloodstain age in the short term based on DNA fragment length using nanopore sequencer
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Supplementary Data for "A Holocene n-alkane stable isotope sequence from Wonderwerk Cave, 1 South Africa and its implications for the Later Stone Age record"
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Figure 5 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys 20: 1-16. https://doi.org/10.3897/mycokeys.20.11265
Figure 5 - Relative abundance distribution of fungal leaf-inhabiting endophytes of beech among the five main trophic guilds as revealed by analysis with FUNGuild (Nguyen et al. 2016). A compares the two localities for each trophic guild on the basis of Illumina data B compares the two localities for each trophic guild on the basis of cultivation data.
Figure 4 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys 20: 1-16. https://doi.org/10.3897/mycokeys.20.11265
Figure 4 - Relative abundance of fungal leaf-inhabiting endophytes of beech among the five main trophic guilds as revealed by analysis with FUNGuild (Nguyen et al. 2016). A compares the two methods for each trophic guild and unassigned data. B displays the trophic guilds and unassigned taxa for Illumina data, C for cultivation data. Abbreviations in [B and C]: U = Unassigned, P = Pathotrophs, PSa = Patho-Saprotrophs, PSy = Patho-Symbiotrophs, Sa = Saprotrophs, Sy = Symbiotrophs
Figure 2 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys 20: 1-16. https://doi.org/10.3897/mycokeys.20.11265
Figure 2 - . Principal coordinate analysis (PCoA) of fungal leaf-inhabiting endophytes of beech display strongly differing assemblages obtained with Illumina sequencing and cultivation. Both methods revealed differing mycobiomes from valley and from mountain leaves, although these differences were less pronounced for cultivation data. Abbreviations: IM = Illumina data from mountain samples, IV = Illumina data from valley samples, CM = cultivation data from mountain samples, CV = cultivation data from valley samples
Figure 3 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys 20: 1-16. https://doi.org/10.3897/mycokeys.20.11265
Figure 3 - Abundance distribution of the 20 most abundant orders of fungal leaf-inhabiting endophytes of beech on a logarithmic scale. Three of the five most abundant orders from high-throughput sequencing were also most abundant in cultivation data.
Figure 1 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys 20: 1-16. https://doi.org/10.3897/mycokeys.20.11265
Figure 1 - Diversity indexes and accumulation curves for a Illumina and b cultivation data of fungal leaf-inhabiting endophytes of beech. Except of the accumulation curves of cultivation data, both methods revealed a clear and partly significant trend of higher fungal diversity at the valley site.
Age-related neural changes underlying long-term recognition of musical sequences - Communications Biology - Leonardo Bonetti - Dataset
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Profiling epigenetic aging at cell-type resolution through long-read sequencing
GEO Series GSE296282. Homo sapiens. 5 samples. Type: Methylation profiling by high throughput sequencing.
Total RNA sequencing data for transcriptome analysis of testicular aging in mice
GEO Series GSE175633. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Epigenetic age-predictions in mice using pyrosequencing, droplet digital PCR or barcoded bisulfite amplicon sequencing
GEO Series GSE156193. Mus musculus. 111 samples. Type: Methylation profiling by high throughput sequencing.
RNA sequencing of WT and Srp72+/- LT-HSCs from aged mice
GEO Series GSE132900. Mus musculus. 7 samples. Type: Expression profiling by high throughput sequencing.
Aging-associated alterations in mammary epithelia and stroma revealed by single-cell RNA sequencing
GEO Series GSE150580. Mus musculus. 7 samples. Type: Expression profiling by high throughput sequencing.
Transcriptional Heterogeneity and Differential Response of Rod Photoreceptor Pathway Uncovered by Single‐Cell RNA Sequencing of the Aging Mouse Retina
GEO Series GSE230049. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA-sequencing on aged mouse lung mesenchymal cells.
GEO Series GSE157379. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
RNA Sequencing with de novo assembly of earthworm transcriptome by the treatment of lindane with different exposure and aging duration.
GEO Series GSE118678. Eisenia fetida. 15 samples. Type: Expression profiling by high throughput sequencing.
Unravelling the Transcriptomic Symphony of Muscle Ageing: Key Pathways and Hub Genes Altered by Ageing and Caloric Restriction in Rat Muscle Revealed by RNA Sequencing
GEO Series GSE255551. Rattus norvegicus. 18 samples. Type: Expression profiling by high throughput sequencing.
RNA sequencing after forced turnover of adult and aged microglia
GEO Series GSE123847. Mus musculus. 48 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA sequencing of lung myeloid cells from aged (20-22 months old) mice treated with Isotype or anti-IFNAR1 antibody for 1 day or 1 week
GEO Series GSE167170. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.