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46 results for “sequencing quality”
Supplementary material 2 from: Nilsson RH, Sánchez-García M, Ryberg M, Abarenkov K, Wurzbacher C, Kristiansson E (2017) Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory. MycoKeys 26: 13-24. https://doi.org/10.3897/mycokeys.26.14591
The 86 multiple sequence alignments used : Data type: Text
Figure 2 from: Nilsson RH, Sánchez-García M, Ryberg M, Abarenkov K, Wurzbacher C, Kristiansson E (2017) Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory. MycoKeys 26: 13-24. https://doi.org/10.3897/mycokeys.26.14591
Figure 2 - Public fungal ITS sequences are subjected to insufficient trimming in their distal ends. Panel a shows the dissimilarity (y-axis) as a function of the relative sequence position (x-axis). The plot is based on 10,584 sequences from 86 species. Panel b and c show zoom-ins of the 5' and 3' ends, respectively. Dashed lines indicate point-wise standard errors.
Figure 1 from: Nilsson RH, Sánchez-García M, Ryberg M, Abarenkov K, Wurzbacher C, Kristiansson E (2017) Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory. MycoKeys 26: 13-24. https://doi.org/10.3897/mycokeys.26.14591
Figure 1 - Example of poorly trimmed sequences (sequence four and on) from the species Setosphaeria turcica. The 5' end of the alignment is shown, and the poorly trimmed sequences cover the last ~5 bases of SSU and the immediate start of ITS1. The topmost sequence is genome-derived, and sequences two and three are regular Sanger sequences retrieved from the INSDC from other studies than the one with the poorly trimmed sequences (sequences four and on). SeaView v. 4 (Gouy et al. 2010) was used to visualize the alignment.
Figure 3 from: Nilsson RH, Sánchez-García M, Ryberg M, Abarenkov K, Wurzbacher C, Kristiansson E (2017) Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactory. MycoKeys 26: 13-24. https://doi.org/10.3897/mycokeys.26.14591
Figure 3 - The proportion of poorly trimmed (y-axis) fungal ITS sequences submitted to the INSDC does not decrease over time (x-axis). The regression line (dashed), which was derived by overdispersed Poisson rate regression, shows a weak but significant increasing trend (yearly relative increase of 0.047, p=0.0291).
Biostatistical aspects of whole genome sequencing studies: pre-processing and quality control
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Optimization of the Acquisition Sequence to Improve the Quality and Comfort of Magnetic Resonance Imaging Exam
ClinicalTrials.gov study NCT04645628. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Data from: Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences
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Data from: Diversity measures in environmental sequences are highly dependent on alignment quality—data from ITS and new LSU primers targeting basidiomycetes
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Data from: PCR-Free enrichment of mitochondrial DNA from human blood and cell lines for high quality next-generation DNA sequencing
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Large particle fluorescence-activated cell sorting enables high quality single cell RNA-sequencing and functional analysis of adult cardiomyocytes
GEO Series GSE133640. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Quality evaluation of Methyl Binding Domain based kits for enrichment DNA-methylation sequencing
GEO Series GSE42790. Homo sapiens. 18 samples. Type: Methylation profiling by high throughput sequencing.
Loss of function of chromatin remodeler OsCLSY4 led to RdDM-mediated mis-expression of endosperm-specific genes effecting grain qualities [Bisulfite_sequencing]
GEO Series GSE289152. Oryza sativa. 1 samples. Type: Methylation profiling by high throughput sequencing.
Lyophilized human cells stored at room temperature preserve multiple RNA species at excellent quality for RNA sequencing
GEO Series GSE106344. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Screening for Non-Invasive rsRNA Biomarkers to Assess Embryo Quality Using Ultra-Sensitive Pandora Sequencing Combined with Machine Learning
GEO Series GSE278434. Homo sapiens. 121 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Impact of Phonatory and Facial Morphology Disorders, on the Quality of Life of Adolescents With Pierre Robin Sequence
ClinicalTrials.gov study NCT03194178. IPD Sharing: NO. Countries: 1. Publications: 0.
Optimization of Sequences to Improve the Quality and Comfort of the Magnetic Resonance Imaging Examination
ClinicalTrials.gov study NCT05326581. IPD Sharing: NO. Countries: 1. Publications: 0.
Quality of Image and Performance Diagnoses of the 3D Sequence of Cholangio-pancreatography MRI in Apnea With Compressed Acquisition
ClinicalTrials.gov study NCT03533855. IPD Sharing: Not stated. Countries: 1. Publications: 0.
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium
GEO Series GSE47774. Homo sapiens; synthetic construct. 3396 samples. Type: Expression profiling by high throughput sequencing.
Loss of function of chromatin remodeler OsCLSY4 led to RdDM-mediated mis-expression of endosperm-specific genes effecting grain qualities [CLSY4_small_RNA_sequencing]
GEO Series GSE289382. Oryza sativa. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Data from: Expected genotype quality and diploidized marker data from genotyping-by-sequencing of Urochloa spp. tetraploids
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.