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80
datasets available to search
ShareScore release 0.9.0
Dataset results
80 results for “single-cell ATAC-seq”
Time course single-cell RNA-seq and single-cell ATAC-seq data from mESCs treated with retinoic acid
GEO Series GSE227320. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Analysis of chromatin accessibility in adult mouse pituitary using single-cell ATAC-seq
GEO Series GSE158070. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Coupled single-cell epigenome editing and profiling reveals causal gene regulatory networks [Bulk ATAC-seq]
GEO Series GSE116247. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A genetic map of the murine dorsal vagal complex and its role in obesity [single-cell RNA-seq and ATAC-seq]
GEO Series GSE166648. Mus musculus. 35 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
cisTopic: cis-regulatory topic modelling on single-cell ATAC-seq data
GEO Series GSE114557. Homo sapiens. 771 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell analysis of the epigenomic and transcriptional landscape of innate immunity to seasonal and adjuvanted pandemic influenza vaccination in humans [ATAC-seq]
GEO Series GSE166180. Homo sapiens. 51 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell analysis of the epigenome and 3D chromatin architecture in the human retina [mm10_ATAC-seq]
GEO Series GSE276923. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell ATAC-Seq (scATAC-Seq) of mouse basal cell carcinoma (BCC) immune cells.
GEO Series GSE204863. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines
GEO Series GSE114446. Homo sapiens. 33 samples. Type: Expression profiling by high throughput sequencing.
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Ikzf1 ATAC-Seq]
GEO Series GSE239802. Mus musculus. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps [ATAC-seq]
GEO Series GSE89362. Mus musculus. 265 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps [scRNA-Seq]
GEO Series GSE89280. Mus musculus. 568 samples. Type: Expression profiling by high throughput sequencing.
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing
GEO Series GSE194024. Mus musculus; Homo sapiens. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Nanowell-based single-cell combinatorial indexed ATAC-seq
GEO Series GSE218881. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer [ATAC-seq]
GEO Series GSE201336. Homo sapiens. 89 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell ATAC-seq analysis of hESCs undergoing neuronal differentiation [scATAC-seq]
GEO Series GSE192856. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A reference single-cell regulomic and transcriptomic map of cynomolgus monkeys [ATAC-seq]
GEO Series GSE196791. Macaca fascicularis. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell analysis of human MAIT cell transcriptional, functional and clonal diversity [ATAC-seq]
GEO Series GSE238139. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-cell ATAC-seq of circulating leukocytes reveals global epigenetic alterations as a prognostic factor in critical illness
GEO Series GSE175694. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing [DataSet1: scNanoATAC-seq]
GEO Series GSE194022. Mus musculus; Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.