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112 results for “species survival”
Quantifying species traits related to oviposition behavior and offspring survival in two important disease vectors
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Data from: Winners and losers from climate change: An analysis of tree growth and survival responses to temperature and precipitation for roughly 150 species across the contiguous U.S.
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Data from: Survival and growth of three boreal conifer species transplanted to warm sites: Implications for responses to global warming and extreme climatic events
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Large-scale supplemental feeding alters lay date and nest survival in Eastern Bluebirds but not in two species of chickadees
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Drought survival is positively associated with high turgor loss points in temperate perennial grassland species
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Data from: Recurrent sublethal warming reduces embryonic survival, inhibits juvenile growth, and alters species distribution projections under climate change
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Methods of species pool determination as predictors of survival in seeding and transplanting experiments
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An explicit test of Pleistocene survival in peripheral versus nunatak refugia in two high mountain plant species
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Data from: A meta-analysis of global avian survival across species and latitude
<p>Tropical birds are thought to be longer lived than many temperate species. We explored the idea of higher survival at tropical latitudes and whether extrinsic climate factors and intrinsic traits helped explain this pattern using a meta-analytical approach. The dataset consists of 949 estimates from 204 studies of avian survival from both New World and Old World biogeographical realms.</p>
The diversity of maternal-age effects upon pre-adult survival across animal species
Maternal senescence is the detrimental effect of increased maternal age on offspring performance. Despite much recent interest given to describing this phenomenon, its distribution across animal species is poorly understood. A review of the published literature finds that maternal age affects pre-adult survival in 252 of 272 populations (93%) representing 97 animal species. Age effects tended to be deleterious in invertebrates and mammals, including humans, confirming the presence of senescence. However, bird species were a conspicuous exception, as pre-adult survival tended to increase with maternal age in surveyed populations. In all groups, maternal-age effects became more negative in older mothers. Invertebrates senesced faster than vertebrates, and humans aged faster than non-human mammals. Within invertebrates, lepidopterans demonstrated the most extreme rates of maternal-effect senescence. Among the surveyed studies, phylogeny, life history and environment (e.g. laboratory versus wild populations) were tightly associated; this made it difficult to make confident inferences regarding the causes of diversity for the phenomenon. However, we provide some testable suggestions, and we observe that some differences appear to be consistent with predictions from evolutionary theory. We discuss how future work may help clarify ultimate and proximate causes for this diversity.
Do avian species survive better on islands?
<p>Island species are often predictably different from their mainland counterparts. Milder climates and reduced predation risk on islands have been involved to explain shifts in body size and a suite of life history traits such as clutch size and offspring growth rate. Despite the key role of adult survival on risk taking and reproduction, the prediction that living on islands increases adult survival has yet to be tested systematically. I gathered data on adult annual apparent survival from island and mainland year-round resident species of birds from around the world. With this large dataset (697 species), I found that species of birds living on islands showed higher apparent survival than their mainland counterparts in the two hemispheres and at all latitudes controlling for several known predictors of adult survival including body size, clutch size, and breeding system. These results shed light on the ecological factors that influence survival on islands and extend the life history island syndrome to adult survival.</p>
Intrinsic biotic factors and micro-site conditions drive seedling survival in a species with masting reproduction
<p><span>1. Seedling recruitment following a masting event, where more fruits are produced in synchrony and intermittently compared to other species, plays a crucial role in determining species diversity and community structure. Such seedling recruitment can be super-abundant, but followed by high mortality shortly thereafter. Differences in biotic factors such seedling characteristics, competition and herbivory, and micro-site specific abiotic factors could determine seedling fate in space and time. </span></p> <p><span>2. In a subtropical forest in south China, for two years using censuses conducted every one to two months, we monitored 40 seed traps and 120, 1 m<sup>2</sup> quadrats in five 1-hectare plots located from 1400 m to 1850 m asl for the masting maple species, <i>Acer campbellii </i>subsp.<i> sinense </i>(Pax) P.C.DeJong . We measured biotic – conspecific and heterospecific seedling density, species richness, herbivory, seedling height and leaf number – and abiotic – canopy openness, slope, and aspect – factors to assess drivers of seedling survival and evaluated <i>A. campbellii </i>subsp.<i> sinense </i>presence in the soil seed bank (SSB).</span></p> <p><span>3. The masting seed dispersal peak and seedling emergence peak occurred between October 2017 and January 2018, and May 2018, respectively. Of 688 selected seedlings, mortality was 92.7% within one year. No seeds were observed in the SSB. Seedling height and leaf number positively affected seedling survival, while seed placement as measured by aspect also showed effects on survival. Conspecific and heterospecific density and herbivory did not show any clear effect. Higher probabilities of seedling survival were found in areas with larger canopy openness (≥ 12% canopy gap size) and in steeper micro-sites (≥ 35°). </span></p> <p><span>4. <i>Synthesis</i>. Masting is mainly studied as a population level phenomenon from the fruiting tree perspective. Our study of individual seedling fate revealed that intrinsic biotic factors and seed placement were key drivers of survival. Although biotic determinants such as competition from conspecifics or heterospecifics or herbivory did not determine survival, their ubiquitous presence may be an underlying equalizer in community dynamics where seedlings that overcome biotic pressures, if placed at the right micro-site, are at better odds at being recruited to the next life history stages. </span></p>
Data from: Range expansion is associated with increased survival and fecundity in a long-lived bat species
The speed and dynamics of range expansions shape species distributions and community composition. Despite the critical impact of population growth rates for range expansion, they are neglected in existing empirical studies, which focus on the investigation of selected life history traits. Here, we present an approach based on non-invasive genetic capture-mark-recapture data for the estimation of adult survival, fecundity, and juvenile survival, which determine population growth. We demonstrate the reliability of our method with simulated data, and use it to investigate life history changes associated with range expansion in 35 colonies of the bat species Rhinolophus hipposideros. Comparing the demographic parameters inferred for 19 of those colonies which belong to an expanding population with those inferred for the remaining 16 colonies from a non-expanding population reveals that range expansion is associated with higher net reproduction. Juvenile survival was the main driver of the observed reproduction increase in this long-lived bat species with low per capita annual reproductive output. The higher average growth rate in the expanding population was not associated with a trade-off between increased reproduction and survival, suggesting that the observed increase in reproduction stems from a higher resource acquisition in the expanding population. Environmental conditions in the novel habitat hence seem to have an important influence on range expansion dynamics, and warrant further investigation for the management of range expansion in both native and invasive species.
Data from: Deconstructing an infamous extinction crisis: Survival of Partula species on Moorea and Tahiti
Eleven of eighteen Society Island Partula species endemic to the Windward Island subgroup (Moorea and Tahiti) have been extirpated by an ill-advised biological control program. The conservation status of this critically endangered tree snail radiation is of considerable import, but is clouded by taxonomic uncertainty due to the extensive lack of congruence among species designations, diagnostic morphologies and molecular markers. Using a combination of museum, captive, and remnant wild snails, we obtained the first high-resolution nuclear genomic perspective of the evolutionary relationships and survival of fourteen Windward Island Partula species, totaling 93 specimens. We analyzed ~1,607-28,194 nuclear genomic loci collected with the double digest Restriction-site Associated sequencing method. Results from phylogenomic trees, species estimation, and population assignment tests yielded monophyly of the Windward Island subgroup. Within this group, two well-supported clades encompassing five species complexes were recovered. Clade 1 was restricted to Tahiti and contained two species complexes: "P. affinis" (three species) and "P. otaheitana" (five species). Clade 2 occurred on Moorea and on Tahiti and consisted of three species complexes: one Tahitian, "P. clara/P. hyalina"; the other two, "P. taeniata" (three species) and "P. suturalis" (six species), Moorean. Our genomic results largely corroborated previous mitochondrial DNA survival estimates for Moorea and Tahiti, with all five species complexes having members surviving in captivity and/or as remnant wild populations, although the details vary in each case. Continued, proactive conservation and management may yet ensure a phylogenetically-representative survival of the fabled Partula species of Moorea and Tahiti.
Data from: Nest survival modeling using a multi-species approach in forests managed for timber and biofuel feedstock
1. Switchgrass (Panicum virgatum) intercropping is a novel forest management practice for biomass production intended to generate cellulosic feedstocks within intensively managed loblolly pine-dominated landscapes. These pine plantations are important for early-successional bird species, as short rotation times continually maintain early successional habitat. We tested the efficacy of using community models compared to individual surrogate species models in understanding influences on nest survival. We analysed nest data to test for differences in habitat use for 14 bird species in plots managed for switchgrass intercropping and controls within loblolly pine (Pinus taeda) plantations in Mississippi, USA. 2. We adapted hierarchical models using hyper-parameters to incorporate information from both common and rare species to understand community-level nest survival. This approach incorporates rare species that are often discarded due to low sample sizes, but can inform community-level demographic parameter estimates. We illustrate use of this approach in generating both species-level and community-wide estimates of daily survival rates for songbird nests. We were able to include rare species with low sample size (minimum n = 5) to inform a hyper-prior, allowing us to estimate effects of covariates on daily survival at the community level, then compare this with a single-species approach using surrogate species. Using single species models, we were unable to generate estimates below a sample size of 21 nests per species. 3. Community model species-level survival and parameter estimates were similar to those generated by five single species models, with improved precision in community model parameters. 4. Covariates of nest placement indicated that switchgrass at the nest site (< 4 m) reduced daily nest survival, although intercropping at the forest stand level increased daily nest survival. 5. Synthesis and applications. Community models represent a viable method for estimating community nest survival rates and effects of covariates while incorporating limited data for rarely detected species. Intercropping switchgrass in loblolly pine plantations slightly increased daily nest survival at the research plot scale (0.1 km2), although at a local scale (50 m2) switchgrass negatively influenced nest survival. A likely explanation supported by previous research is intercropping shifted community composition, favouring species with greater disturbance tolerance.
Data from: Simultaneous declines in summer survival of three shorebird species signals a flyway at risk
There is increasing concern about the world's animal migrations. With many land-use and climatological changes occurring simultaneously, pinning down the causes of large-scale conservation problems requires sophisticated and data-intensive approaches. Declining shorebird numbers along the East Asian–Australasian Flyway, in combination with data on habitat loss along the Yellow Sea (where these birds refuel during long-distance migrations), indicate a flyway under threat. If habitat loss at staging areas indeed leads to flyway-wide bird losses, we would predict that: (i) decreases in survival only occur during the season that birds use the Yellow Sea, and (ii) decreases in survival occur in migrants that share a reliance on the vanishing intertidal flats along the Yellow Sea, even if ecologically distinct and using different breeding grounds. Monitored from 2006–2013, we analysed seasonal apparent survival patterns of three shorebird species with non-overlapping Arctic breeding areas and considerable differences in foraging ecology, but a shared use of both north-west Australian non-breeding grounds and the Yellow Sea coasts to refuel during northward and southward migrations (red knot Calidris canutus piersmai, great knot Calidris tenuirostris, bar-tailed godwit Limosa lapponica menzbieri). Distinguishing two three-month non-breeding periods and a six-month migration and breeding period, and analysing survival of the three species and the three seasons in a single model, we statistically evaluated differences at both the species and season levels. Whereas apparent survival remained high in north-west Australia, during the time away from the non-breeding grounds survival in all three species began to decline in 2011, having lost 20 percentage points by 2012. By 2012 annual apparent survival had become as low as 0.71 in bar-tailed godwits, 0.68 in great knots and 0.67 in red knots. In a separate analysis for red knots, no mortality occurred during the migration from Australia to China. In the summers of low summer survival, weather conditions were benign in the Arctic breeding areas. We argue that rapid seashore habitat loss in the Yellow Sea is the most likely explanation of reduced summer survival, with dire (but uncertain) forecasts for the future of these flyway populations. This interpretation is consistent with recent findings of declining shorebird numbers at seemingly intact southern non-breeding sites. Policy implications. Due to established economic interests, governments are usually reluctant to act for conservation, unless unambiguous evidence for particular cause–effect chains is apparent. This study adds to an increasing body of evidence that habitat loss along the Yellow Sea shores explains the widespread declines in shorebird numbers along the East Asian–Australasian Flyway and threatens the long-term prospects of several long-distance migrating species. To halt further losses, the clearance of coastal intertidal habitat must stop now.
Data from: Haldane's rule revisited: do hybrid females have a shorter lifespan? Survival of hybrids in a recent contact zone between two large gull species
Haldane's rule predicts that particularly high fitness reduction should affect the heterogametic sex of interspecific hybrids. Despite the fact that hybridization is widespread in birds, survival of hybrid individuals is rarely addressed in studies of avian hybrid zones, possibly because of methodological constraints. Here, having applied capture-mark-recapture models to an extensive, 19-year-long dataset on individually marked birds, we estimate annual survival rates of hybrid individuals in the hybrid zone between herring (Larus argentatus) and Caspian (L. cachinnans) gulls. In both parental species, males have a slightly higher survival rate than females (model-weighted mean ± SE: herring gull males 0.88 ± 0.01, females 0.87 ± 0.01, Caspian gull males 0.88 ± 0.01, females 0.87 ± 0.01). Hybrid males do not survive for a shorter time than non-hybrid ones (0.88 ± 0.01), whereas hybrid females have the lowest survival rate among all groups of individuals (0.83 ± 0.03). This translates to a shorter adult (reproductive) lifespan (on average by 1.7-1.8 years, i.e. ca 25%) compared to non-hybrid females. We conclude that, in line with Haldane's rule, the lower survival rate of female hybrids may contribute to selection against hybrids in this hybrid zone.
Data from: Impact of disease on the survival of three commercially fished species
Recent increases in emergent infectious diseases have raised concerns about the population stability of some marine species. The complexity and expense of studying diseases in marine systems often dictate that conservation and management decisions are made without quantitative data on population-level impacts of disease. Mark-recapture is a powerful, underutilized, tool for calculating impacts of disease on population size and structure, even in the absence of etiological information. We applied logistic regression models to mark-recapture data to obtain estimates of disease-associated mortality rates in three commercially-important marine species: snow crab (Chionoecetes opilio) in Newfoundland, Canada, that experience sporadic epizootics of bitter crab disease; striped bass (Morone saxatilis) in the Chesapeake Bay, USA, that experience chronic dermal and visceral mycobacteriosis; and American lobster (Homarus americanus) in the Southern New England stock, that experience chronic epizootic shell disease. All three diseases decreased survival of diseased hosts. Survival of diseased adult male crabs was 1% (0.003 – 0.022, 95% CI) that of uninfected crabs indicating nearly complete mortality of infected crabs in this life stage. Survival of moderately and severely diseased striped bass (which comprised 15% and 11% of the population, respectively) was 84% (70 – 100%, 95% CI), and 54% (42- 68%, 95% CI) and that of healthy striped bass. The disease-adjusted yearly natural mortality rate for striped bass was 0.29, nearly double the previously accepted value, which did not include disease. Survival of moderately and severely diseased lobsters was 30% (15 – 60%, 95% CI) that of healthy lobsters and survival of mildly diseased lobsters was 45% (27 – 75%, 95% CI) that of healthy lobsters. High disease mortality in ovigerous females may explain the poor recruitment and rapid declines observed in this population. Stock assessments should account for disease-related mortality when resource management options are evaluated.
Data from: Designed habitat heterogeneity on green roofs increases seedling survival but not plant species diversity
Urban areas benefit from the ecosystem services provided by low input green roofs. However, limited substrate depth on these green roofs creates challenging conditions for plant establishment and survival, leading to industry reliance on non-native succulents. Through a green roof and glasshouse study, we assessed the impact of simple design modifications to the green roof surface, including redistribution of substrate and addition of logs and pebble piles, on both substrate temperature and moisture content. We added seeds of 26 native species and quantified seedling density, species richness and composition over a single growing season. Overall effects of microsite heterogeneity on species diversity were assessed using species accumulation curves. The modifications altered substrate temperature and moisture. Deep substrate (10-12 cm) and the presence of surface features reduced temperature by 14.6°C and, while surface features had mixed effects on substrate moisture on the green roof, pebble piles slowed moisture loss during a six-week drought in the glasshouse. Following drought conditions, seedling density and species richness was greatest, relative to seeded controls, where substrate was deep on the green roof and where pebbles were present in glasshouse modules, despite high mortality overall. Design modifications did not result in differentiation of seedling communities among different microsite types. Species accumulation curves showed no difference in species richness between aggregates of modified vs. unaltered microsites. Synthesis and applications. Redistribution of green roof substrate and the addition of logs and pebble piles altered microsite conditions and created habitat heterogeneity on a green roof. These design modifications represent a minimalist strategy to ameliorate growing conditions, improve seedling survival and decrease species loss on shallow substrate green roofs.
FIGURE 6 in Flightless Catapionus (Coleoptera: Curculionidae: Entiminae) in Southwest China survive the Holocene trapped on mountaintops: new species, unknown phylogeny and clogging taxonomy
FIGURE 6. Catapionus mopsus sp. n., female, Mt. Gongga, specimen 2741. A–D: habitus; E–F: sternites 8, 9 and spermatheca (E: ventral; F: dorsal); G: sternite 8; H: spermatheca.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
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