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63
datasets available to search
ShareScore release 0.9.0
Dataset results
63 results for “supercoiling”
Transcription forms and remodels supercoiling domains unfolding large scale chromatin structures [Agilent ChIP-chip]
GEO Series GSE43450. Homo sapiens. 28 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Control of RNA polymerase II promoter-proximal pausing by DNA supercoiling
GEO Series GSE141800. Homo sapiens. 26 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
RNA Polymerase-II-generated DNA supercoils destabilize nucleosomes
GEO Series GSE47795. Drosophila melanogaster. 25 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Global gene transcription analysis in response to changes in chromosome supercoiling in Streptomyces coelicolor
GEO Series GSE132702. Streptomyces coelicolor. 13 samples. Type: Expression profiling by high throughput sequencing.
Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils [RNA-seq]
GEO Series GSE235559. Saccharomyces cerevisiae. 2 samples. Type: Expression profiling by high throughput sequencing.
Transcription forms and remodels supercoiling domains unfolding large scale chromatin structures
GEO Series GSE43451. Homo sapiens. 41 samples. Type: Genome binding/occupancy profiling by genome tiling array; Expression profiling by array.
DNA topoisomerase and supercoil accumulation across yeast genome
GEO Series GSE114410. Saccharomyces cerevisiae. 68 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils.
GEO Series GSE235560. Saccharomyces cerevisiae. 75 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Type II topoisomerases shape multi-scale 3D chromatin folding in regions of positive supercoils
GEO Series GSE255739. Homo sapiens. 42 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Emergence of Supercoiling-Mediated Regulatory Networks through the Evolution of Bacterial Chromosome Organization: Supplementary Material
<p>Data generated using <a href="https://gitlab.inria.fr/tgrohens/evotsc">EvoTSC</a> and used in the Supplementary Material to the upcoming PLOS computational biology paper.</p>
Novel fluorescence-based high-throughput method uncovers single-cell DNA supercoiling heterogeneity
GEO Series GSE137586. Salmonella enterica subsp. enterica serovar Typhimurium. 11 samples. Type: Expression profiling by high throughput sequencing.
Control of RNA polymerase II promoter-proximal pausing by DNA supercoiling [ChIP-seq]
GEO Series GSE141798. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
S. cerevisiae cells: control vs positive supercoiling accumulation in absence of telomere silencing after 0 and 120 min
GEO Series GSE18241. Saccharomyces cerevisiae. 6 samples. Type: Expression profiling by array.
Transcription-mediated supercoiling regulates genome folding and loop formation [RNA-Seq]
GEO Series GSE169476. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
The stringent response inhibits DNA replication initiation in E. coli by modulating supercoiling of oriC
GEO Series GSE128606. Escherichia coli K-12. 4 samples. Type: Expression profiling by high throughput sequencing.
Transcription dependent dynamic supercoiling is a short-range genomic force
GEO Series GSE43752. Homo sapiens. 15 samples. Type: Other; Genome variation profiling by genome tiling array.
An increase in negative supercoiling in bacteria reveals topology-reacting gene clusters and a homeostatic response mediated by the DNA topoisomerase I gene
GEO Series GSE77749. Streptococcus pneumoniae R6. 14 samples. Type: Expression profiling by array; Expression profiling by high throughput sequencing.
Human Smc5/6 recognizes transcription-generated positive DNA supercoils
GEO Series GSE231328. Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
High-resolution, genome-wide mapping of positive supercoiling in chromosomes [yChIP]
GEO Series GSE152881. Saccharomyces cerevisiae. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Type II topoisomerases shape multi-scale 3D chromatin folding in regions of positive supercoils (GapRUN).
GEO Series GSE255730. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.