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31
datasets available to search
ShareScore release 0.9.0
Dataset results
31 results for “synthetic communities”
Impact of phosphate limitation on PHBV production and microbial community dynamics fed with synthetic fermentation digestate [18S]
GEO Series GSE302521. activated sludge metagenome. 12 samples. Type: Other.
RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
GEO Series GSE87337. Arabidopsis thaliana. 144 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq of Arabidopsis thaliana seedlings growing axenically, or in the presence of different bacterial Synthetic Community treatments that induced different root morphology
GEO Series GSE131156. Arabidopsis thaliana. 15 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI]
GEO Series GSE87338. Arabidopsis thaliana. 104 samples. Type: Expression profiling by high throughput sequencing.
Impact of phosphate limitation on PHBV production and microbial community dynamics fed with synthetic fermentation digestate [ITS]
GEO Series GSE302520. activated sludge metagenome. 2 samples. Type: Other.
Long read genome assembly of species from the synthetic HAMBI bacterial community
<p>We present complete genome sequences of 30 bacterial species that can be used to construct defined synthetic communities that stably form in the laboratory under controlled conditions.</p><p>This repository contains the final genome assemblies, logs, reports/summaries, scripts, and associated computational methods. All genomes were circularized (or in the case of <i>Agrobacterium tumefaciens</i> properly linearized) with the recovery of some small plasmids.</p><p>30 Species from the HAMBI community were sent for Oxford Nanopore or PacBio HiFi sequencing at <a href="https://www.seqcenter.com/">SeqCenter</a> early November 2022. I assembled multiple subsets of the read data for each genome and generated consensus assemblies using <a href="https://github.com/rrwick/Trycycler">Trycycler</a>.</p><p>All sequence data is available under BioProject <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1047486">PRJNA1047486</a></p><p>This is a mirror of the repository here: <a href="https://gitlab.utu.fi/slhogl/hambiLongRead">https://gitlab.utu.fi/slhogl/hambiLongRead</a></p>
RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a 185-members bacterial synthetic community under full and low phosphate conditions
GEO Series GSE129395. Arabidopsis thaliana. 24 samples. Type: Expression profiling by high throughput sequencing.
Impact of phosphate limitation on PHBV production and microbial community dynamics fed with synthetic fermentation digestate [16S]
GEO Series GSE302519. activated sludge metagenome. 12 samples. Type: Other.
ChemProp2 Dataset: Investigating potential biotransformations with a panel of 45 Drugs on Synthetic Community (Com20) to elucidate Drug-Microbiome-Host Dynamics
<p>This dataset contains the examination of each of the 45 drugs on the synthetic community Com20, conducted at two distinct timepoints: initially (time 0) and after a 2-hour interval.<br>List of drugs: Ethopropazine, Methotrexate, Felodipine, Miconazole, Floxuridine, Nalidixic acid, Fluconazole, Niclosamide, Ketoconazole, Omeprazole, Lacidipine, Pentamidine isothionate, DMSO, Promethazine, Lansoprazole, Protriptyline, Loratadine, Sertindole, Loxapine, Simvastatin, L-Thyroxine, Streptozotocin, Metformin, Tamoxifen, Tazobactam, Doxorubicin, Telmisartan, Ofloxacin, Terfenadine, Oxolinic acid, Thioguanosine, Tobramycin, Tiratricol, Vancomycin, Water, Rivaroxoban, Metronidazole, Tolfenamic acid, Clarithromycin, Tribenoside, Norfloxacin, Zafirlukast, Montelukast, Sertraline, Fluoxetine, Clomipramin, Novobiocin</p>
ChemProp2 Dataset: Investigating potential biotransformations with a panel of 23 Drugs on Synthetic Community (Com20) to elucidate Drug-Microbiome-Host Dynamics
<p>Tested 23 drugs against Synthetic community (Com20) at two different timepoints (t=0, t= 2 hrs) to look for potential biotransformations<br><br>List of drugs tested:<br>Acarbose, Clemizole, Amlodipine, Clindamycin, Amoxicillin, Clomifen, Aprepitant, Clotrimazole, Avermectin B1, Diacerein, Azithromycin, Dicumarol, Control, Dienestrol, Benzbromarone, Dienogest, Ceterizin, Doxycycline hyclate, Chlorpromazine, Duloxetin, Chlorprothixene, Erythromycin, Cilnidipine, Ethinylestradiol<br><br>Samples were measured (in March 18/19, 2023) using an UHPLC-Q Exactive HF Orbitrap mass spectrometer, equipped with a C18 column, following the LC-MS/MS method.</p>
Transcriptome of a Synthetic Microbial Community
GEO Series GSE199797. Ruegeria pomeroyi DSS-3; Vibrio hepatarius; Thalassospira sp. HF15. 40 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.