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ShareScore release 0.9.0
Dataset results
54 results for “synthetic genomics”
Genome-Wide CRISPR Screen Identifies Multiple Synthetic Lethal Targets That Enhance KRAS (G12C) Inhibitor Efficacy
GEO Series GSE240120. Homo sapiens; Mus musculus. 65 samples. Type: Other; Expression profiling by high throughput sequencing.
Long read genome assembly of species from the synthetic HAMBI bacterial community
<p>We present complete genome sequences of 30 bacterial species that can be used to construct defined synthetic communities that stably form in the laboratory under controlled conditions.</p><p>This repository contains the final genome assemblies, logs, reports/summaries, scripts, and associated computational methods. All genomes were circularized (or in the case of <i>Agrobacterium tumefaciens</i> properly linearized) with the recovery of some small plasmids.</p><p>30 Species from the HAMBI community were sent for Oxford Nanopore or PacBio HiFi sequencing at <a href="https://www.seqcenter.com/">SeqCenter</a> early November 2022. I assembled multiple subsets of the read data for each genome and generated consensus assemblies using <a href="https://github.com/rrwick/Trycycler">Trycycler</a>.</p><p>All sequence data is available under BioProject <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1047486">PRJNA1047486</a></p><p>This is a mirror of the repository here: <a href="https://gitlab.utu.fi/slhogl/hambiLongRead">https://gitlab.utu.fi/slhogl/hambiLongRead</a></p>
Genome-Wide CRISPR Screen Identifies Multiple Synthetic Lethal Targets That Enhance KRAS (G12C) Inhibitor Efficacy [RNA-seq-human]
GEO Series GSE240111. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Genome-Wide CRISPR Screen Identifies Multiple Synthetic Lethal Targets That Enhance KRAS (G12C) Inhibitor Efficacy [scRNA-seq]
GEO Series GSE240118. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
CRISPR genome-wide synthetic lethality screens of KRAS-driven mouse pancreatic ductal adenocarcinoma cells
GEO Series GSE162065. Mus musculus. 8 samples. Type: Other.
A barcoded genome-scale library of inducible alleles reveals principles of synthetic gene control [Seq]
GEO Series GSE158318. Saccharomyces cerevisiae. 341 samples. Type: Expression profiling by high throughput sequencing; Other.
Genome-wide CRISPR-Cas9 screen identifies druggable synthetic lethality between LSD1 and MTORC1 in MLL-translocated AML
GEO Series GSE126486. synthetic construct; Homo sapiens. 28 samples. Type: Expression profiling by high throughput sequencing; Other.
An integrated toolkit for the analysis of synthetic cellular barcodes in the genome and transcriptome
GEO Series GSE246611. Mus musculus. 88 samples. Type: Expression profiling by high throughput sequencing; Other.
Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota
GEO Series GSE231841. unidentified soil bacteria; Arabidopsis thaliana. 6 samples. Type: Expression profiling by high throughput sequencing.
Synthetic reversed sequences reveal default genomic states [Yeast_RNAseq]
GEO Series GSE252473. Saccharomyces cerevisiae. 8 samples. Type: Expression profiling by high throughput sequencing.
A genome-wide analysis of human pluripotent stem cell-derived endothelial cells cultured in synthetic hydrogels compared to standard 2D or 3D cell culture platforms
GEO Series GSE93511. Homo sapiens. 48 samples. Type: Expression profiling by high throughput sequencing.
Synthetic reversed sequences reveal default genomic states [Yeast_ATACseq]
GEO Series GSE252468. Saccharomyces cerevisiae. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Synthetic genomic reconstitution reveals principles of mammalian Hox cluster regulation
GEO Series GSE190906. Mus musculus; Rattus norvegicus. 162 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Synthetic reversed sequences reveal default genomic states
GEO Series GSE252482. Saccharomyces cerevisiae; Mus musculus. 160 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Synthetic reversed sequences reveal default genomic states [mESC_ChIP-Seq]
GEO Series GSE252478. Mus musculus. 80 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Synthetic reversed sequences reveal default genomic states [mESC RNAseq]
GEO Series GSE252479. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide expression analysis of C. elegans nematodes engineered to stably express a Cas9-derived synthetic transcription factor, fed HT115 scrambled bacteria
GEO Series GSE202213. Caenorhabditis elegans. 6 samples. Type: Expression profiling by high throughput sequencing.
Synthetic regulatory genomics uncovers enhancer context dependence at the Sox2 locus
GEO Series GSE206863. Mus musculus. 434 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
Synthetic reversed sequences reveal default genomic states [Yeast_ChIPseq]
GEO Series GSE252472. Saccharomyces cerevisiae. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Synthetic reversed sequences reveal default genomic states [mESC_ATACseq]
GEO Series GSE252476. Mus musculus. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.