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52 results for “taxonomic catalog”
Figure 1 in The taxonomic catalog of the Brazilian fauna: Dermaptera and Phasmatodea (Insecta), with commentaries on species list, types, authorship and distribution
Figure 1. Number of species by biome: (A) Dermaptera; (B) Phasmatodea.
Taxonomic and functional annotations of the Integrated non-redundant Gene Catalog 9.9
<p>The Integrated non-redundant Gene Catalog (<strong>IGC</strong>) 9.9 is a database of 9.9 million genes from 1267 individual fecal samples together with the Homo sapiens database (MetaHIT project, grant agreement 201052). This repository contains the taxonomic and functional annotation of the IGC database.</p> <p><strong>full_taxonomy_MetaHIT99.tsv </strong>: Taxonomic assignment of proteins from IGC database with the sequence aligner DIAMOND against the non-redundant NCBI database, with an e-value threshold of 10<sup>-4</sup> </p> <p><strong>KEGG89_IGC_hs99.table</strong> : Functional annotation of proteins from IGC database with KEGG resource with an e-value threshold of 10<sup>-5</sup>, a bit-score threshold of 60 and using the sensitive mode of DIAMOND</p>
Supplementary material 4 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Brazilian states plus the Federal District, with approximate area and caddisfly species recorded (total number and endemic)
Supplementary material 5 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Unweighted pair-group average (UPGMA) dendrogram based on Jaccard dissimilarity index of the incidence data of Trichoptera in Brazilian biomes (A) and states (B) respectively
Supplementary material 2 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Six biomes in Brazil (as defined by IBGE 2004), with approximate area and caddisfly species recorded (total number and endemic).
Supplementary material 6 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Taxonomic diversity of caddisfly genera recorded in Brazil and main taxonomic efforts published until now, with special attention to species occurring in Brazil
Supplementary material 1 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
List of Trichoptera species recorded to Brazil until August 2019, indicating endemic species to the country and respective distributional record through biomes, hydrographic regions, and Brazilian states
Supplementary material 3 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Hydrographic Regions in Brazil (as defined by ANA 2015), with approximate area, number of main basins, and caddisfly species recorded (total number and endemic).
Supplementary material 1 from: Talamas EJ, Pham H-T (2017) An online photographic catalog of Platygastroidea (Hymenoptera) in the Institute of Ecology and Biological Resources (Hanoi, Vietnam), with some taxonomic notes. In: Talamas EJ, Buffington ML (Eds) Advances in the Systematics of Platygastroidea. Journal of Hymenoptera Research 56: 225-239. https://doi.org/10.3897/jhr.56.10214
Platygastroidea in IEBR : Explanation note: A table lists the species of Platygastroidea, the author of the species, how many specimens are present in IEBR, including type status, and collecting unit identifiers for specimens that have been photographed.
Prokaryotic gene catalog, prokaryotic Metagenome-Assembled Genomes (MAGs) and taxonomic profiling of metagenomic data of NEREA Augmented Observatory
<p>The NEREA_metaG directory is dedicated to the in-depth analysis of NEREA microbial communities using metagenomic sequencing data. </p> <p><strong>Gene catalog:</strong> This directory contains the gene catalog compiled from metagenomic data, which includes: Protein and nucleotide sequence files for genes; Cluster files grouping similar genes; Annotation files mapping genes to KEGG pathways; Normalized gene abundance profiles.</p> <div><strong>MAGs:</strong> Directory for Metagenome-Assembled Genomes (MAGs). It contains comprehensive annotation files for the MAGs, providing insights into gene functions, metabolic pathways, and other genomic features. It also contains the individual MAGs categorized by sample origin. Each MAG is stored in a compressed FASTA format.</div> <p><strong>mOTUs</strong>: Contains files related to microbial taxonomic units identified and quantified using the mOTUs profiler. </p>
Figure 9 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Figure 9 Number of caddisfly species described or reported to Brazil by year (from 1833 to July 2019).
Figures 1-3 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Figures 1-3 Map of Brazil in South America showing: (1) the six continental biomes following IBGE (2004); (2) the twelve hydrographic regions in the country following ANA (2015); (3) the 26 states plus the Federal District. For each geographic unity, the respective number of caddisfly species, total and endemic, is provided.
Figure 8 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Figure 8 Contribution of the ten most diverse caddisfly families to the total richness of Trichoptera in Brazil, in Atlantic Forest, and in Amazon Forest, respectively, indicating the proportion of endemic species for each family in each area.
Figures 4-7 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Figures 4-7 Adults of Brazilian caddisflies: (4) Macrostemum brasiliense (Fisher, 1970), the first caddisfly species described from Brazil, originally as Phryganea maculata Perty, 1833 (photo by FF Salles), Espirito Santo state; (5) Centromacronema auripenne (Rambur, 1842), a problematic taxon with several synonyms and in need of a taxonomic revision, Rio de Janeiro state; (6) Nectopsyche sp., an unidentified species of this diverse and poorly studied genus, Rio de Janeiro; (7) Marilia sp., an unidentified species of another genus in need of taxonomic revision, Amazonas.
Figure 12 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Figure 12 Unweighted pair-group average (UPGMA) dendrogram based on Jaccard dissimilarity index of the incidence data of Trichoptera in Brazilian hydrographic regions. Species recorded only in one region were removed from the analysis. Values near branches are bootstrap analyses with 10,000 pseudoreplicates. Dendrogram and bootstrap values were calculated in software PAST.
Figures 10-11 from: Santos APM, Dumas LL, Henriques-Oliveira AL, Souza WRM, Camargos LM, Calor AR, Pes AMO (2020) Taxonomic Catalog of the Brazilian Fauna: order Trichoptera (Insecta), diversity and distribution. Zoologia 37: 1-13. https://doi.org/10.3897/zoologia.37.e46392
Figures 10-11 Accumulation curves of caddisfly species described or reported to occur in Brazil by year (from 1833 to July 2019): (10) total; (11) considering the citizenship of the first author of the species name.
Figures 30-34 from: Talamas EJ, Pham H-T (2017) An online photographic catalog of Platygastroidea (Hymenoptera) in the Institute of Ecology and Biological Resources (Hanoi, Vietnam), with some taxonomic notes. In: Talamas EJ, Buffington ML (Eds) Advances in the Systematics of Platygastroidea. Journal of Hymenoptera Research 56: 225-239. https://doi.org/10.3897/jhr.56.10214
Figures 30-34 - Paridris genaris, female holotype (IEBR 0105). 30 head, mesosoma, metasoma, lateral view 31 head and mesosoma, dorsal view 32 mesosoma and T1, dorsolateral view 33 head, anterolateral view 34 metasoma, dorsal view. Scale bars in millimeters.
Figures 5-10 from: Talamas EJ, Pham H-T (2017) An online photographic catalog of Platygastroidea (Hymenoptera) in the Institute of Ecology and Biological Resources (Hanoi, Vietnam), with some taxonomic notes. In: Talamas EJ, Buffington ML (Eds) Advances in the Systematics of Platygastroidea. Journal of Hymenoptera Research 56: 225-239. https://doi.org/10.3897/jhr.56.10214
Figures 5-10 - Habroteleia dagavia, female holotype (IEBR 0143). 5 head, mesosoma, metasoma, lateral view 6 head and mesosoma, dorsal view 7 head, anterior view 8 mesoscutellum, metascutellum, propodeum, T1, dorsolateral view 9 metasoma, dorsal view 10 metasoma, ventrolateral view. Scale bars in millimeters.
Figures 1-4 from: Talamas EJ, Pham H-T (2017) An online photographic catalog of Platygastroidea (Hymenoptera) in the Institute of Ecology and Biological Resources (Hanoi, Vietnam), with some taxonomic notes. In: Talamas EJ, Buffington ML (Eds) Advances in the Systematics of Platygastroidea. Journal of Hymenoptera Research 56: 225-239. https://doi.org/10.3897/jhr.56.10214
Figures 1-4 - Dyscritobaeus microocellus, female holotype (IEBR 0164). 1 head, anterolateral view 2 head, mesosoma, metasoma, lateral view 3 metasoma, dorsal view 4 head and mesosoma, dorsal view. Scale bars in millimeters.
Figures 19-21 from: Talamas EJ, Pham H-T (2017) An online photographic catalog of Platygastroidea (Hymenoptera) in the Institute of Ecology and Biological Resources (Hanoi, Vietnam), with some taxonomic notes. In: Talamas EJ, Buffington ML (Eds) Advances in the Systematics of Platygastroidea. Journal of Hymenoptera Research 56: 225-239. https://doi.org/10.3897/jhr.56.10214
Figures 19-21 - Paridris striaefrons (=Paridris coorgensis), male holotype (IEBR 0103). 19 mesosoma and metasoma, dorsal view 20 antennae, mesosoma, metasoma, lateral view 21 mesosoma, lateral view. Scale bars in millimeters.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.