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390 results for “template”
Spreadsheet Template for Body Length Data for North American Beetles
<p>Body size data for North American beetles extracted from The Insects and Arachnids of Canada:</p> <p>Anderson, R.S., Peck, S.B., 1985. The insects and arachnids of Canada, Part 13. The Carrion Beetles of Canada and Alaska: Coleoptera: Silphidae and Agyrtidae. Research Branch Agriculture Canada Publication 1778: 1-121.</p> <p>Bright, D.E., 1976. The insects and arachnids of Canada, Part 2. The bark beetles of Canada and Alaska: Coleoptera: Scolytidae. Research Branch Agriculture Canada Publication 1576: 1-241. </p> <p>Bright, D.E., 1987. The insects and arachnids of Canada, Part 15. The Metallic Wood-boring Beetles of Canada and Alaska. Coleoptera: Buprestidae. Research Branch Agriculture Canada Publication 1810: 1-335.</p> <p>Bright, D.E., 1993. The insects and arachnids of Canada, Part 21. The Weevils of Canada and Alaska: Volume 1. Coleoptera: Curculionoidea, excluding Scolytidae and Curculionidae. Research Branch Agriculture Canada Publication 1882: 1-217.</p>
Excel data collection template on descriptive political representation in national parliaments of the projects Pathways to Power and InclusiveParl adapted for the ActEU project
<p>This file contains the empty data collection template and variable and value labels to code biographical data on legislators for WP4 in the ActEU project. It is an abbreviated version of the codebooks produced by the Pathways to Power project and by the InclusiveParl project.</p>
Quail (Coturnix japonica) brain MRI template and whole-brain atlas
<p>A population average MRI brain template computed from 20 male Japanese Quails and a manually segmented atlas containing 194 regions. </p> <p>In this Version 2:</p> <ul> <li>the nomenclature in the file <em>siwiaszczyk_LUT-ITK-SNAP_v2.txt</em> was updated</li> <li>one slice of one region was completed in the file <em>siwiaszczyk_atlas_v2.nii.gz.</em></li> </ul>
ARTE (Article Reproducibility Template & Environment) workflow folder structure
<p>Illustration of a suggested folder and file system for editing articles that are <strong>dynamic and reproducible</strong>.</p> <p>The <a title="TIER Protocol 4.0 Site" href="https://www.projecttier.org/tier-protocol/protocol-4-0/" target="_blank" rel="noopener"><strong>TIER Protocol 4.0</strong></a> served as the foundation for this proposal, which was intended to be modified in <strong>Quarto using Rstudio</strong>, for instance, then published on <a title="Article Template Exemple" href="https://phdpablo.github.io/article-template/" target="_blank" rel="noopener"><strong>GitHub Pages</strong></a>.</p> <p>An example of its deployment is provided here: <a title="Article Template Example" href="https://phdpablo.github.io/article-template/" target="_blank" rel="noopener">https://phdpablo.github.io/article-template/</a></p> <p>According to <a title="Original Article" href="https://periodicos.ufpe.br/revistas/index.php/politicahoje/article/view/245776" target="_blank" rel="noopener">Domingos and Batista's (2021)</a> suggested content (files) recommendations, the figure illustrates the design of the proposal while accounting for the three primary <strong>TIER Protocol 4.0</strong> folders (Data, Scripts, and Output). The proposal for the <strong>TIER Protocol 4.0</strong> was modified to take into account that the research narrative would be edited in a <a title="Site Quarto" href="https://quarto.org/docs/guide/" target="_blank" rel="noopener"><strong>dynamic Quarto-type document</strong></a> (*.qmd), published on <a title="Article Template Example" href="https://phdpablo.github.io/article-template/" target="_blank" rel="noopener">GitHub Pages</a> (docs/) following Rstudio rendering, and potentially even produce a .pdf file of the article; <strong>*.qmd </strong> denotes a collection of <strong>Quarto files </strong>containing the standard sections of a scientific article (Introduction, Theoretical Framework, Methods, etc.); the other folders indicated in the root (adm, docker, renv) are for project management and for controlling dependencies and the environment, if adopted by the researcher.</p> <p>Visit the project repository at <a title="GitHub Repository" href="https://github.com/phdpablo/article-template/" target="_blank" rel="noopener">https://github.com/phdpablo/article-template/</a> for additional details. Visit <a title="OSF" href="https://osf.io/njdq5/" target="_blank" rel="noopener">https://osf.io/njdq5/</a> to view the template on OSF.</p>
GIRT-Data: Sampling GitHub Issue Report Templates
<p><strong>GIRT-Data</strong> is the first and largest dataset of <strong>issue report templates (IRTs)</strong> in both YAML and Markdown format. This dataset and its corresponding open-source crawler tool are intended to support research in this area and to encourage more developers to use IRTs in their repositories. The stable version of the dataset, containing <code>1_084_300</code> repositories, that <code>50_032</code> of them support IRTs.</p> <p>For more details see the GitHub page of the dataset: <a href="https://github.com/kargaranamir/girt-data">https://github.com/kargaranamir/girt-data</a></p> <p><br> The dataset is accepted for <a href="https://conf.researchr.org/track/msr-2023/msr-2023-data-showcase">MSR 2023</a> conference, under the title of "GIRT-Data: Sampling GitHub Issue Report Templates" <a href="https://scholar.google.com/scholar?q=GIRT-Data:+Sampling+GitHub+Issue+Report+Templates">Search in Google Scholar</a>.</p>
"Canvas BM" Digital Business Model Template Repository
<p>The Digital Business Model Template Repository consists of 265 unique one-page, diverse business model compositions, constructed as variants or adaptations based on the reference Business Model Canvas (BMC) created by A. Osterwalder. Business Model Canvases are templates composed of key blocks (elements) of the business model, which are interconnected and ready to be filled with content. The process of acquiring templates through quantitative, and then qualitative research, was conducted from November 2020 to October 2022. Each identified template was verified for compliance with licensing rights. The thematic repository should be treated as a business guide, aiding in the selection of suitable tools for designing business models for specific organizations, as well as in the process of creating, analyzing, and modifying business model templates. The Digital Business Model Template Repository can be useful in both a scientific, research, didactic, and individual context, and can also be beneficial in business practice.</p>
MRI Brain Template and Atlas of the Mouse Lemur Primate Microcebus murinus
<p>MRI template and 120-region atlas for the mouse lemur primate Microcebus murinus.<br> <br> Generated from 34 animals aged 15-58 months old scanned at 7T using a T2-weighted sequence, resolution 115 × 115 × 230 µm. The code developed to create and manipulate the template has been refined into general procedures for registering small mammal brain MR images, available within a python module sammba-mri (SmAll-maMMals BrAin MRI; <a href="https://sammba-mri.github.io/">https://sammba-mri.github.io/</a>). The template was up-sampled to 91 µm isotropic for hand-segmentation of structures, and also used to create probability maps of grey matter, white matter and cerebro-spinal fluid.</p> <p>if used for publication please cite: </p> <p><strong>A 3D population-based brain atlas of the mouse lemur primate with examples of applications in aging studies and comparative anatomy</strong><br> Nachiket A Nadkarni, Salma Bougacha, Clément Garin, Marc Dhenain, Jean-Luc Picq<br> Jan 2019<br> <strong>NeuroImage</strong> 185, 85-95<br> DOI: 10.1016/J.NEUROIMAGE.2018.10.010<br> <a href="https://www.sciencedirect.com/science/article/pii/S1053811918319694">https://www.sciencedirect.com/science/article/pii/S1053811918319694</a></p>
JFRC2 Template Brain
<p>This single female brain was generated by Arnim Jenett (Janelia Farm Research Campus) and is stained with the neuropil marker nc82. <strong>If you make use of this data, please cite:</strong></p> <p><strong>A GAL4-Driver Line Resource for Drosophila Neurobiology</strong><br /> Arnim Jenett, Gerald M. Rubinemail, Teri-T.B. Ngo, David Shepherd, Christine Murphy, Heather Dionne, Barret D. Pfeiffer, Amanda Cavallaro, Donald Hall, Jennifer Jeter, Nirmala Iyer, Dona Fetter, Joanna H. Hausenfluck, Hanchuan Peng, Eric T. Trautman, Robert R. Svirskas, Eugene W. Myers, Zbigniew R. Iwinski, Yoshinori Aso, Gina M. DePasquale, Adrianne Enos, Phuson Hulamm, Shing Chun Benny Lam, Hsing-Hsi Li, Todd R. Laverty, Fuhui Long, Lei Qu, Sean D. Murphy, Konrad Rokicki, Todd Safford, Kshiti Shaw, Julie H. Simpson, Allison Sowell, Susana Tae, Yang Yu, Christopher T. Zugates<br /> http://dx.doi.org/10.1016/j.celrep.2012.09.011</p> <p>The original image had an XY resolution of 0.622088 microns × 0.622088 microns and a 1 micron slice spacing. It was then upsampled in Z to give isotropic voxels. When received from Janelia Farm the image had no spatial calibration and was in tif format. The image was opened in Fiji/ImageJ and the voxel size set to 0.622088 microns × 0.622088 microns × 0.622088 microns, based on a personal communication from Arnim Jenett and inspection of the image data associated with http://dx.doi.org/10.1016/j.celrep.2012.09.011 that is available at http://flweb.janelia.org/cgi-bin/flew.cgi. The image was then saved in gzip encoded nrrd format using the ImageJ Nrrd_Writer plugin.</p>
FCWB Template Brain
<p>The template brain (FCWB) was constructed by screening for whole brains within the FlyCircuit dataset, and manually selecting a pool of brains that appeared of good quality when the stacks were inspected. Separate average female and average male template brains were constructed from 17 and 9 brains, respectively using the CMTK (http://www.nitrc.org/projects/cmtk) avg_adm function which takes a single brain as a seed. After five iterations the resultant average male and average female brains were placed in an affine symmetric position within their image stacks so that a simple horizontal (x -axis) flip of either template brain resulted in an almost perfect overlap of left and right hemispheres. Finally the two sex-specific template brains were then averaged (with equal weight) to make an intersex template brain using the same procedure. Since the purpose of this template was to provide an optimal registration target for the flycircuit.tw dataset, no attempt was made to correct for the obvious disparity between the XY and Z voxel dimensions common to all the images in the dataset. The scripts used for the construction of the template are available at https://github.com/jefferislab/MakeAverageBrain.</p> <p>Images from FlyCircuit were obtained from the NCHC (National Center for High-performance Computing) and NTHU (National Tsing Hua University), Hsinchu, Taiwan. If you use this template brain, to acknowledge the original raw data, <strong>please ensure that you additionally cite</strong>:</p> <p>Three-dimensional reconstruction of brain-wide wiring networks in <em>Drosophila</em> at single-cell resolution</p> <p>Ann-Shyn Chiangemail, Chih-Yung Lin11, Chao-Chun Chuang11, Hsiu-Ming Chang11, Chang-Huain Hsieh11, Chang-Wei Yeh, Chi-Tin Shih, Jian-Jheng Wu, Guo-Tzau Wang, Yung-Chang Chen, Cheng-Chi Wu, Guan-Yu Chen, Yu-Tai Ching, Ping-Chang Lee, Chih-Yang Lin, Hui-Hao Lin, Chia-Chou Wu, Hao-Wei Hsu, Yun-Ann Huang, Jing-Yi Chen, Hsin-Jung Chiang, Chun-Fang Lu, Ru-Fen Ni, Chao-Yuan Yeh, Jenn-Kang Hwang</p> <p>Current Biology 2011, 21:1-11. http://dx.doi.org/10.1016/j.cub.2010.11.056</p>
Drosophila simulans template brains
<p>Male and female symmetric averaged templates (11 and 10 brains, respectively) and intersex template brain for <em>Drosophila simulans</em>. Voxel size: (0.461, 0.461, 1) micron.</p>
Drosophila melanogaster template brains
<p>Male and female symmetric averaged templates (18 and 14 brains, respectively) and intersex template brain for <em>Drosophila melanogaster</em>. Voxel size: (0.461, 0.461, 1) micron.</p>
A standardized method for the construction of tracer specific PET and SPECT rat brain templates: validation and implementation of a toolbox
<p>Data set used in "A standardized method for the construction of tracer specific PET and SPECT rat brain templates: validation and implementation of a toolbox"</p>
Photonics4All Bookmark Template
<p>This is a template of the bookmarks that have been developed within the project Photonics4All.<br> The purpose of the bookmarks for the project Photonics4All was to increase the public awareness of photonics and especially of the technological advances of photonics which have changed and improved everyday life (basic technology introduction). The bookmarks were used at all events when the public was not specifically scientific, such as at general fairs, Christmas markets or light events. It may also be used at lower schools, high schools and universities or delivered to teachers & pupils. In addition, it can be distributed to local authorities in order to bring forward to our politicians and elected people the importance of photonics for the future. This template can be uesed to create new bookmarks.</p>
Tomography Data for: Three-dimensional Nanoscale Metal, Metal Oxide and Semiconductor Frameworks through DNA-programmable Assembly and Templating
<p>This is data collected at the 3-ID Hard X-ray Nanoprobe beamline. This repository supports the following research article: </p><p>Data provided is the aligned dataset and reconstruction using a FISTA algorithm. Angles Collected -90 to +45 at 1 degree steps. </p><p><strong>Three-dimensional Nanoscale Metal, Metal Oxide and Semiconductor Frameworks through DNA-programmable Assembly and Templating</strong></p><p>By Aaron Michelson. </p><p> </p>
Mapping the core of the Tarantula Nebula with VLT-MUSE. III. A template for metal-poor starburst regions in the visual and far-ultraviolet
<p>Cumulative optical (VLT/MUSE) and far-ultraviolet (mix of HST empirical and ULLYSES templates) spectrum of NGC2070 (2x2 arcmin^2) presented in Figures 2 and 4, respectively, of Crowther & Castro (MNRAS in press, https://arxiv.org/abs/2311.07642) which should be cited if either dataset is used. </p><p>Contents:</p><p>MUSE.dat (ascii format, column 1 wavelength in Angstrom, column 2 flux in erg/s/cm^2/Ang). Further details of MUSE dataset is described in N. Castro et al. (2018 A&A 614 A147)</p><p>ULLYSES.dat (ascii format, column 1 wavelength in Angstrom, column 2 flux in erg/s/cm^2/Ang, some detector gaps). Further details of ULLYSES survey is described in R. Roman-Duval et al. (2020, Research Notes of AAS, 4, 205)</p>
Soil BON Earthworm Trait template
<p>Within the Soil BON Earthworm initiative, a trait template was developed, building largely on the one created for the BETSI database (Pey et al, 2014a, b). Similarly, the data template is composed of several leaflets:</p><ol><li>"readme": this leaflet contains all column names from the leaflet "template to fill with data" and provide the necessary information to properly fill the information needed.</li><li>"template to fill with data": this leaflet is a long-format table in which each line is a trait value from a specific reference, allowing multiple trait values of the same trait for the same species to account for intraspecific trait variability due to inter-population variability, geography or ontogeny</li><li>"drop down list": this leaflet is non-modifiable and contains the different lists from which trait values are taken (e.g. trait name) to avoid synonyms.</li></ol><p>Trait expression is highly influenced by the environment and metadata associated with any trait value is necessary. For certain traits, meta-data is especially important, such as burrow system characteristics that need to be linked to soil volume, density, moisture levels, or cast characteristics that need to be compared to the bulk soil. The trait template will be updated in the future to offer a solution to link single trait data and the metadata associated.</p>
Dataset of article: Synthesis of Dendritic ZSM‑5 Zeolite through Micellar Templating Controlled by the Amphiphilic Organosilane Chain Length
<p>Data used for preparation of the article : Synthesis of Dendritic ZSM‑5 Zeolite through Micellar Templating Controlled by the Amphiphilic Organosilane Chain Length</p> <p> Abstract of article: </p> <p>The synthesis of ZSM-5 zeolites by hydrothermal crystallization of protozeolitic nanounits functionalized with amphiphilic organosilanes of different chain length (Cn-N(CH3)2-(CH2)3-Si- (OCH3)3, n = 10, 14, 18 and 22) has been investigated. Well developed dendritic nanoarchitectures were achieved when using C14 and C18 organosilanes, exhibiting a radial and branched pattern of zeolitic nanounits aggregates. In contrast, although C10 and C22 organosilanes led to materials with hierarchical porosity, they lack of dendritic features. These differences have been linked to the formation of an amorphous mesophase at the gel preparation stage for the C14 and C18 samples, in which the surfactant micelles are covalently connected with the protozeolitic nanounits through siloxane bonds. The presence of the dendritic nanostructure positively impacts both the textural and catalytic properties of ZSM-5 zeolite. Thus, ZSM-5 (C14) and ZSM-5 (C18) samples exhibit the largest contribution of mesoporosity in terms of both surface area and pore volume. On the other hand, when tested as catalysts in the aldol condensation of furfural with cyclopentanone, which is an interesting reaction for the production of sustainable jet fuels, the highest catalytic activity is attained over the dendritic ZSM-5 materials due to their remarkable accessibility and balanced Brønsted/Lewis acidity.</p>
Data for High-confidence 3D template matching for cryo-electron tomography
<p>This repository contains supporting data to the manuscript: "High-confidence 3D template matching for cryo-electron tomography" by Sergio Cruz-León, et al. </p> <p>It contains an example to run high-confidence template matching with GAPSTOP-TM, supporting raw data to the manuscript and a jupyter notebook for data visualization. </p> <p> </p> <p>Contact information:<br>Name: Sergio Cruz-León, PhD<br>Institution: Department of Theoretical Biophysics, Max Planck Institute of Biophysics<br>Address: Max-von-Laue-Str. 3, 60438 Frankfurt am Main, Germany<br>Email: sergio.cruz@biophys.mpg.de</p>
Fate and detectability of rare gas hydride ions in nova ejecta: A case study with nova templates
<p>The electron-impact HeH+ rovibrational data at temperatures up to 20,000 K used in the paper: "Fate and detectability of rare gas hydride ions in Novae ejecta: A case study with Nova templates".</p>
Data generated for the publication: Keeping it in the family: Using protein family templates to rescue poor AlphaFold models unliked
<p>Data and manuscript of:</p> <p>Keeping it in the family: Using protein family templates to rescue low confidence AlphaFold2 models</p> <p>Francesco Costa1, Matthias Blum1 and Alex Bateman1</p> <ol> <li>European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton. CB10 1SD. UK</li> </ol> <ul> <li>results contains the workflow results;</li> <li>AF2_seed contains results of the comparison with AF2 run with multiple seeds;</li> </ul>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.