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Dataset results
83 results for “web tools”
AutoParams: An Automated Web-Based Tool To Generate Parameters for Molecular Dynamics Simulations
<p>Dataset of thirteen (13) compounds used to test the AutoParams webserver. Includes initial PDB files, generated parameters (mol2/frcmod files), and resulting AMBER-formatted MD inputs (prmtop/inpcrd). Additionally, includes 2D structure in PNG format and canonical SMILES string in .smi file format.</p>
Web-Based Simulation Tool For Self-Management Support In Type 1 Diabetes Mellitus
ClinicalTrials.gov study NCT04439903. IPD Sharing: NO. Countries: 1. Publications: 2.
An Evaluation of Innerview™, a Web-based Tool to Support the Integration of Mental Health in the Primary Care Setting
ClinicalTrials.gov study NCT02025647. IPD Sharing: Not stated. Countries: 1. Publications: 2.
A Tool for Product Derivation and Semi-Automatic Deployment of Web-Based Systems
<p>This paper presents a tool for product derivation and semi-automatic deployment of web-based systems. The tool focuses on cloned webbased systems implemented using the PHP language, which are refactored to become software product lines. The paper also reports the results of a case study of using the tool in the context of a large scale web-based system. Our findings show some preliminary evidence of the benefits of the tool to reduce: (i) the time of product derivation and deployment; and (ii) the manual effort to customize existing cloned web-based systems.<br> </p>
Data from: Reconstructing hyperdiverse food webs: gut content metabarcoding as a tool to disentangle trophic interactions on coral reefs
1. Anthropogenic stressors have strong impacts on ecosystems. To understand their influence, detailed knowledge about trophic relationships among species is critical. However, this requires both exceptional resolution in dietary assessments and sampling breadth within communities, especially for highly-diverse, tropical ecosystems. 2. We used gut content metabarcoding across a broad range of coral reef fishes (8 families, 22 species) in Mo'orea, French Polynesia to test whether this technique has the potential to capture the structure of a hyperdiverse marine food web. Moreover, we explored whether taxonomic groups (families) and traditional, broad-scale trophic assignments explained fish diet across four different metrics of quantifying predator-prey interactions. 3. Metabarcoding yielded a large number (4,341) of unique operational taxonomic units (i.e. prey) with high-resolution taxonomic assignments (i.e. often to the level of genus or species). We demonstrate that across multiple metrics, taxonomic group at the family level is a consistently better, albeit still weak, predictor of empirical trophic relationships than frequently-used, broad-scale functional assignments. Our method also reveals a complex trophic network with fine-scale partitioning among species, further emphasizing the importance of examining fish diets beyond broad trophic categories. 4. We demonstrate the capacity of metabarcoding to reconstruct diverse and complex food webs with exceptional resolution, a significant advancement from traditional food web reconstruction. Further, this method allows us to pinpoint the trophic niche of species with niche-based modelling, even across hyperdiverse species assemblages such as coral reefs. In conjunction with complementary techniques such as stable isotope analysis, applying metabarcoding to whole communities will provide unparalleled information about energy and nutrient fluxes and inform their susceptibility to disturbances even in the world's most diverse ecosystems.
Data for: Exploring Emerging Social Media: Acquiring, Processing, and Visualizing Data with Python and OSoMe Web Tools
<p>Data collected from Bluesky and Mastodon via streaming covering the period between 2024-06-25 and 2024-07-02. Entries contains any the of following terms: biden, trump, or debate. Data also contains embedding precalculated for each dataset. The data also contains embeddings pre calculcated for the datasets.</p>
What KOS can do, with the proper tools available. About AGROVOC, edited in VocBench and used in the AGRIS web application
<p>The AIMS (Agricultural Information Management Standards) team in FAO has been working for the last 12 years towards two goals:<br>● using Knowledge Organization Systems to create better Information<br>Systems, and<br>● developing tools to maintain and produce better Knowledge Organization<br>Systems.<br>Our talk will initially demonstrate AGRIS, the International Information System for Agricultural Science and Technology. AGRIS has been developed<br>from a bibliographical database to a Linked Open Data application with more than 6 million web pages on topics from Agricultural Science and Technology.<br>This development was made possible by exploiting the various Knowledge Organization Systems embedded in the bibliographical database, most<br>notably AGROVOC. Parallel to creating AGRIS Linked Open Data we developed the VocBench, an advanced tool to maintain and improve SKOS<br>vocabularies (and more). The newest feature of the VocBench is now the automatic alignment of different vocabularies. Our talk will show the<br>advanced features of VocBench, and also the underlying philosophy and community.</p>
FIGURE 8 in Gill arch and hyoid arch diversity and cypriniform phylogeny: Distributed integration of morphology and web-based tools
FIGURE 8. Higher-level familial relationships from the parsimony trees generated using Basal outgroups (Fig. 4). Node 1, 23: 0 1, 54: 0 1; Node 2, 9: 0 4, 17:0 1; Node 3, 10:0 1, 14:0 1, 19:0 1, 22:0 1, 25: 0 1, 27: 0 1, 39: 1 0, 40: 2 1, 43: 0 1, 47: 0 1, 61: 2 1; Node 4, 24: 2 0, 40: 2 0, 42: 0 1, 57: 0 1; Node 5, 19: 0 1, 20: 0 1; Node 6, 8: 1 0, 13: 1 0, 16:0 1, 30: 0 1, 38: 0 1, 49: 0 1, 55: 0 1, 60: 0 1, 61: 2 1; Node 7, 31: 0 1, 35: 1 0, 36: 1 0, 42: 1 0; Node 8, 11: 0 1, 22:0 1, 56: 0 1; Node 9, 12: 0 1, 14:0 1, 30: 1 0, 53: 2 0; Node 10, 16:1 0, 26: 0 1.
FIGURE 4 in Gill arch and hyoid arch diversity and cypriniform phylogeny: Distributed integration of morphology and web-based tools
FIGURE 4. Strict consensus tree using Basal outgroups (Appendix III) recovered from 584 equally parsimonious trees. Treelength=377; CI=0.233; RI=0.637. Nodal values indicate bootstrap support.
FIGURE 1 in Gill arch and hyoid arch diversity and cypriniform phylogeny: Distributed integration of morphology and web-based tools
FIGURE 1. Phylogenetic hypotheses of relationships of cypriniforms based on morphology. Higher-level taxon names follow Mayden et al. (2008); see Appendix I for name equivalencies with other studies. A. Phylogenetic relationships from Siebert (1987, Fig. 77). B. Conway & Mayden (2007, Fig. 5C). Psilorhynchus was considered a cyprinid by Siebert (1987). * represents the position of Vaillantella (Vaillantellidae).
FIGURE 5. Bayesian tree, 50 in Gill arch and hyoid arch diversity and cypriniform phylogeny: Distributed integration of morphology and web-based tools
FIGURE 5. Bayesian tree, 50% majority rule consensus using Saitoh et al. (2006) outgroups (Appendix III) recovered from 15,002 trees. Nodal values indicate posterior probabilities.
FIGURE 2 in Gill arch and hyoid arch diversity and cypriniform phylogeny: Distributed integration of morphology and web-based tools
FIGURE 2. Phylogenetic hypotheses of relationships of cypriniforms based on molecular data. A. Saitoh et al. (2006); B. Mayden et al. (2008).
FIGURE 3 in Gill arch and hyoid arch diversity and cypriniform phylogeny: Distributed integration of morphology and web-based tools
FIGURE 3. Strict consensus of parsimony tree using Saitoh et al. (2006) outgroups (Appendix III) recovered from 2,817 equally parsimonious trees. Treelength=292; CI=0.304; RI=0.734. Nodal values indicate bootstrap support.
Supplementary material 1 from: Scaccia N, Günther T, Lopez de Abechuco E, Filter M (2021) The Glossaryfication Web Service: an automated glossary creation tool to support the One Health community. Research Ideas and Outcomes 7: e70183. https://doi.org/10.3897/rio.7.e70183
The Glossaryfication Web Service: an automated glossary creation tool to support the One Health community
Evaluation of a Web-based Decision Aid Tool for Larynx Cancer (T3/T4) Patients.
ClinicalTrials.gov study NCT03292341. IPD Sharing: NO. Countries: 1. Publications: 2.
A Study to Evaluate the Effectiveness of a Web-based Tool for Fertility Preservation in Cancer Patients
ClinicalTrials.gov study NCT07038174. IPD Sharing: NO. Countries: 0. Publications: 1.
Web-based Treatment Information Tool for People With Advanced Pancreatic Cancer
ClinicalTrials.gov study NCT03632850. IPD Sharing: NO. Countries: 1. Publications: 27.
Web-based Tool to Improve Reporting of Randomized Controlled Trials
ClinicalTrials.gov study NCT01891448. IPD Sharing: Not stated. Countries: 2. Publications: 1.
Development of an Interactive Web-based Teaching Tool for in Vitro Fertilization (IVF) Patients
ClinicalTrials.gov study NCT01046188. IPD Sharing: Not stated. Countries: 1. Publications: 7.
A Pilot Study Evaluating Go NAP SACC's Web-based Nutrition Tool for Child Care
ClinicalTrials.gov study NCT02889198. IPD Sharing: NO. Countries: 1. Publications: 1.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.