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SKYSPECTRA: an opensource data package for worldwide spectral daylight
<p>SKYSPECTRA is an open-source data package comprising spectral daylight measurements collected from various sources worldwide. The dataset encompasses measurements from both long-term measurement sites and specific periods or experiments. </p> <h2>Terms of use</h2> <p>For use of the dataset in research cite the paper titled <strong>skyspectra: an opensource data package of worldwide spectral daylight, </strong>presented at the CIE conference 2023, Slovenia, September 18-20 2023. The paper details the schema of the data package and will be publicly available soon.</p> <blockquote> <p><strong>Balakrishnan, P.</strong>, Diakite-Kortlever, A., Dumortier, D., Hernández-Andrés, J., Kenny, P., Maskarenj, M., Pierson, C., Thorseth, A., Xue, P., & Knoop, M. (2023). <em>SKYSPECTRA: An Opensource Data Package of Worldwide Spectral Daylight</em>. In <em>Proceedings of 30th session of CIE Conference, </em>15–23 September 2023. Ljubljana, Slovenia. DOI:10.25039/x50.2023.OP026</p> </blockquote> <div> <div> <div> <h2>Funding </h2> <div> <div> <div> <p>This project is funded by the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Individual Fellowship (grant agreement No. 101032279)</p> <h2>Data availability </h2> <ul> <li>Measurement data is between <code>360 nm to 800 nm</code> wavelength</li> <li>Timestamps with solar elevation angle <code>equal to or above 15 degrees</code></li> <li>Timestamps for two dates in the months of <code>March, June, September, and December</code> (when available)</li> <li>Timestamps with <code>clear and overcast sky conditions</code> (when available)</li> <li>Locations-<code>Berlin, Beijing, Granada, Singapore, Vaulx en Velin</code> (updates of other locations are ongoing) </li> </ul> <h2>Data structure </h2> <p>Measurement datasets include four data frames or tables in .csv format, each representing a distinct type of spectral daylight measurements.</p> <ul> <li><code><strong>spectral_horizontal_irradiance.csv:</strong></code> spectral irradiance measurements of global and diffuse visible radiation recorded on a horizontal plane</li> <li><code><strong>spectral_tilt_irradiance.csv:</strong> </code>spectral irradiance measurements of global and diffuse visible radiation recorded on a tilted plane (not available currently)</li> <li><code><strong>spectral_patch_radiance.csv:</strong></code> spectral radiance measurements of visible radiation from patches of sky</li> <li><strong><code>spectral_direct_irradiance.csv:</code></strong> spectral irradiance measurements of visible radiation directly from the sun</li> </ul> <p>Supplementary datasets include four data frames or tables in .csv format, each representing additional information for each measurement. </p> <ul> <li><code><strong>meta_location.csv:</strong></code> information about the geographical location and immediate environment of where the measurements were taken</li> <li><code><strong>meta_weather.csv:</strong></code> information on sky conditions when the measurements were taken.</li> <li><code><strong>meta_sun_positions.csv:</strong></code> information about sun angles and true solar time when the measurements were taken.</li> <li><strong><code>meta_measurement_parameters.csv:</code></strong> information about specific measurement parameters used for each measurement.</li> </ul> <h2>Data collection</h2> <p>This data package contains a subset of the worldwide spectral daylight measurements collected to explore geographic variations in daylight spectral characteristics, an ongoing effort led by the CIE Technical Committee (TC 3-60). For more information on the data collection process and the templates used refer to the paper <em>skyspectra: an opensource data package of worldwide spectral daylight </em>mentioned above. </p> </div> </div> </div> </div> </div> </div>
Nutrient and stoichiometric time series measurements of decomposing coarse detritus in freshwaters worldwide from literature published between 1976-2020.
This data publication is a database of published estimates of nitrogen, phosphorus, and carbon content of decomposing coarse detritus though time in freshwater ecosystems worldwide. Nutrient content measurements are paired with estimates of detrital mass loss within decomposition time series (i.e., defined cohorts of decomposing material through time) with the goal of understanding patterns and drivers of temporal elemental dynamics of freshwater detritus. A systematic literature search for aquatic decomposition experiments conducted on 29 April 2020 generated 580 records (after trimming for duplicates and obvious relevance). From this literature pool, we extracted 810 decomposition time series and associated environmental data (e.g., temperature, water quality, detrital characteristics). Time series included in this synthesis include a range of detritus types (including terrestrial and aquatic plant material, carcasses, dung, and veneers), ecosystems (including streams, lakes, rivers, and wetlands), and settings (including natural ecosystems, field mesocosms, and laboratory microcosms).
Figure 22. Stenothoe valida Dana, 1852 in Minute but constant morphological differences within members of Stenothoidae: the Stenothoe gallensis group with four new members, keys to Stenothoe worldwide, a new species of Parametopa and Sudanea n. gen. (Crustacea: Amphipoda)
Figure 22. Stenothoe valida Dana, 1852, from Gulf of Guinea: Gn 2 female = second gnathopod of female, Gn 2ʹ partly enlarged; P 3, 4 = peraeopod 3, 4; Ep 3 = epimeral plate 3; Us = urosome; U 1, 2, 3 = uropods 1, 2, 3; T = telson.
Figure 8. Stenothoe andamanensis n in Minute but constant morphological differences within members of Stenothoidae: the Stenothoe gallensis group with four new members, keys to Stenothoe worldwide, a new species of Parametopa and Sudanea n. gen. (Crustacea: Amphipoda)
Figure 8. Stenothoe andamanensis n. sp., Andaman Islands: P 7 = peraeopod 7; U 1, 2, 3 male resp. female = uropods; T = telson.
Figure 14. Stenothoe himyara n in Minute but constant morphological differences within members of Stenothoidae: the Stenothoe gallensis group with four new members, keys to Stenothoe worldwide, a new species of Parametopa and Sudanea n. gen. (Crustacea: Amphipoda)
Figure 14. Stenothoe himyara n. sp., Red Sea. A 1, 2 = antennae; Mx 1, 2 = first and second maxillae; Md = mandible; Mxp = maxilliped; Gn 2 = second gnathopod female.
Figure 28. Sudanea inopinata n. g. n in Minute but constant morphological differences within members of Stenothoidae: the Stenothoe gallensis group with four new members, keys to Stenothoe worldwide, a new species of Parametopa and Sudanea n. gen. (Crustacea: Amphipoda)
Figure 28. Sudanea inopinata n. g. n. sp. female, Red Sea: A 1, 2 = antennae; Hd = head; Mx 2 = second maxilla; Md, Md' = mandible of both sides; Mxp = maxilliped; Gn 1 = first gnathopod; Gn 2 = second gnathopod.
Figure 4 in Minute but constant morphological differences within members of Stenothoidae: the Stenothoe gallensis group with four new members, keys to Stenothoe worldwide, a new species of Parametopa and Sudanea n. gen. (Crustacea: Amphipoda)
Figure 4. Stenothoe cf. crenulata Chevreux, 1908: male, 3 mm, Pacific Ocean 4°30ʹ N, 137° 10ʹE: A 1, 2 = antenna 1, 2; Gn 2 = male second gnathopod; U 3 = third uropod male; U 1, 2, 3 = uropod 1, 2, 3; T = telson.
Figure 13. Stenothoe clavetta n in Minute but constant morphological differences within members of Stenothoidae: the Stenothoe gallensis group with four new members, keys to Stenothoe worldwide, a new species of Parametopa and Sudanea n. gen. (Crustacea: Amphipoda)
Figure 13. Stenothoe clavetta n. sp., Bermuda: Us = urosome of male and female; U 1, 2, 3 = uropod 1, 2, 3.
Figure 9. Stenothoe clavetta n in Minute but constant morphological differences within members of Stenothoidae: the Stenothoe gallensis group with four new members, keys to Stenothoe worldwide, a new species of Parametopa and Sudanea n. gen. (Crustacea: Amphipoda)
Figure 9. Stenothoe clavetta n. sp., Bermuda: habitus male; Mx 1, 2 = maxilla 1, 2; Md = mandible; Mxp = maxilliped.
Figure 6 in First record of Longosomatidae (Annelida: Polychaeta) from Iceland with a worldwide review of diagnostic characters of the family
Figure 6. Schematic drawings (not to scale) following Laubier et al. (1972–73), showing lateral (above) and dorsal (below) views of four species of Heterospio. Heterospio mediterranea Laubier, Picard and Ramos, 1972–73, Heterospio reducta Laubier, Picard and Ramos, 1972–73, Heterospio peruana Borowski, 1994 and Heterospio angolana Bochert and Zettler, 2009. Arrows mark position of first elongated chaetiger: black, after original description; grey, new interpretation (see text for explanations). Chaetigers numbered below lateral view of each species.
Figure 1 in First record of Longosomatidae (Annelida: Polychaeta) from Iceland with a worldwide review of diagnostic characters of the family
Figure 1. Type localities and collection localities of described and undescribed species of Heterospio, respectively, arranged in ascending order by date of description: (1) Ehlers (1874); (2) Hartman (1944); (3) Knox (1960); (4) Hartman (1965); (5) Wu and Chen (1966); (6) and (7) Laubier et al. (1972–73); (8) Uebelacker (1984); (9) and (10) Borowski (1994); (11) Bochert and Zettler (2009). The BIOICE sampling area is indicated. (*) probably represents a different species.
Figure 4. Heterospio longissima Ehlers, 1874 in First record of Longosomatidae (Annelida: Polychaeta) from Iceland with a worldwide review of diagnostic characters of the family
Figure 4. Heterospio longissima Ehlers, 1874 sensu Hartman (1965): Specimens from BIOICE samples 2414 and 2474. (A, B) capillary chaetae (cc) and subuluncini (su) of CH13 and CH14; (C) capillary chaetae of CH13; (D–G) detail of distal end of subuluncini of CH11 to CH14; (H) detail of tip of subuluncini without distal appendage from CH14. Scale bars: A, B, 20 µm; C–G, 3 µm; H, 5 µm.
Figure 3. Heterospio longissima Ehlers, 1874 in First record of Longosomatidae (Annelida: Polychaeta) from Iceland with a worldwide review of diagnostic characters of the family
Figure 3. Heterospio longissima Ehlers, 1874 sensu Hartman (1965). Specimen from BIOICE sample 2414. (A–D) Chaetigers 11 to 14. Scale bars: A, 100 µm; B, 150 µm; C, 200 µm; D, 100 µm.
Foliar stoichiometry of woody plants worldwide
<p>This data includes foliar N, P, K % in DW of mature leaves in woody plants worldwide. It also contains the georeferenced information and specie. It gathers data from 230 published articles, TRY database (<a href="http://www.try-db.org/TryWeb/dp.php),">http://www.try-db.org/TryWeb/dp.php),</a> ICP forest database (<a href="http://icp-forests.net/page/data-requests),">http://icp-forests.net/page/data-requests),</a> Tundra Trait Team and the Catalan Forest Inventory (Gracia et al., 2004).</p>
Worldwide Fraxinus Genome Assemblies, Annotations, and Gene Families v0.2
<p>The worldwide <em>Fraxinus</em> genome project was conducted to assess the pathogenic resistance of 34 Ash tree species to Ash Dieback and Emerald Ash Borer. The project is led by Dr. Richard Buggs. v0.1 genomes are available at ashgenome.org and on ENA. As part of Josiah Seaman's PhD thesis, he improved the assembly of 13 genomes included here as v0.2. New de novo annotations, gene families, and all associated files are included for future studies and reproducibility. </p> <p>Annotations are done with GeMoMa using F. excelsior as a reference (Keilwagen et al. 2016). Gene families are defined as genes originating from a single copy at the last common ancestor with Solanum. Orthofinder outputs reconciled gene trees, aligned CDS, and gene families (Emms and Kelly 2015; Tekaia 2016). Species tree was calibrated based on fossil evidence using r8s, RAxML across 25,182,399 sites (SpeciesTreeAlignment.fa). More methods details can be found in the full Chapter two of Josiah Seaman's PhD thesis (2021).</p> <p>I'd be happy to talk with you if you'd like any additional information or help visualizing your genomic data. You can find the tools used to browse this data at https://fluentdna.com/ and http://graphgenome.org/ Contact me at josiah@newline.us</p>
FIG. 44 in An inventory of Bramble sharks Echinorhinus brucus (Bonnaterre, 1788) (Elasmobranchii, Echinorhinidae) in natural history collections worldwide for conservation status assessment
FIG. 44. — Echinorhinus brucus (Bonnaterre, 1788) in Venezuelan (Cumaná) collections: A-D, TNEC-MT (Entry 233).
FIG. 43 in An inventory of Bramble sharks Echinorhinus brucus (Bonnaterre, 1788) (Elasmobranchii, Echinorhinidae) in natural history collections worldwide for conservation status assessment
FIG. 43. — Echinorhinus brucus (Bonnaterre, 1788) in United States (Gainesville, Cambridge, Raleigh, New Port Richey and Washington D.C.) collections: A, B, UF103000 (Entry 223); B, UF 103001 (Entry 224); C, MCZ 39633 (Entry 225); D-H, NCSM 44134 (Entry 226); I, coll. PMH223-9 (Entry 228); J, coll. PMH223- 10 (Entry 229); K, USNM RAD107112-001 (Entry 232).
FIG. 42 in An inventory of Bramble sharks Echinorhinus brucus (Bonnaterre, 1788) (Elasmobranchii, Echinorhinidae) in natural history collections worldwide for conservation status assessment
FIG. 42. — Echinorhinus brucus (Bonnaterre, 1788) in United Kingdom (Penzance, London and Cambridge) collections (continuation): A, PZNAS unregistered (Entry 216); B, RCSL 1311Ba (Entry 220); C-F, UMZC CH50.1/1 (Entry 222).
FIG. 41 in An inventory of Bramble sharks Echinorhinus brucus (Bonnaterre, 1788) (Elasmobranchii, Echinorhinidae) in natural history collections worldwide for conservation status assessment
FIG. 41. — Echinorhinus brucus (Bonnaterre, 1788) in United Kingdom (Oxford) collections (continuation): A, OUMNH.ZC.314b (Entry 202); B, OUMNH.ZC.497a (Entry 203); C, OUMNH.ZC.499a (Entry 204); D, OUMNH.ZC.499b (Entry 205); E, OUMNH.ZC.896c (Entry 206); F, OUMNH.ZC.1099a (Entry 207); G, OUMNH. ZC.1099b (Entry 208); H, OUMNH.ZC.1396a (Entry 209); I, OUMNH.ZC.1396b (Entry 210); J, OUMNH.ZC.4319 (Entry 211), K, OUMNH.ZC.5428 (Entry 212); L, OUMNH registers; M, OUMNH.ZC.17347 (Entry 213); N, O, OUMNH.ZC.17618 (Entry 214).
FIG. 38 in An inventory of Bramble sharks Echinorhinus brucus (Bonnaterre, 1788) (Elasmobranchii, Echinorhinidae) in natural history collections worldwide for conservation status assessment
FIG. 38. — Echinorhinus brucus (Bonnaterre, 1788) in United Kingdom (London) collections (continuation): A, B, BMNH 1856.12.10.654 (Entry 188); C, BMNH register (Entries 188-193); D, BMNH 1909.9.3.26 (Entry 194).
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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