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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
SATB1 Regulates 3D Genome Architecture in T cells by Constraining Chromatin Interactions surrounding CTCF-binding sites [Hi-C]
GEO Series GSE198259. Homo sapiens. 6 samples. Type: Other.
CTCF Spec-seq
GEO Series GSE188166. synthetic construct. 10 samples. Type: Other.
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF [ATAC-seq]
GEO Series GSE234268. Mus musculus. 25 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart [4C-seq]
GEO Series GSE99118. Mus musculus. 19 samples. Type: Other.
Cell-type differential targeting of Setdb1 prevents aberrant CTCF binding, chromatin looping, and cis-regulatory interactions
GEO Series GSE184471. Mus musculus. 44 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
SATB1 Regulates 3D Genome Architecture in T cells by Constraining Chromatin Interactions surrounding CTCF-binding sites [CUT&Tag]
GEO Series GSE224728. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
H3K9 trimethylation in active compartments optimizes stimulus-regulated transcription by restricting usage of CTCF sites in SINE-B2 repeats [ATAC-Seq]
GEO Series GSE189970. Mus musculus. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Batf pioneers the reorganization of chromatin in developing effector T cells via Ets1-dependent recruitment of Ctcf [ATAC-seq]
GEO Series GSE123206. Mus musculus. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Hoxblinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia [ChIRP-seq]
GEO Series GSE269224. Mus musculus. 6 samples. Type: Other.
Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos [HiChIP]
GEO Series GSE205780. Mus musculus. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation II
GEO Series GSE288844. Mus musculus; Mus spretus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos [ChIP-seq]
GEO Series GSE205779. Mus musculus. 82 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Gibbin drives epithelial development by toggling CTCF binding and DNA methylation
GEO Series GSE163769. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells [CTCF-ChIP]
GEO Series GSE281633. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-VC.S2 ChIP-chip
GEO Series GSE20768. Drosophila melanogaster. 4 samples. Type: Genome binding/occupancy profiling by genome tiling array.
A negatively-charged region within C-terminal domain maintains proper CTCF DNA binding (RNA-Seq)
GEO Series GSE261212. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation III
GEO Series GSE146451. Mus musculus. 124 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Myeloid leukemia dependency MYNRL15 exemplifies class of CTCF-bound lncRNA loci [capture-C]
GEO Series GSE172237. Homo sapiens. 10 samples. Type: Other.
CTCF regulates positioning of the human cystic fibrosis gene in association with a histone deacetylase
GEO Series GSE29360. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by genome tiling array.
CTCF-RNA interactions orchestrate cell-specific chromatin loop organization [ChIP-seq]
GEO Series GSE287375. Mus musculus. 54 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.