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91,407 results for “Effects With / Effects Of”
Data for: Unmasking the Effects of Orthography, Semantics, and Phonology on 2AFC Visual Word Perceptual Identification
<p>This data was used in analyses for "Unmasking the Effects of Orthography, Semantics, and Phonology on 2AFC Visual Word Perceptual Identification".</p>
Spectrum data for calculation of biological effectiveness of proton beams
<p>Datasets used in Bellinzona, E.V.; Grzanka, L.; Attili, A.; Tommasino, F.; Friedrich, T.; Krämer, M.; Scholz, M.; Battistoni, G.; Embriaco, A.; Chiappara, D.; Cirrone, G.A.P.; Petringa, G.; Durante, M.; Scifoni, E. Biological Impact of Target Fragments on Proton Treatment Plans: An Analysis Based on the Current Cross-Section Data and a Full Mixed Field Approach. <em>Cancers</em> <strong>2021</strong>, <em>13</em>, 4768. https://doi.org/10.3390/cancers13194768</p>
Raw data from Qin et al. (2018) "Modeling the kinetics of hydrogen formation by zerovalent iron: Effects of sulfidation on micro- and nano-scale particles"
<p>Raw hydrogen concentration vs. time data from Qin, H., X. Guan, J. Z. Bandstra, R. L. Johnson, and P. G. Tratnyek (2018) “Modeling the kinetics of hydrogen formation by zerovalent iron: Effects of sulfidation on micro- and nano-scale particles” Environ. Sci. Technol. 52(23): 13887-13896. [10.1021/acs.est.8b04436]</p> <p>This manuscript reports a large set of new concentration vs. time data for dihydrogen (H2) produced by corrosion of granular zerovalent iron (i.e., the hydrogen evolution reaction, HER) in aqueous media relevant to groundwater remediation. Four alternative kinetic models are evaluated by fitting the data using global non-linear regression. Details are given in the main text and supporting information of the (open access) manuscript. </p> <p>The data provided here are in two formats: (i) a .csv file that contains only data and labels, and (ii) a .pxp file that includes the data and graphs (without fits) in the same layout as figures in the original manuscript. The .pxp file was prepared with Igor Pro 8.02 (https://www.wavemetrics.com).</p>
Data for the "Does prognostic seeding along flight tracks produce the desired effects of cirrus cloud thinning?" manuscript
<p>Tar file of the data used to prepare the plots and write the text in: "Does prognostic seeding along flight tracks produce the desired effects of cirrus cloud thinning?" manuscript for submission to ACP.</p> <p>A description of each netcdf file is provided in the README file. The format of each file is in netcdf4</p>
Analysis of variance for the effect of insecticides as a contact and systemic applications and Analysis of variance for the effect of insecticides tested under field condition
<p>Analysis of variance for the effect of insecticides as a contact and systemic applications and Analysis of variance for the effect of insecticides tested under field condition </p> <p>The mean number of <em>H. armigera</em> live larvae were transformed into square-root values before the statistical analysis. The one-way analysis of variance (ANOVA) was used for both transformed values under laboratory conditions. Means were compared using Fisher’s least significant differences (LSD) test at P< 0.05. Under field conditions, a two-way repeated measures analysis of variance (ANOVA) was used to determine the effects of insecticides and exposure time. The computations were carried out using GenStat (19th Edition, VSN International, UK). </p>
Dataset used for: Effectiveness of Acute Malnutrition Treatment at Health Center and Community Level with a Simplified, Combined Protocol in Mali: An Observational Cohort Study
<p>This dataset contains the variables used in the analysis of the body composition and outcomes of the Acute Malnutrition Treatment at Health Center and Community Level with a Simplified, Combined Protocol in Mali pilot study, from December 2018 to December 2021</p>
Data files for: The Urban Lightning Effect Revealed with Geostationary Lightning Mapper Observations
<p>Warm season (June, July, August; JJA) Geostationary Lightning Mapper (GLM) observations from 2018-2021. Original processing of 20-second Level 2 GLM packets into 5-min files and quality control performed by CPTEC/INPE. Complete description provided by Oda et al. (2022). Further processing conducted locally to isolate GLM flash data for the Southeast U.S., accumulate the 5-minute files into yearly and 4-year bins, and to derive total flash count ("flash"), flash days ("fday"), and average flashes per flash day ("fpfd").</p> <p>Included files:</p> <ul> <li>GOES-16 Full Disk <ul> <li>Yearly files containing all GLM data classes (flash, group, and event) with 5-minute timesteps</li> <li>Yearly files containing only GLM flash data with 5-minute timesteps</li> </ul> </li> <li>Southeast (lat-lon bounds: -96.00, -74.00, 41.00, 24.00) <ul> <li>Final 4-year aggregate file containing derived total lightning metrics ready for analysis in GIS</li> </ul> </li> </ul>
Raw and post-processed data for the microscopic investigation of the effect of random envelope fluctuations on phoneme-in-noise perception
<p>The current dataset consists of three main folders:</p> <ul> <li><strong>01-Stimuli/</strong>: Contains the three sets of noises (white noise, bump noise, MPS noise) for the 12 study participants (S01 to S12).</li> <li><strong>02-Raw-data/fastACI/</strong>: Contains the raw data as obtained for each participant, which are also available within the GitHub repository of the fastACI toolbox, using the same directory tree. The results for each (anonymised) participant (under: <strong>publ_osses2022b/data_SXX/1-experimental_results/</strong>) include their audiometric thresholds (folder: <strong>audiometry</strong>), the results for the Intellitest speech test (folder: <strong>intellitest</strong>), and for the phoneme-in-noise test /aba/-/ada/ for the three noises (savegame files in MAT format).</li> <li><strong>02-Raw-data/ACI_sim/</strong>: Contains the raw data as obtained for the artificial listener, i.e., the model osses2022a.m (available within the fastACI toolbox). Twelve sets of simulations (using the waveforms of participants S01 to S12) were run for the three types of test noises. The results of the simulations of the phoneme-in-noise test are stored in the savegame MAT files. The template derived from 100 repetitions of /aba/ and /aba/ at an SNR=-6 dB in white noise is also included (template-osses2022a-speechACI_Logatome-abda-S43M-trial-1-v1-white-2022-7-15-N-0100.mat). The same template was used in all simulations.</li> <li><strong>03-Post-proc-data/ACI_exp/</strong>: Auditory classification images (ACIs) derived from the participants' data (folder: <strong>ACI_exp</strong>) and from the simulations (folder: <strong>ACI_sim</strong>). For each participant (or artificial listener) there are three ACIs (MAT files) for each of the corresponding noises. Cross predictions are also included with performance predictions across 'participants' (Crosspred.mat, 12 cross predictions for each noise) or across 'noises' (Crosspred-noise.mat, 3 cross predictions for each participant). The cross predictions all have the same names but are stored in dedicated directories.</li> </ul> <p><strong>Use these data:</strong></p> <ol> <li>Download all these data, place them in a local directory of your computer. If you have MATLAB and you downloaded a local copy of the fastACI toolbox (open access at: <a href="http://github.com/aosses-tue/fastACI">GitHub</a>) you can recreate the figures of our paper.</li> <li>After initialising the toolbox (type 'startup_fastACI;', without quotation marks in MATLAB) and then type either of the following commands, to recreate the figure you want. To recreate the figures in the main text:</li> </ol> <pre><code class="language-javascript">publ_osses2022b_JASA_figs('fig1','zenodo'); publ_osses2022b_JASA_figs('fig2a','zenodo'); publ_osses2022b_JASA_figs('fig2b','zenodo'); publ_osses2022b_JASA_figs('fig3','zenodo'); publ_osses2022b_JASA_figs('fig4','zenodo'); publ_osses2022b_JASA_figs('fig5','zenodo'); publ_osses2022b_JASA_figs('fig6','zenodo'); publ_osses2022b_JASA_figs('fig7','zenodo'); publ_osses2022b_JASA_figs('fig8','zenodo'); publ_osses2022b_JASA_figs('fig8b','zenodo'); publ_osses2022b_JASA_figs('fig9','zenodo'); publ_osses2022b_JASA_figs('fig9b','zenodo'); publ_osses2022b_JASA_figs('fig10','zenodo');</code></pre> <p>To generate the figures of the supplementary materials (Appendix in the BioRxiv preprint):</p> <pre><code class="language-javascript">publ_osses2022b_JASA_figs('fig1_suppl','zenodo'); publ_osses2022b_JASA_figs('fig2_suppl','zenodo'); publ_osses2022b_JASA_figs('fig3_suppl','zenodo'); publ_osses2022b_JASA_figs('fig3b_suppl','zenodo'); publ_osses2022b_JASA_figs('fig4_suppl','zenodo'); publ_osses2022b_JASA_figs('fig4b_suppl','zenodo'); publ_osses2022b_JASA_figs('fig5_suppl','zenodo'); publ_osses2022b_JASA_figs('fig5b_suppl','zenodo');</code></pre> <p><strong>References:</strong></p> <ul> <li><strong>Preprint</strong>: Alejandro Osses, Léo Varnet. "A microscopic investigation of the effect of random envelope fluctuations on phoneme-in-noise perception." BioRxiv.</li> <li><strong>fastACI toolbox</strong>: Alejandro Osses, Léo Varnet. fastACI toolbox: the MATLAB toolbox for investigating auditory perception using reverse correlation (v1.2). Zenodo. doi:<a href="https://doi.org/10.5281/zenodo.7314014">10.5281/zenodo.7314014</a>. Supplement to: <a href="http://github.com/aosses-tue/fastACI/tree/v1.2">https://github.com/aosses-tue/fastACI/tree/v1.2</a></li> </ul>
Dataset and codebook for the article by Gaume J, Bertholet N, McCambridge J, et al. Effect of a Novel Brief Motivational Intervention for Alcohol-Intoxicated Young Adults in the Emergency Department: A Randomized Clinical Trial. JAMA Netw Open. 2022;5(10):e2237563. doi: 10.1001/jamanetworkopen.2022.37563
<p>Dataset and codebook for the article Gaume J, Bertholet N, McCambridge J, et al. <strong>Effect of a Novel Brief Motivational Intervention for Alcohol-Intoxicated Young Adults in the Emergency Department: A Randomized Clinical Trial</strong>. JAMA Netw Open. 2022;5(10):e2237563. doi: <a href="http://jamanetwork.com/article.aspx?doi=10.1001/jamanetworkopen.2022.37563">10.1001/jamanetworkopen.2022.37563</a></p> <p>The dataset contains all data needed to reproduce the results in the above cited article.</p> <p>Variable description and labels can be found in the codebook.</p> <p>Please refer to the published article and supplemental online content for further information about the data and the study procedures.</p>
Revisiting Interior Water Mass Responses to Surface Forcing Changes and the Subsequent Effects on Overturning in the Southern Ocean
<p>This dataset contains processed model data used in</p> <p>Tesdal, J.-E., A. MacGilchrist, G., Beadling, R. L., Griffies, S. M., Krasting, J. P., & Durack, P. J. (2023). Revisiting interior water mass responses to surface forcing changes and the subsequent effects on overturning in the Southern Ocean. Journal of Geophysical Research: Oceans, 128, e2022JC019105. <a href="https://doi.org/10.1029/2022JC019105">https://doi.org/10.1029/2022JC019105</a>.</p> <p>The above publication uses two coupled climate models (AOGCMs), GFDL-CM4 and GFDL-ESM4, to assess the impact of perturbations in wind stress and Antarctic ice sheet melting on the Southern Ocean meridional overturning circulation (SO MOC) and associated water mass transformations (WMT).</p> <p>The attached archive includes netCDF files to recreate all figures and tables in <a href="https://doi.org/10.1029/2022JC019105">Tesdal et al. (2023)</a>, including overturning streamfunction (moc), volume storage change (dVdt), surface water mass transformation (swmt), meridional volume transports (mvt) zonal mean potential density referenced to 2000 dbar (sigma2) and mixed layer depth (mld). These variables are derived from preindustrial control (piControl) and idealized perturbation runs of Antarctic melting (Antwater), wind stress (Stress), as well as the combination (Antwater-Stress) using the Flux-Anomaly-Forced Model Intercomparison Project (FAFMIP) protocol.</p> <p>The FAFMIP protocol (<a href="https://doi.org/10.5194/gmd-9-3993-2016">Gregory et al., 2016</a>) involves adding perturbations to the surface fluxes that are computed within the atmosphere-ocean general circulation model (AOGCM) from the state of the system (<a href="https://doi.org/10.1029/2005JC003421">Lowe and Gregory, 2006</a>; <a href="https://doi.org/10.1088/1748-9326/9/3/034004">Bouttes and Gregory, 2014</a>). The perturbations in this dataset were technically added as a flux adjustment similar to that formerly used in AOGCMs (<a href="https://doi.org/10.1007/BF01053472">Sausen et al., 1988</a>).</p> <p>The data files contain processed model output and do not include any raw model output. Model data from the piControl runs of CM4 and ESM4 are available at the Earth System Grid Federation archive (<a href="https://esgf-node.llnl.gov/projects/cmip6">https://esgf-node.llnl.gov/projects/cmip6</a>). The forcing fields (perturbations) used in the perturbation experiments can be found at <a href="https://github.com/becki-beadling/Beadling_et_al_2022_JGROceans">https://github.com/becki-beadling/Beadling_et_al_2022_JGROceans</a>. Python scripts and Jupyter notebooks to reproduce the tables and figures can be accessed at <a href="https://github.com/jetesdal/Tesdal_et_al_2023_JGROceans">https://github.com/jetesdal/Tesdal_et_al_2023_JGROceans</a>.</p> <p><strong>Contents</strong>:</p> <ul> <li>Overturning streamfunction (moc)</li> <li>Volume storage change (dVdt)</li> <li>Surface water mass transformation (swmt)</li> <li>Meridional volume transports (mvt) </li> <li>Zonal-mean potential density referenced to 2000 dbar (sigma2)</li> <li>Mixed layer depth (mld) </li> <li>Antarctic shelf mask</li> <li>Static grid files</li> </ul> <p><strong>Models</strong>:</p> <ul> <li>GFDL-CM4</li> <li>GFDL-ESM4</li> </ul> <p><strong>Simulations</strong>:</p> <ul> <li>Preindustrial control (piControl)</li> <li>Experiment with a 0.1 Sv freshwater perturbation entering at the Antarctic coast (Antwater)</li> <li>Experiment with zonal and meridional wind stress perturbations (Stress)</li> <li>Experiment with combined perturbation of both Antarctic melting and wind stress (Antwater-Stress)</li> </ul> <p><strong>NetCDF file name structure</strong>:<br> <model>_<simulation>_<member_id>_<domain>_<time_period>_<variable>.nc</p> <ul> <li>model: CM4, ESM4</li> <li>simulation: control, antwater, stress, antwaterstress</li> <li>member_id (only for antwater, stress, antwaterstress): 251, 290, 332 (CM4), 101, 151, 201 (ESM4)</li> <li>domain: global, so</li> <li>time_period: yyyy-yyyy (first year to last year)</li> <li>variable: e.g., moc_rho2_online_lores, dVdt_rho2_online_lores, swmt_sigma2_005, sigma2_jmd95_zmean</li> </ul>
Data from: Complex climate-mediated effects of urbanization on plant reproductive phenology and frost risk
<p>This dataset comprises crowdsourced data using digitized herbarium specimen images from two comprehensively digitized regional floras; the Consortium of Northeastern Herbaria (CNH; <a href="http://portal.neherbaria.org/portal/">http://portal.neherbaria.org/portal/</a>) and Southeast Regional Network of Expertise and Collections (SERNEC; <a href="http://sernecportal.org/portal/index.php">http://sernecportal.org/portal/index.php</a>) for 200 plant species in the eastern United States, and four reproductive phenophases (i.e., flowering, peak flowering, fruiting, and peak fruiting) extracted from the herbarium specimens with associated climate data from PRISM and human population density from US Census Bureau.</p>
The Effect of Soundscape Composition on Bird Vocalization Classification in a Citizen Science Biodiversity Monitoring Project
<p>This archive includes sound clips (.wav files) and associated mel-scale spectrograms of bird vocalizations for 54 species in Sonoma County, California, USA. These data were used for training and validating convolutional neural network (CNN) models for bird species detection. We also include xeno-canto training and validation mel spectrograms used to pretrain CNNs. Details on these data are explained in the paper by Clark et al. (2023) titled "The effect of soundscape composition on bird vocalization classification in a citizen science biodiversity monitoring project". These data are available for use without restrictions, with no warranty on data quality or utility for a given application. We request that any work that does use these data cite the Clark et al. (2023) paper.<br> <br> Clark, M.L., Salas, L., Baligar, S., Quinn, C., Snyder, R.L., Leland, D., Schackwitz, W., Goetz, S.J., Newsam, S. (2023). The effect of soundscape composition on bird vocalization classification in a citizen science biodiversity monitoring project. <em>Ecological Informatics</em>. <a href="https://doi.org/10.1016/j.ecoinf.2023.102065">https://doi.org/10.1016/j.ecoinf.2023.102065</a></p> <p>Associated code for training CNN models, performing inference, and applying post-classification corrections can be found in the GitHub archive <a href="https://github.com/pointblue/Soundscapes2Landscapes/tree/master/CNN_Bird_Species">https://github.com/pointblue/Soundscapes2Landscapes/tree/master/CNN_Bird_Species</a></p> <p>Raw sound data from the Soundscapes to Landscapes project are available upon request: Dr. Matthew Clark, matthew.clark@sonoma.edu</p> <p>These data were collected as part of the Soundscapes to Landscapes project (<a href="https://soundscapes2landscapes.org/">soundscapes2landscapes.org</a>), funded by NASA’s Citizen Science for Earth Systems Program (CSESP) 16-CSESP 2016-0009 under cooperative agreement 80NSSC18M0107.<br> <br> ----------------------------<br> This depository includes the following archives:</p> <ul> <li> <p>mel_specs.zip: contains 2-sec mel spectrograms split into training (“tr”), validation (“val”), testing (“test”) data for each target bird species (n = 54) used to fine-tune the CNNs. Select spectrogram files are appended with “aug” if they are augmented versions for the training data.</p> </li> <li> <p>wav.zip: contains the associated wav-format sound recordings used to generate the training, validation, testing mel spectrograms found in mel_specs.zip.</p> </li> <li> <p>Xeno-canto_pretrain.tar: contains 2-sec mel spectrograms split into training and validation data for 40 bird species used for CNN pre-training that were generated using a warbleR segmentation methodology described in the paper. The sound files used to generate these mel spectrograms came from the Kaggle competition, <a href="https://www.kaggle.com/datasets/imoore/xenocanto-bird-recordings-dataset">https://www.kaggle.com/datasets/imoore/xenocanto-bird-recordings-dataset</a><br> Mel spectrogram naming reflects the XC number used for cataloging on Xeno-canto in the format XC123456_2.png. The six numbers following the XC characters can be used to search for unique recordings on Xeno-canto (<a href="https://xeno-canto.org/">https://xeno-canto.org/</a>) using the search query “nr:123456” in the search tool or queried using the Xeno-canto API (<a href="https://xeno-canto.org/explore/api">https://xeno-canto.org/explore/api</a>). Unique recording names can be extracted from the mel spectrogram filenames.</p> </li> <li> <p>soundscape_test_wavs.zip: the wav-format sound recordings used to perform soundscape testing.</p> </li> </ul>
Dataset for "Estimating truncation effects of quantum bosonic systems using sampling algorithms"
<p>Markov Chain Monte Carlo simulation data for the preprint.</p> <p>T010ad***S10000M*_1.txt: simulation history for a_{dig} = 0.3, 0.5, 0.7, m^2 = 1, -1, B_max = 5000, used for Table 1 and Figure 1.</p> <p>T010R100L401S10000M1_1.txt: simulation history for a_{dig} = 0.5, m^2 = 1, B_max = 1, used for Figure 2.</p> <p>Table2.zip: contains simulation history for Table 2 and Figure 3. File name "T1a0.2S1250M1L4s2101.txt" indicates that the temperature is 1, a_{dig} = 0.2, Delta = 1250, m^2 = 1, lattice size is 4 * 4, and the random seed is 2101. Lines contain the expectation values of the potential energy and the two correlation functions obtained for successive steps. The largest estimated auto-correlation length d_q, which is used for the analysis, is as follows:</p> <table align="center"> <tbody> <tr> <td><em>a</em><sub>dig</sub></td> <td><em>d</em><sub>(0,0)</sub></td> <td><em>d</em><sub>(π,π)</sub></td> </tr> <tr> <td>0.2</td> <td>37</td> <td>4</td> </tr> <tr> <td>0.25</td> <td>38</td> <td>4</td> </tr> <tr> <td>0.3</td> <td>37</td> <td>4</td> </tr> <tr> <td>0.4</td> <td>41</td> <td>4</td> </tr> <tr> <td>0.5</td> <td>59</td> <td>5</td> </tr> <tr> <td>0.6</td> <td>130</td> <td>7</td> </tr> <tr> <td>0.7</td> <td>369</td> <td>15</td> </tr> <tr> <td>0.8</td> <td>968</td> <td>55</td> </tr> <tr> <td>0.9</td> <td>2174</td> <td>148</td> </tr> <tr> <td>1.0</td> <td>4491</td> <td>319</td> </tr> </tbody> </table> <p>The initial 10 d_q steps are discarded as a burn-in period, regardless of whether we conducted a warm-up run prior to the steps contained in this dataset.</p>
Data, scripts, and figures of the article: The effect of oregano essential oils on Feed Passage Syndrome in broilers: 2. Assessment under a challenge model
<p>This data set contains the data, JMP scripts, and figures of the article titled "The effect of oregano essential oil on Feed Passage Syndrome in broilers: 2. Assessment under a challenge model" to be published in the journal Animal - Open Space.</p>
Data, scripts, and figures of the article: The effect of oregano essential oils on Feed Passage Syndrome in broilers: 1. Assessment under field conditions
<p>This data set contains the data, JMP scripts, and figures of the article titled "The effect of oregano essential oils on Feed Passage Syndrome in broilers: 1. Assessment under field conditions" to be published in the journal Animal - Open Space.</p>
HyUSPRe Report & Data on 'New experimental data on reactions between H2 and well cement and effects on fluid flow and mechanical properties of well cement
<p>In this study, new experimental data is presented of the effects of H<sub>2</sub> exposure and cyclic loading on mechanical properties of oil well (class G) cement, relevant for underground hydrogen storage operations. Changes in mechanical properties (Young’s modulus, Poisson’s ratio and ultimate strength) have been analyzed using unconfined compressive strength (UCS) tests and confined cyclic loading tests on class G cement samples that were unreacted (cured for 3 days at 80°C) and exposed to lime-saturated brine and N<sub>2</sub> or H<sub>2</sub> for 1 and 2 months. Changes in cement mineralogy were analyzed by XRD analysis of the unreacted and exposed samples. The mechanical properties of elastic modulus and Poisson’s ratio are within the expected range of an oil well cement. Differences in Young’s modulus, Poisson’s ratio and ultimate strength are limited between unreacted, N<sub>2</sub>-exposed and H<sub>2</sub>-exposed samples, when comparing UCS tests or confined cyclic loading tests. Repeated UCS tests seem to indicate that the variation in Young’s modulus and ultimate strength increases after N<sub>2</sub> and H<sub>2</sub> exposure, but this observation needs to be confirmed in additional tests. During cyclic axial loading of confined cement samples, irreversible (plastic) deformation (compaction) occurs that affect static Young’s modulus. Also, effects of exceeding yield and failure strength on Young’s modulus are observed. Dynamic Young’s moduli and Poisson’s ratios derived from acoustic velocity measurements during confined cyclic tests show limited variation, in particular if static and dynamic Young’s modulus are compared. The mineralogical changes as identified using XRD analysis suggest minor changes between unexposed and H<sub>2</sub>- and N<sub>2</sub>-exposed samples, although XRD patterns indicate some minerals that could not be identified. The main conclusion is that effects of H<sub>2</sub> exposure and cyclic loading on mechanical properties and mineralogical changes of class G cement is limited compared to unreacted or N<sub>2</sub> exposed samples for the investigated conditions. There is no indication that changes in mechanical properties of cement are such that cement integrity of wells used for underground hydrogen storage will be significantly affected. It should be emphasized that this conclusion is based on experiments on one type of cement (class G) and a limited set of conditions. In particular, additional tests to assess the reproducibility of current results and tests on samples that were exposed longer to H<sub>2</sub> and N<sub>2</sub> are of interest. Detailed effects of changing properties for the durability and integrity of wells can be derived by performing a parameter sensitivity analysis with well integrity modelling for the range in mechanical properties measured in this study.</p>
Supporting data for "CoVEffect: Interactive System for Mining the Effects of SARS-CoV-2 Mutations and Variants Based on Deep Learning"
<p>This repository contains the datasets created and extracted for the paper:</p> <p>Giuseppe Serna García, Ruba Al Khalaf, Francesco Invernici, Stefano Ceri, and Anna Bernasconi. 2022.<br> "<strong>CoVEffect</strong>: Interactive System for Mining the <strong>Effects of SARS-CoV-2 Mutations and Variants</strong> Based on Deep Learning". (Available online at http://gmql.eu/coveffect)</p> <p>--------------------------------------------------------------------------------<br> LIST OF FILES WITH DESCRIPTION:<br> --------------------------------------------------------------------------------</p> <p>AdditionalFile1-effects-taxonomy:<br> Descriptions of legal values for the 'Effect' field, based on a categorized taxonomy.</p> <p>AdditionalFile2-levels-taxonomy:<br> Descriptions of legal values for the 'Level' field.</p> <p>AdditionalFile3-training_dataset_target:<br> List of target tuples (manually annotated) of 221 abstracts considered for training the model. For each abstract, target tuples follow the schema ID, DOI, title, entity, effect, level, type (mutation or variant), tuples_count (>1 when an effect/level is shared by multiple entities, #abstracts containing the same effect described in the tuple).</p> <p>AdditionalFile4-validation_dataset_target:<br> List of target tuples (manually annotated) of 50 abstracts considered for validating the prepared prediction model.<br> For each abstract, target tuples follow the schema defined for AdditionalFile3.</p> <p>AdditionalFile5-validation_dataset_highlighted:<br> Textual abstracts of the 50 manuscripts considered for validation; the text used to support the manual target annotations has been highlighted in yellow.</p> <p>AdditionalFile6-validation_dataset_prediction:<br> List of predicted annotations of 50 abstracts considered for validating the prepared prediction model. The file is split in 4 TSV, respectively for entity (a), effect (b), level (c), and whole tuple predictions (d).</p> <p>AdditionalFile7-keywords_query_list:<br> Keyword-based search run on the CORD-19 dataset to extract a relevant subset of abstracts regarding the scope of interest of CoVEffect. The Boolean logic used to combine keywords is explained in the section 'Annotations of the biology-related CORD-19 cluster'.</p> <p>AdditionalFile8-CORD-19_batch_dataset_metadata:<br> Metadata of the 7,230 papers extracted by the keyword-based query in AdditionalFile7.<br> These abstracts have been annotated by the prediction framework.</p> <p>AdditionalFile9-CORD-19_batch_dataset_prediction:<br> List of predicted annotations of 7,230 abstracts extracted from the biology-related cluster of CORD-19.</p> <p>AdditionalFile10-test_dataset_target:<br> List of target tuples (manually annotated) of 100 abstracts randomly selected from the 7,230 extracted as in AdditionalFile8.<br> For each abstract, target tuples follow the schema defined for AdditionalFile3.</p> <p>AdditionalFile11-test_dataset_prediction:<br> List of predicted annotations of 100 abstracts considered for testing the prediction model on a subset of the CORD-19 biology-related cluster. As AdditionalFile6, it is split in 4 TSV, respectively for entity (a), effect (b), level (c), and whole tuple predictions (d).</p>
Fast Method for Calibrated Self-Discharge Measurement of Lithium-Ion Batteries including Temperature Effects and Comparison to Modelling
<p>Self-discharge data related to the manuscript entitled: 'Fast Method for Calibrated Self-Discharge Measurement of Lithium-Ion Batteries including Temperature Effects and Comparison to Modelling', submitted to Energy Reports on 26 April 2023.</p>
data for journal article 'Nernst-Ettingshausen effect in thin Pt and W films at low temperatures'
<p>This dataset contains the supporting information for the journal article 'Nernst-Ettingshausen effect in thin Pt and W films at low temperatures'.</p>
Data underlying the publication: "Effects of hatching system on chick quality, welfare and health of young breeder flock offspring"
<p>The aim of the current study was to evaluate effects of two alternative hatching systems (hatchery-feeding and on-farm hatching)<br> compared to conventional hatching systems with respect to chick quality, welfare and health of a young breeder flock.<br> To study the effect of treatments on the competence of the humoral immune response, blood titres after a live attenuated NCD<br> vaccination was assessed.<br> To study differences in disease resilience, the susceptibility to develop tracheal inflammation after infection with a<br> life attenuated infectious bronchitis vaccine virus was assessed by trachea lesion scoring and expression of genes related<br> to epithelial integrity and inflammatory responses.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.