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Figure 9 in New genera and species of Urothoidae (Amphipoda) from the Brazilian deep sea, with the re-assignment of Pseudurothoe and Urothopsis to Phoxocephalopsidae

Figure 9. Coronaurothoe rotunda gen. et sp. nov., sex unknown, 3.0 mm, 21°52′59″ S, 39°55′32″ W, 750 m depth, MNRJ 21443. Scale bars: 0.5 mm.

opencc-by-4.0Aug 2014View details →

Figure 8 in New genera and species of Urothoidae (Amphipoda) from the Brazilian deep sea, with the re-assignment of Pseudurothoe and Urothopsis to Phoxocephalopsidae

Figure 8. Coronaurothoe rotunda gen. et sp. nov., sex unknown, 3.0 mm, 21°52′59″ S, 39°55′32″ W, 750 m depth, MNRJ 21443. Scale bars: 0.1 mm for U1; 0.2 mm for U2°3; 0.5 mm for all others.

Figs 28-30 in The Genus Daspletis Loew, 1858 And The Description Of Two New Genera, Anasillomos And Remotomyia (Diptera: Asilidae: Stenopogoninae)

Figs 28-30. Dioctobroma flavoterminatum Hull, holotype male genitalia. 28. Lateral. 29. Ventral. 30. Dorsal.

Figs 40-42. Remotomyia brunales spec. nov. paratype male genitalia. 40. Lateral. 41. Ventral. 42 in The Genus Daspletis Loew, 1858 And The Description Of Two New Genera, Anasillomos And Remotomyia (Diptera: Asilidae: Stenopogoninae)

Figs 40-42. Remotomyia brunales spec. nov. paratype male genitalia. 40. Lateral. 41. Ventral. 42. Dorsal.

Figs 19- 21 in The Genus Daspletis Loew, 1858 And The Description Of Two New Genera, Anasillomos And Remotomyia (Diptera: Asilidae: Stenopogoninae)

Figs 19- 21. Daspletis setithoracicus (Ricardo) lectotype male genitalia. 19. Lateral. 20. Ventral. 2 1. Dorsal.

Figs 6-10 in The Genus Daspletis Loew, 1858 And The Description Of Two New Genera, Anasillomos And Remotomyia (Diptera: Asilidae: Stenopogoninae)

Figs 6-10. Daspletis hermanni (Ricardo). 6- 7. Hopetown male. 6. Antenna, lateral aspect. 7. Head. 8-10. Lectotype male genitalia. 8. Lateral. 9. Ventral. 10. Dorsal.

Figs 1-5. Anasillomos chrysopos spec. nov. paratype male. 1. Antenna, lateral aspect. 2 in The Genus Daspletis Loew, 1858 And The Description Of Two New Genera, Anasillomos And Remotomyia (Diptera: Asilidae: Stenopogoninae)

Figs 1-5. Anasillomos chrysopos spec. nov. paratype male. 1. Antenna, lateral aspect. 2. Head and part of thorax. 3- 5. Genitalia. 3. Lateral. 4. Ventral. 5. Dorsal.

Figs 22-24. Daspletis stenoura spec. nov. paratype male genitalia. 22. Lateral. 23. Ventral. 2 4 in The Genus Daspletis Loew, 1858 And The Description Of Two New Genera, Anasillomos And Remotomyia (Diptera: Asilidae: Stenopogoninae)

Figs 22-24. Daspletis stenoura spec. nov. paratype male genitalia. 22. Lateral. 23. Ventral. 2 4. Dorsal.

Figs 11 15. Daspletis hirtus Ricardo. 11-12. Kalahari Gemsbok Park male. 11. Head. 12. Antenna, lateral aspect. 13- 15. Sawmills topotype male genitalia. 13. Lateral. 14. Ventral. x4 in The Genus Daspletis Loew, 1858 And The Description Of Two New Genera, Anasillomos And Remotomyia (Diptera: Asilidae: Stenopogoninae)

Figs 11 15. Daspletis hirtus Ricardo. 11-12. Kalahari Gemsbok Park male. 11. Head. 12. Antenna, lateral aspect. 13- 15. Sawmills topotype male genitalia. 13. Lateral. 14. Ventral. x4. Dorsal.

Figs 16- 18 in The Genus Daspletis Loew, 1858 And The Description Of Two New Genera, Anasillomos And Remotomyia (Diptera: Asilidae: Stenopogoninae)

Figs 16- 18. Daspletis: placodes: spec. nov. paratype male genitalia. 16. Lateral. 17. Ventral. 18. Dorsal.

opencc-by-4.0Sep 2020View details →

Phylogenomic analyses of 142 prokaryotic genera

This repository contains 142 tar archive files, each corresponding to a prokaryotic genus. Each archive contains the following files/directories: <ul> <li><code>accn.tax.tsv         </code>   a tab-delimited file containing the assembly accession (col 1) and an associated taxon name (col 2) for each selected genome (one per line)</li> <li><code>gff/                 </code>   a directory containing a gzip-compressed <a href="https://m.ensembl.org/info/website/upload/gff3.html">GFF3</a> file (as returned by the annotation tool <a href="https://github.com/tseemann/prokka">Prokka</a>) for each genome specified in <code>accn.tax.tsv</code></li> <li><code>cds.fna.gz           </code>   a gzip-compressed FASTA file containing all the coding sequences (at the codon level) from the GFF3 files in the directory <code>gff/</code></li> <li><code>msa/                 </code>   a directory containing multiple amino acid and codon sequence alignments (compressed FASTA files with extensions .afa.gz and .afc.gz, respectively) for each cluster of at least four homologous sequences (as determined by the pipeline <a href="https://github.com/sanger-pathogens/Roary">Roary</a> from the GFF3 files in <code>gff/</code>)</li> <li><code>supermatrix.fasta.gz </code>   a gzip-compressed FASTA file obtained by concatenating all the multiple codon sequence alignments in the directory <code>msa/</code></li> <li><code>tree.nwk             </code>   a <a href="https://evolution.genetics.washington.edu/phylip/newicktree.html">Newick</a>-formatted file containing a maximum-likelihood (ML) phylogenetic tree inferred from the file <code>supermatrix.fasta.gz</code> using <a href="http://www.iqtree.org/">IQ-TREE</a></li> <li><code>iqtree.txt           </code>   a txt file summarizing the ML estimates of the GTR+Γ evolutionary model parameters, as returned by IQ-TREE when inferring the phylogenetic tree <code>tree.nwk</code></li> </ul>   A summary of the 142 phylogenomic analyses can be found in the tab-delimited file <a href="https://zenodo.org/record/4034261/files/GTR.params.trees.tsv?download=1"><code>GTR.params.tree.tsv</code></a>. Each line corresponds to one genus and contains the 12 following fields:   <code>[1]   </code>   genus name,   <code>[2-5] </code>   frequencies of T, C, A, G, respectively,   <code>[6-10]</code>  C-T, A-T, G-T, A-C, C-G rate parameters, respectively (normalized such that A-G rate = 1),   <code>[11]  </code>   Γ shape parameter alpha,   <code>[12]  </code>   Newick-formatted phylogenetic tree. _____ Criscuolo A (2020) On the transformation of MinHash-based uncorrected distances into proper evolutionary distances for phylogenetic inference. F1000Research, 9:1309. <a href="https://doi.org/10.12688/f1000research.26930.1">doi:10.12688/f1000research.26930.1</a>

Fig. 601 in Nearctic Anthomyzidae: a monograph of Anthomyza and allied genera (Diptera)

Fig. 601. Cladogram presenting the hypothesis of relationships among genera of the Anthomyza clade. Numbers below and/or above branches refer to apomorphic states of characters, those with 1, 2 or 3 in parentheses to states of transformation series, numbers above branches in italics denote homoplasious characters, and those with (-) reversals of characters; dashed line indicates questionable relationship. The outgroup is denned as a hypothetical taxon accumulating plesiomorphic characters used in the analysis. For characters mentioned in the cladogram see Appendix (p. 384).

Figs 589–596 in Nearctic Anthomyzidae: a monograph of Anthomyza and allied genera (Diptera)

Figs 589–596. Anthomyza equiseti sp. nov., paratype female (Canada: Ontario). 589 – postabdomen, laterally; 590 – the same, dorsally; 591 – the same, ventrally; 592 – female genital chamber and S8, laterally (pleural micropubescence omitted); 593 – spermatheca; 594 – apex of ventral receptacle, ventrally; 595 – spermatheca; 596 – internal sclerites, ventrally. Scales = 0.2 mm (Figs 589–591), 0.05 mm (Figs 593–595) and 0.1 mm (others).

Fig. 598 in Nearctic Anthomyzidae: a monograph of Anthomyza and allied genera (Diptera)

Fig. 598. Map of North America showing distributions of two members of Cluster 2: Anthomyza gilviventris sp. nov. and A. pullinotum sp. nov. The square symbols for A. pullinotum are enlarged to improve visibility at common localities. See "Distributional patterns" for explanation of Clusters.

Figs 574–579 in Nearctic Anthomyzidae: a monograph of Anthomyza and allied genera (Diptera)

Figs 574–579. Anthomyza equiseti sp. nov, its habitat and microhabitat of immatures. 574 – male on Equisetum ssuviatile, laterally, body length ca. 2.5 mm (Canada: Ontario: Pancake Bay); 575 – the same, dorsally; 576 – the same, dorsolaterally; 577 – large growth of emergent Equisetum ssuviatile, host plant of A. equiseti (Canada: Ontario: Echo Bay); 578 – part of Equisetum stem, with larva; 579 – the same, with puparium. Photo by J. Roháček (Figs 574–576) and K. N. Barber (Figs 577–579).

Figs 580–588 in Nearctic Anthomyzidae: a monograph of Anthomyza and allied genera (Diptera)

Figs 580–588. Anthomyza equiseti sp. nov., paratype male (Canada: Ontario). 580 – external genitalia, caudally; 581 – the same, laterally; 582 – hypandrial complex, laterally; 583 – transandrium, caudally; 584 – caudal process of transandrium, ventrally; 585 – aedeagal complex, laterally; 586 – apex of nlum, subventrally; 587 – armature of right wall of aedeagal part of folding apparatus; 588 – gonostylus, ventrolaterocaudally (widest extension). Scales = 0.05 mm (Figs 586, 588) and 0.1 mm (others).

Figs 551–559 in Nearctic Anthomyzidae: a monograph of Anthomyza and allied genera (Diptera)

Figs 551–559. Anthomyza vulgaris sp. nov., paratype male (Canada: Ontario). 551 – external genitalia, caudally; 552 – the same, laterally; 553 – hypandrial complex, laterally; 554 – transandrium, caudally; 555 – caudal process of transandrium, ventrally; 556 – aedeagal complex, laterally; 557 – apex of nlum, subventrally; 558 – armature of right wall of aedeagal part of folding apparatus; 559 – gonostylus, ventrolaterocaudally (widest extension). Scales = 0.05 mm (Figs 557, 559) and 0.1 mm (others).

Figs 518–523 in Nearctic Anthomyzidae: a monograph of Anthomyza and allied genera (Diptera)

Figs 518–523. Primary types of the Nearctic species of the Anthomyza gracilis group. 518 – A. furvifrons sp. nov., holotype male, laterally, body length 2.30 mm; 519 – same specimen, head dorsally; 520 – A. vulgaris sp. nov., holotype male, laterally, body length 2.50 mm; 521 – same specimen, head dorsally; 522 – A. equiseti sp. nov., holotype male, laterally, body length 2.35 mm; 523 – same specimen, head dorsally. Photo by J. Roháček.

Figs 474–480 in Nearctic Anthomyzidae: a monograph of Anthomyza and allied genera (Diptera)

Figs 474–480. Anthomyza shewelli sp. nov., paratype female, typical form (Canada: Ontario). 474 – postabdomen, dorsally; 475 – the same, ventrally; 476 – distal part of female genital chamber, laterally; 477 – end of postabdomen with internal sclerites, laterally; 478 – internal sclerites and S8, ventrally (micropubescence omitted); 479 – spermathecae; 480 – spermatheca of another specimen. Scales = 0.2 mm (Figs 474, 475), 0.1 mm (Figs 476–478) and 0.05 mm (Figs 479, 480).

Figs 422–429 in Nearctic Anthomyzidae: a monograph of Anthomyza and allied genera (Diptera)

Figs 422–429. Anthomyza gibbiger sp. nov., paratype male (Canada: Ontario). 422 – external genitalia, caudally; 423 – transandrium, dorsally; 424 – external genitalia, laterally; 425 – hypandrial complex, laterally; 426 – transandrium, caudally; 427 – aedeagal complex, laterally; 428 – apex of nlum, subventrally; 429 – gonostylus, laterocaudally (widest extension). Scales = 0.05 mm (Fig. 428) and 0.1 mm (others).