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564 results for “June”
June Lake Tephra Dataset
<p>This dataset describes a sequence of tephra layers recovered from a Holocene sediment core taken at June Lake, California, USA. It includes tephra sediment stratigraphy, sample information, tephra layer thicknesses, tephra grain size data, volcanic glass geochemistry, Fe-Ti oxide geochemistry, SEM imagery, and method information. The tephra layers originate from the Mono-Inyo volcanic system.</p> <p>Most of this information is contained in a series of spreadsheets that follow <a href="https://zenodo.org/record/4075613#.X5mcdi9h1aU">tephra community recommended best practices</a>. </p> <p>The listed files below follow the naming convention and format of Abbott et al. (2020) version 2.0, and they serve as worked examples of that format. See DOI: <a href="https://doi.org/10.5281/zenodo.3866266">10.5281/zenodo.3866266</a> for more information.</p> <ul> <li>June Lake Collection2b.xlsx (location information, sample information, stratigraphy)</li> <li>June Lake Sample_Processing.xlsx (sample preparation)</li> <li>June Lake Physical_analysis2b.xlsx (maximum grain size data, pumice class density)</li> <li>June Lake Physical_Microanalysis2.xlsx (SEM-EDS images, sample mount images)</li> <li>June Lake Geochemical_Analysis2.xlsx (EPMA method details)</li> </ul> <p>Glass and Fe-Ti oxide geochemistry by EPMA may be found in the following files:</p> <ul> <li>June Lake Glass DATA.xlsx</li> <li>June Lake Fe-Ti Oxides DATA.xlsx</li> </ul> <p>SEM and other images may be found in the following file:</p> <ul> <li>June Lake EPMA Images.zip</li> </ul>
Data set for the manuscript "The Atmospheric Drivers of the Major Saharan Dust Storm in June 2020"
<p>This publication is under consideration at geophysical research letters.</p>
River Erpe (Berlin, Germany) groundwater levels, temperature and 222-radon data set, June 2019
<p>Time series of groundwater levels and temperature, chloride concentrations as well as 222-radon activities in piezometers P0 to P9 and P11 located close to Heidemühle at the River Erpe, Berlin, Germany, collected between June and November 2019. In "Rn_eql_incubations.csv", "mea" denotes the mean activity and "sdd" the associated standard deviation.</p>
Data from: "White-tailed deer (Odocoileus virginianus) transcriptome assembly and SNP discovery" in Genomic Resources Notes accepted 1 June 2013-31 July 2013
White-tailed deer (Odocoileus virginianus) are among the most abundant and widespread large mammals in the Americas, comprising up to 38 subspecies ranging from Northern Canada to Peru. Although believed to have high genetic diversity, surprisingly few genomic resources are currently available, despite the species' ecological and economic importance. White-tailed deer and other cervids throughout central North America are currently being afflicted by chronic wasting disease (CWD), one of the degenerative prion diseases collectively known as transmissible spongiform encephalopathies. Although CWD is of major importance to white-tailed deer management, little is currently known about innate resistance or susceptibility to CWD outside of polymorphisms in the prion protein gene, Prnp, though a recent study using microsatellites suggests that the disease may have additional underlying genetic components. Further association analysis is hindered by low marker density. In this study, we used high-throughput SOLiD sequencing to create novel sequence data for white-tailed deer and identify single-nucleotide polymorphisms, using the pooled blood transcriptomes of six individuals. In total, we generated 14,010 contigs of length ≥ 200 nt, representing 4,104,760 nt of unique sequence data, and we identified 66,596 SNPs. This data represents one of the largest genetic resources currently available for any cervid. We hope it will facilitate future research for population genomics and assist with the identification of genetic factors that underlie disease resistance and other traits relevant for conservation and management.
Data from: "De novo assembled transcriptome of organs involved in reproduction in an endangered endemic Iberian cyprinid fish (Squalius pyrenaicus)" in Genomic Resources Notes Accepted 1 June 2015 to 31 July 2015
Sex determination systems are diverse, especially among fish, and include genetic and/or environmental components. Unexpectedly for such a basic aspect of development, sex determination systems change rapidly during evolution and gonadal fate is not ultimate, being actively maintained lifelong. Here, sequences of expressed genes involved in maintenance of gonad identity and reproduction processes were obtained through transcriptome assembly of the brain-gonadal axis tissues of a freshwater fish inhabiting highly variable environments, the gonochoristic Iberian fish Squalius pyrenaicus. Through Illumina total RNA-sequencing, male and female transcriptomes of brain and gonad tissues were assembled with Trans-ABySS software and merged to produce a more comprehensive S. pyrenaicus transcriptome. Coding sequences (CDS) predicted by TransDecoder were annotated using blastx. By means of read mapping against the reference transcriptome and CDS datasets, using Bowtie2, the accuracy of read mapping was assessed. This first endemic Iberian cyprinid transcriptome of organs involved in reproduction processes may serve as a valuable genomic resource for studying sexual mechanisms and other aspects of evolution, such as speciation and responses to environmental changes, and may be a useful tool for conservation studies since S. pyrenaicus is an endangered species.
Kingsbarns June 2021
<p>PASS sample recorded in Kingsbarns, Scotland on June 21st 2021</p>
Apiti Cemetery - 16 June 2020
Apiti Cemetery, Apiti, Manawatu, New Zealand Source: Objaverse 1.0 / Sketchfab
FIGURE 8. A in Pontoniine shrimps from the 2003 NORFANZ Expedition, 10 May – 16 June (Crustacea: Decapoda: Palaemonidae)
FIGURE 8. A, Apopontonia disparostris Bruce, NORFANZ stn. 20. B, Hamiger novaezealandiae Borradaile, NORFANZ stn. 133, male. C, Periclimenes fenneri sp. nov., holotype, NOR FANZ stn. 154. D, Periclimenes tangeroa sp. nov., holotype, NORFANZ stn. 006. Scale bars in millemeters.
FIGURE 7 in Pontoniine shrimps from the 2003 NORFANZ Expedition, 10 May – 16 June (Crustacea: Decapoda: Palaemonidae)
FIGURE 7. Periclimenes tangeroa sp. nov., ovigerous female holotype. A, third pereiopod dactyl, distal corpus and unguis. Third pereiopod dactyls, not to scale, adjusted to same basal depth. B, Periclimenes tangeroa sp. nov. C, Periclimenes alcocki Kemp (redrawn from Bruce, 1996). A, scale bar 0.2mm.
FIGURE 4 in Pontoniine shrimps from the 2003 NORFANZ Expedition, 10 May – 16 June (Crustacea: Decapoda: Palaemonidae)
FIGURE 4. Periclimenes fenneri sp. nov., female holotype,. A, Mandible, molar process. B, same, incisor process. C, maxillula, palp. D, third maxilliped, endopod, distolateral angle of merus. E, same, tip of terminal segment, setae omitted. F, third pereiopod, distal propod and dactyl, propodal spines black. G, same, distal corpus and unguis. H, third abdominal tergite, posterior marginal denticulations. I, telson, posterior marginal spines, dorsal spine inset above. J, uropod, distolateral angle of exopod.
FIGURE 2 in Pontoniine shrimps from the 2003 NORFANZ Expedition, 10 May – 16 June (Crustacea: Decapoda: Palaemonidae)
FIGURE 2. Periclimenes fenneri sp. nov., female holotype. A, carapace, eye and antennae. B, rostrum. C, antennule. D, antenna. E, scaphocerite. F, eye. G, first pereiopod. H, same, chela. I, third pereiopod. J, same, propod and dactyl. K, posterior abdominal segments. L, telson. M, uropod.
FIGURE 5 in Pontoniine shrimps from the 2003 NORFANZ Expedition, 10 May – 16 June (Crustacea: Decapoda: Palaemonidae)
FIGURE 5. Periclimenes tangeroa sp. nov., ovigerous female holotype. A, carapace and antennae, dorsal. B, anterior carapace and left antennae, dorsal. C, rostrum. D, antennular peduncle. E, antenna. F, posterior abdominal segments, lateral. G, telson. H, same, posterior spines. I, uropod.
FIGURE 3 in Pontoniine shrimps from the 2003 NORFANZ Expedition, 10 May – 16 June (Crustacea: Decapoda: Palaemonidae)
FIGURE 3. Periclimenes fenneri sp. nov., female holotype, mouthparts from right side. A, mandible. B, maxillula. C, maxilla. D, first maxilliped. E, second maxilliped. F, third maxilliped.
Atmospheric Surface Flux Station #50 measurements (level 2 Processed), Study of Precipitation, the Lower Atmosphere and Surface for Hydrometeorology (SPLASH), October 2021-June 2023
<p>Processed (Level 2) measurements and derived variables from the Atmospheric Surface Flux Station #50 (ASFS-50) deployed at the Avery Picnic site (38°58.3455' N, 106°59.8113' W) during the Study of Precipitation, the Lower Atmosphere, and Surface for Hydrometeorology (SPLASH) campaign near Gothic, Colorado, from October 2021 through June 2023. The ASFS measured variables of the surface energy budget, momentum flux, near-surface meteorology, and soil properties. Measurements of high-resolution 3-dimensional winds were observed at a nominal height of 4.6 m (depending on snow depth). Measurements of upwelling broadband radiation and meteorology observed from a nominal height of 2.9 m. The measurements are included in three netCDF files per day. The "sledmet" files are comprised of 1-min averages of measured and derived variables, including near-surface meteorology, surface skin temperature, snow depth, radiative fluxes, and conductive fluxes. The "sledseb" files are 10-min averages of the same variables as in the 1-min files and also include calculations of turbulent sensible and latent heat fluxes, momentum flux, and associated diagnostics, surface stress, and Monin-Obukhov parameters using both eddy covariance and bulk methodologies, all valid for the 10-min intervals. Both of these file types also contain a "_qc" variable paired with each measurement variable, or family of variables, that is a temporally-matched quality control code: 0 = good data, 1 = caution (data may be suspect), 2 = bad data, and -1 = missing (no data was collected). The "10hz" files include 3-dimensional winds and gas densities of water vapor and carbon dioxide that are quality-controlled, aggregated to a regular 10-Hz temporal grid, and (for winds) rotated into the earth coordinate frame. A detailed documentation of the measurement conditions, the processing steps taken to construct this data set, and other caveats and uncertainties will be provided in an accompanying published data manuscript.</p> <p>Note on update: v2_1 update provides double rotation ("dbl") turbulent fluxes in addition to planar fit ("pf"), as well as corrects a rotation problem with the v2 data that primarily affects the momentum fluxes. v2_1 only includes updates for the sledseb file set: for sledmet and sledwind10hz, continue to refer to v2 data set.</p>
Fig. 2. Climogram showing average month temperature and rainfall from June 1996 in Aquatic Coleoptera In The Subtropical-Pampasic Ecotone (Argentina, Buenos Aires): Species Composition And Temporal Changes
Fig. 2. Climogram showing average month temperature and rainfall from June 1996 to July 1998 (Data from Estación Meteorológica La Plata, Facultad de Ciencias Astronómicas y Geofísicas, Universidad Nacional de La Plata).
Continuous snow temperature profiles from the Snow Ice Mass Balance Apparatus (SIMBA) (level 1 Raw), Study of Precipitation, the Lower Atmosphere and Surface for Hydrometeorology (SPLASH), November 2022-June 2023
<p>Raw (Level 1) measurements from the Snow Ice Mass Balance Apparatus (SIMBA) deployed at the Avery Picnic site (~ 38°58.345' N, 106°59.811' W) during the Study of Precipitation, the Lower Atmosphere, and Surface for Hydrometeorology (SPLASH) campaign near Gothic, Colorado, from November 2021 through June 2023. The SIMBA, originally designed for observing the mass balance of sea ice, is comprised of a thermistor chain with 2 cm spacing (Jackson et al., 2013). This system was configured for terrestrial snowpack by the manufacturer, SAMS Enterprise, to the specifications for SPLASH. The chain was installed suspended from a tripod and fixed to a rigid plastic bar near in time to the onset of snowpack in November 2022. The lowest 10 cm of the chain were buried within the soil. The top of the chain reached approximately 180 cm above the soil surface and snow was permitted to accumulate around the chain throughout the winter of 2022-2023. In the files, negative values of the "height" vector are below the soil surface and positive levels are above, which may be either snow or air depending on the snow depth. The system also uses a low-power heating cycle to measure thermistor's temperature response time for aiding in determining material interfaces: see Jackson et al. (2013) for details. </p><p>There are several cautions to be aware of when using these data. The data has been ingested into daily netCDF and metadata (in attributes) have been provided but no quality control has been carried out on this raw version of the data set. From 1 November through 22 December 2022, the sensor obtained profiles every 10 min after which corruption of the configuration file reverted the profiles to every 6 hours (0, 6, 12, and 18 UTC). After 1 January a problem in the firmware caused the system to lose connection to the time-synching GPS network and therefore the clock drifted from January through June 2023 (the maximum potential time stamping error is likely < 81 sec). Finally, from 23 March through 4 April 2023, the depth of the snow at the location of the sensor was deeper than 180 cm and thus measurements in the upper part of the snowpack were not observed then.</p><p>Jackson, K., J. Wilkinson, T. Maksym, D. Meldrum, J. Beckers, C. Haas, and D. Mackenzie (2013) A novel and low-cost sea ice mass balance buoy. Journal of Atmosphere and Oceanic Technology, 30(11), 2676-2688, https://doi.org/10.1175/JTECH-D-13-00058.1.</p>
Atmospheric Surface Flux Station #50 measurements (level 1 Raw), Study of Precipitation, the Lower Atmosphere and Surface for Hydrometeorology (SPLASH), October 2021-June 2023
<p>Raw (Level 1) measurements from the Atmospheric Surface Flux Station #50 (ASFS-50) deployed at the Avery Picnic site (38°58.3455' N, 106°59.8113' W) during the Study of Precipitation, the Lower Atmosphere, and Surface for Hydrometeorology (SPLASH) campaign near Gothic, Colorado, from October 2021 through June 2023. The ASFS measured variables comprising the surface energy budget, surface momentum flux, near-surface meteorology, and soil properties. These measurements are included in three netCDF files per day. The "slow" files are for 1-minute averages of the measured variables, including near-surface meteorology, surface height change (due to accumulating/ablating snow), and upwelling and downwelling shortwave and longwave radiative fluxes. The "fast" files are for data at 20 Hz resolution including 3-dimensional wind, temperature, and gas concentrations of water vapor and carbon dioxide. These data are raw measurements with technical corrections applied but no quality assurance. A detailed documentation of the measurement will be provided in a forthcoming publication. For scientific purposes, we recommend using the Level 2 data files when they are available, as these will include full quality control as well as higher-order derived products.</p>
GNSS derived Total Electron Content variation of the Ionosphere along the annularity path during the Annular Solar Eclipse of 21 June 2020
<p>GNSS data set used in the <strong><span>GNSS derived Total Electron Content variation of the Ionosphere along the annularity path during the Annular Solar Eclipse of 21 June 2020 </span></strong><span>research article</span></p>
Subspecies and Distribution. S. J. fuscicollis Spix, 1823 — W Brazil (states of Acre & Amazonas) and Peru, S of the Rio Solimoes, between the Rio Javari in the W, E through the Rio Jutai Basin to the Rio Jurua (left bank), also in Peru, W of the Rio Yavari as far as the Rio Tapiche, an E tributary of the Rio Ucayali, and extending N from there as far as the Rio Blanco (left bank), where it meets the distribution of Geoffroy's Saddle-back Tamarin, S. nigrifrons (right bank of the Rio Blanco). S. f. auvilapiresi Hershkovitz, 1966 — W Brazil in the Amazonas State (type locality is the mouth of the Lago de Tefé, Rio Solimoes), found along the S of the Rio Solimoes between the rios Jurua and Purus, including the basins of the rios Urucu and Coari, and probably the Rio Tefé; the S limits are not known but possibly in the region of the N bank of the Rio Tapaua, an affluent of the Rio Purus. S. f. eruzlimai Hershkovitz, 1966 — W Brazil, described by Hershkovitz without provenance (based on a single individual "said to be from the upper Rio Purus"); M. G. M. van Roosmalen reported in 2003 that it had been observed by T. van Roosmalen on 21 June 2002, on the W bank of the Rio Purus, opposite the mouth of the Rio Sepatini, and noted that Hershkovitz was correct in supposing that it occurred between the rios Pauini and Tapaua, W of the Rio Purus. S. J. mura Rohe et al, 2009 — C Brazil (Amazonas State), interfluvium of the rios Madeira and Purus, S of the Rio Amazonas, probably S to the Rio Igapo-Acu. S. f. primitivus Hershkovitz, 1977 — W Brazil (Amazonas State), the distribution is believed to extend from the left bank of the Rio Pauini, along the left bank of the upper Rio Purus, N to the Rio Tapaua (right bank), as far W the right bank of the Rio Jurua, and the Rio Tarauaca. in Callitrichiade
Subspecies and Distribution. S. J. fuscicollis Spix, 1823 — W Brazil (states of Acre & Amazonas) and Peru, S of the Rio Solimoes, between the Rio Javari in the W, E through the Rio Jutai Basin to the Rio Jurua (left bank), also in Peru, W of the Rio Yavari as far as the Rio Tapiche, an E tributary of the Rio Ucayali, and extending N from there as far as the Rio Blanco (left bank), where it meets the distribution of Geoffroy's Saddle-back Tamarin, S. nigrifrons (right bank of the Rio Blanco). S. f. auvilapiresi Hershkovitz, 1966 — W Brazil in the Amazonas State (type locality is the mouth of the Lago de Tefé, Rio Solimoes), found along the S of the Rio Solimoes between the rios Jurua and Purus, including the basins of the rios Urucu and Coari, and probably the Rio Tefé; the S limits are not known but possibly in the region of the N bank of the Rio Tapaua, an affluent of the Rio Purus. S. f. eruzlimai Hershkovitz, 1966 — W Brazil, described by Hershkovitz without provenance (based on a single individual "said to be from the upper Rio Purus"); M. G. M. van Roosmalen reported in 2003 that it had been observed by T. van Roosmalen on 21 June 2002, on the W bank of the Rio Purus, opposite the mouth of the Rio Sepatini, and noted that Hershkovitz was correct in supposing that it occurred between the rios Pauini and Tapaua, W of the Rio Purus. S. J. mura Rohe et al, 2009 — C Brazil (Amazonas State), interfluvium of the rios Madeira and Purus, S of the Rio Amazonas, probably S to the Rio Igapo-Acu. S. f. primitivus Hershkovitz, 1977 — W Brazil (Amazonas State), the distribution is believed to extend from the left bank of the Rio Pauini, along the left bank of the upper Rio Purus, N to the Rio Tapaua (right bank), as far W the right bank of the Rio Jurua, and the Rio Tarauaca.
Continous observations of chlorophyll fluorescence and photosynthesis at XTS site (October 2020- June 2021)
<p>This is the dataset of continuous observations of chlorophyll fluorescence and photosynthesis at the Xiaotangshan (XTS, Beijing) site. The dominant species during the observation period was winter wheat, and the data was provided at an interval of half an hour.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.