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440
datasets available to search
ShareScore release 0.9.0
Dataset results
440 results for “Potato”
Identification and characterization of potato anthocyanin synthesis and regulatory miRNA based on comparative transcriptome [miRNA-seq]
GEO Series GSE189081. Solanum tuberosum. 12 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Next-generation sequencing facilitates quantitative analysis of microRNAs under TOR inhibitors treatment in potato
GEO Series GSE155877. Solanum tuberosum. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Transcriptomics combined with physiology and Metabolomics revealed the responses of potato tuber formation to nitrogen
GEO Series GSE271112. Solanum tuberosum. 9 samples. Type: Expression profiling by high throughput sequencing.
Verticillium dahliae disease resistance and the regulatory pathway for maturity and tuberization in potato
GEO Series GSE107936. Solanum tuberosum. 289 samples. Type: Expression profiling by high throughput sequencing.
Identification and characterization of potato long noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection [Time-course RNAseq]
GEO Series GSE74870. Solanum tuberosum. 30 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Expression profiling of Solanum chacoense diploid potato lines to identify candidate Colorado potato beetle (Leptinotarsa decemlineata) resistance genes
GEO Series GSE138184. Solanum chacoense. 24 samples. Type: Expression profiling by high throughput sequencing.
Dynamic network biomarker analysis discovers IbNAC083 in initiation and regulation of sweet potato root tuberization
GEO Series GSE172378. Ipomoea batatas. 28 samples. Type: Expression profiling by high throughput sequencing.
Exploring the role of potato Pti5 in hypersensitive response-conferred resistance to Potato virus Y using short hairpin RNA-mediated gene silencing
GEO Series GSE136877. Solanum tuberosum. 12 samples. Type: Expression profiling by high throughput sequencing.
Potato Gene Expression Associated with the RB-mediated Broad-Spectrum late blight resistance
GEO Series GSE13341. Solanum tuberosum. 48 samples. Type: Expression profiling by array.
Analysis of global gene expression signatures in sweet potato as affected by temperature stress
GEO Series GSE51862. Ipomoea carnea; Ipomoea batatas. 7 samples. Type: Expression profiling by array.
Expression profiling of Solanum chacoense in response to Colorado potato beetle herbivory
GEO Series GSE169331. Solanum chacoense. 24 samples. Type: Expression profiling by high throughput sequencing.
The function of the GIGANTEA gene StGI.04 in potato: Uncovering a new function affecting the anthocyanin content of tuber skin
GEO Series GSE189956. Solanum tuberosum. 6 samples. Type: Expression profiling by high throughput sequencing.
Ameliorative effect of the oil components derived from sweet potato shochu on impaired short-term memory in mice after amyloid ß25-35 injection
GEO Series GSE208013. Mus; Mus musculus. 3 samples. Type: Expression profiling by array.
RNA-Seq of potato tubers after cut-wounding
GEO Series GSE178602. Solanum tuberosum. 8 samples. Type: Expression profiling by high throughput sequencing.
Small RNAs from sweet potato upon wounding
GEO Series GSE46457. Ipomoea batatas. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Evaluation of Edaphic Microbial Ammonium Oxidizing Communities during a Yellow Potato Cycle Culture
GEO Series GSE71824. soil metagenome. 3 samples. Type: Expression profiling by high throughput sequencing; Other.
Potato psyllids mount distinct gut responses upon infection with each of the two ‘Candidatus Liberibacter solanacearum’ haplotypes
GEO Series GSE206877. Bactericera cockerelli. 18 samples. Type: Expression profiling by high throughput sequencing.
NGS of small RNA reads in sampled potato plants from the highlands of Colombia
GEO Series GSE157752. Solanum tuberosum; Solanum phureja. 5 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Transcriptome profiles of contrasting potato (Solanum tuberosum L.) genotypes under water stress
GEO Series GSE140083. Solanum tuberosum. 24 samples. Type: Expression profiling by high throughput sequencing.
Assembled mRNAs from potato genotypes contrasted for their hexanal isomerase activity
<p>From PacBio and Illumina mRNA-seq coming from leaf total RNA isolated from three <em>Solanum tuberosum</em> genotypes (Desiree, Phureja153 and S869), mRNA isoforms were assembled.</p> <ul> <li><strong>Phureja153:</strong> low (3Z):(2E) hexenal isomerase activity</li> <li><strong>Desiree:</strong> mid (3Z):(2E) hexenal isomerase activity</li> <li><strong>S869</strong>: high (3Z):(2E) hexenal isomerase activity</li> </ul> <p> </p> <p><strong>== Step1: PacBio subreads to FASTA and GTF annotation == </strong></p> <p>For each genotype, a FASTA file and a GTF annotation file are available. File is called "<a href="https://zenodo.org/api/files/e5e70d61-d4cc-4896-8eb1-b41447b8859d/pacbio_assembled_isoforms.tar.gz?versionId=a91bb81f-3442-427c-be96-190f19b4bf3c">pacbio_assembled_isoforms.tar.gz</a>".</p> <p>Pipeline used: <a href="https://github.com/SilkeAllmannLab/pacbio_snakemake/releases/tag/v0.1.0">https://github.com/SilkeAllmannLab/pacbio_snakemake/releases/tag/v0.1.0</a></p> <p>Raw PacBio data submitted to NCBI EBI ENA under accession PRJXXX.</p> <p>=== Step 2: SQANTI QC ====</p> <p><a href="https://github.com/ConesaLab/SQANTI3/wiki/Introduction-to-SQANTI3">SQANTI3</a> was run on these three PacBio assembled sets of transcript to correct them.</p> <p>The corrected transcripts and related SQANTI3 info are available in the "<a href="https://zenodo.org/api/files/e5e70d61-d4cc-4896-8eb1-b41447b8859d/sqanti_corrected_transcripts.tar.gz">sqanti_corrected_transcripts.tar.gz</a>" file.</p> <p> </p> <p> </p>
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International Brain Laboratory public data
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OpenNeuro
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