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409
datasets available to search
ShareScore release 0.9.0
Dataset results
409 results for “genome organization”
Genomic Whole-Organ Map of Mucosal Field Effects Initiating Human Bladder Carcinogenesis
GEO Series GSE125286. Homo sapiens. 61 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array; Methylation profiling by high throughput sequencing.
Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation
GEO Series GSE215180. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Cohesin interacts with a panoply of splicing factors required for cell cycle progression and genomic organization
GEO Series GSE114539. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spatial 3D genome organization controls the activity of bivalent chromatin during human neurogenesis [RNA-seq]
GEO Series GSE274039. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
3D genome organization in tissue regeneration: functional requirement of long-range chromatin loops [RNA-seq]
GEO Series GSE304453. Drosophila melanogaster. 21 samples. Type: Expression profiling by high throughput sequencing.
Spatial genome re-organization between fetal and adult hematopoietic stem cells (ATAC-Seq)
GEO Series GSE119198. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spatial genome organization is associated with nematode programmed DNA elimination [Hi-C Parascaris univalens]
GEO Series GSE315650. Parascaris univalens. 5 samples. Type: Other.
3D genome organization by CTCF prevents exTreg differentiation to control autoimmunity peripheral tolerance and immunotherapy outcomes [Hi-C]
GEO Series GSE274543. Mus musculus. 8 samples. Type: Other.
Nucleosome positioning and sensitivity suggest novel functional organization of the purple sea urchin (Strongylocentrotus purpuratus) genome
GEO Series GSE283453. Strongylocentrotus purpuratus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Deep conservation of cis-regulatory elements and chromatin organization in echinoderms uncover ancestral regulatory features of animal genomes [Hi-C]
GEO Series GSE281901. Patiria miniata; Strongylocentrotus purpuratus. 2 samples. Type: Other.
3D organization of chicken genome demonstrates evolutionary conservation of topologically associated domains and highlights unique architecture of erythrocytes’ chromatin [Hi-C]
GEO Series GSE96037. Gallus gallus. 6 samples. Type: Other.
Large-scale manipulation of radial positioning does not affect most aspects of genome organization
GEO Series GSE276554. Homo sapiens. 8 samples. Type: Other.
Diurnal 3D genome organization remodeling orchestrates rhythmic gene expression in rice [HiC]
GEO Series GSE221374. Oryza sativa Indica Group. 4 samples. Type: Other.
Genome-wide analyses of organ-specific DNA methylation and transcription in Arabidopsis thaliana
GEO Series GSE10703. Arabidopsis thaliana. 50 samples. Type: Methylation profiling by genome tiling array; Expression profiling by genome tiling array.
Cohesin Regulates 3D Accessible Genome Organization and Function
GEO Series GSE144505. Mus musculus. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation [ATAC-Seq]
GEO Series GSE242000. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D genome organization in tissue regeneration: functional requirement of long-range chromatin loops [Hi-C]
GEO Series GSE304452. Drosophila melanogaster. 4 samples. Type: Other.
Brassica biased gene retention during diploidization linked to 3D genome organization
GEO Series GSE132231. Brassica rapa; Brassica oleracea. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Full genome qRT PCR of Staphylococcus aureus strains USA300 and TB15 during infection of 5 organs
GEO Series GSE24701. Staphylococcus aureus. 10 samples. Type: Expression profiling by RT-PCR.
Deeply hidden genome organization mediated by base-unpairing regions (BURs) directly bound by SATB1 linked to transcription
GEO Series GSE191146. Mus musculus. 38 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.