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Figure 7 in Evolution and phylogeny of glass-sponge-associated zoantharians, with a description of two new genera and three new species

Figure 7. Images of external and internal morphology of Vitrumanthus vanderlandi (holotype: RMNH.COEL.42623).A, preserved polyps on Aphrocallistes beatrix; B, C, close-up image of polyp; D, close-up image of tentacle musculature; E, longitudinal section of polyp; F, drawing of cyclically transitional marginal musculature. Abbreviations: A, actinopharynx; Te, tentacle; Tem, tentacle musculature; Ctmm, cyclically transitional marginal musculature. Scale bars: 3 mm (A), 1.5 mm (B, C, E), mm (C), 0.3 mm (D).

Figure 6 in Evolution and phylogeny of glass-sponge-associated zoantharians, with a description of two new genera and three new species

Figure 6. Images of external and internal morphology of Vitrumanthus schrieri (A, photographic record: image was taken at the entrance of Piscadera Bay, 12°07'06"N, 68°58'34"W; B–F, holotype: RMNH.COEL.42429). A, living polyps on Verrucocoeloidea liberatorii in situ; B, preserved polyps; C, close-up image of preserved polyp; D, close-up image of tentacle musculature; E, close-up image of cyclically transitional marginal musculature; F, drawing of cyclically transitional marginal musculature. Abbreviations: A, actinopharynx; Tem, tentacle musculature; Ctmm, cyclically transitional marginal musculature. Scale bars: 10 mm (A), 25 mm (B), 5 mm (C), 0.5 mm (D, E).

Figure 5 in Evolution and phylogeny of glass-sponge-associated zoantharians, with a description of two new genera and three new species

Figure 5. Cnidae in the tentacles, column, actinopharynx and mesenterial filaments of holotypes of new species in this study. A, cnidae of Churabana kuroshioae; B, cnidae of Vitrumanthus schrieri; C, cnidae of Vitrumanthus vanderlandi; D, cnidae of Vitrumanthus oligomyarius. Abbreviations: Hl, holotrichs large; Hm, holotrichs medium; Hs, holotrich small; O, basitrichs and microbasic b-mastigophores; Pm, microbasic p-mastigophores; S, spirocysts.

Figure 4 in Evolution and phylogeny of glass-sponge-associated zoantharians, with a description of two new genera and three new species

Figure 4. Images of external and internal morphology of Churabana kuroshioae (A, paratype: NSMT Co-1754; B–I, holotype: RUMF-ZG-04447). A, living polyps on Pararete sp.1 in situ at Nanpo Trough, Kikaijima Island; B, living polyps on Pararete sp.2 in an aquarium at Okinawa Churaumi Aquarium, Motobu, Japan; C, close-up image of preserved polyp; D–F, longitudinal section of polyp; G, cross-section of polyp; H, close-up image of cyclically transitional marginal musculature; I, drawing of cteniform endodermal marginal musculature. Abbreviations: A, actinopharynx; Dd, dorsal directives; Cemm, cteniform endodermal marginal musculature; Ec, ectoderm; En, endoderm; M, mesoglea; S, siphonoglyph; O, oral disk; 5th, fifth mesentery from dorsal directives. Scales: 5 mm (A, B), 2 mm (C–H).

Figure 2 in Evolution and phylogeny of glass-sponge-associated zoantharians, with a description of two new genera and three new species

Figure 2. Maximum likelihood tree based on combined dataset of COI, 12S-rDNA, 16S-rDNA, 18S-rDNA, 28S-rDNA and ITS-rDNA. Green-coloured box indicates Hexasterophora sponge-associated zoantharians and blue coloured boxes indicate Amphidiscophora sponge-associated zoantharians. Number at nodes represent ML bootstrap values (> 50% are shown). Black circles on nodes indicate high support of Bayesian posterior probabilities (> 0.95).

Figure 1 in Evolution and phylogeny of glass-sponge-associated zoantharians, with a description of two new genera and three new species

Figure 1. Distribution of hexactinellid sponge-associated zoantharians examined in this study. Enclosed symbols indicate Hexasterophora sponge-associated zoantharians: Churabana kuroshioae (dark blue), Vitrumanthus schrieri (red), Vitrumanthus vanderlandi (green), Vitrumanthus oligomyarius (yellow). Boxes indicate Amphidiscophora spongeassociated zoantharians: Epizoanthus aff. armatus (grey), Epizoanthus fatuus (violet), Epizoanthus stellaris (light blue), Epizoanthus aff. fatuus (pink), Kauluzoanthus sp. (black).

Figure 3 in Evolution and phylogeny of glass-sponge-associated zoantharians, with a description of two new genera and three new species

Figure 3. Images of preserved Amphidiscophora spongesassociated zoantharians. A, B, Epizoanthus fatuus collected from Japan; C, Epizoanthus aff. fatuus collected from Australia; D, Epizoanthus stellaris collected from Australia; E, Epizoanthus aff. armatus collected from Japan. Scales: 10 mm.

opencc-by-4.0Mar 2022View details →

Predicting the failure of two-dimensional silica glasses

Datasets for the paper: Font-Clos F, Zanchi M, Hiemer S, Bonfanti S, Guerra R, Zaiser M, Zapperi S. Predicting the failure of two-dimensional silica glasses. arXiv preprint arXiv:2201.09723. 2022 Jan 24. <a href="https://arxiv.org/abs/2201.09723">https://arxiv.org/abs/2201.09723</a> The datasets can be used together with the codes available at <a href="https://github.com/ComplexityBiosystems/2D-silica-ML">https://github.com/ComplexityBiosystems/2D-silica-ML</a> to reproduce the resuts of the paper above. In particular, the datasets contain the the following data <ul> <li>The dataset '20201222-var02-onethousand.zip' contains configurations at fixed disorder (s2= 0.2).</li> <li>The dataset '20210209-variable-disorder.zip' contains configurations at variable disorder.</li> <li>The dataset 'ml_dataset_fracture_atoms_var02.tar.gz' contains the images for the prediction of the crack path.</li> <li>The dataset 'ml_dataset_var02.tar.gz' contains images of silica at fixed disorder (s2= 0.2). for the prediction of disorder, rupture strain and location.</li> <li>The dataset 'ml_dataset_variable_var.tar.gz' contains images of silica at variable disorder for the prediction of disorder, rupture strain and location.</li> <li>The dataset 'trained_models' contains an example of a ResNet trained for predicting rupture strain at variable disorder (it can be used for testing the Grad-CAM method).</li> </ul>

FIGURE 5 in Low morphological and genetic variation within the glass-perchlet Parambassis siamensis (Teleostei: Ambassidae) in Peninsular Malaysia

FIGURE 5. Photographs of specimens of Parambassis siamensis showing body pigmentation and body shape variations. A) Holotype of Chanda punctulata (BMNH 1931.7.20.56); B) Specimen from Lake Bera (Pahang River basin) having dense melanophore coverage (SL: 36.6 mm); C) Specimen from Bera River (Pahang River basin) having very light melanophore coverage (SL: 37.0 mm); D) Holotype of Parambassis siamensis (ANSP 68233); E) Specimen from Lake Muda (Muda River basin) having deeper body depth (SL: 38.2 mm); F) Specimen from Bukit Merah (Kurau River basin) having slender body depth (SL: 29.0 mm).

FIGURE 3 in Low morphological and genetic variation within the glass-perchlet Parambassis siamensis (Teleostei: Ambassidae) in Peninsular Malaysia

FIGURE 3. Scatterplots of the sheared first and second principal component scores (PC1 versus PC2) of 20 morphometric variables comparing six populations of Parambassis siamensis. Color code: light blue (Bera River); blue (Lake Bera); green (Bukit Merah); yellow (Lake Bersia); red (Lake Muda); purple (Bangkok).

FIGURE 2 in Low morphological and genetic variation within the glass-perchlet Parambassis siamensis (Teleostei: Ambassidae) in Peninsular Malaysia

FIGURE 2. Illustration of the point-to-point morphological measurements and meristic counts examined in this study. Each measurement description is given in Tables S1 and S2. Counted scales are highlighted in blue.

FIGURE 1 in Low morphological and genetic variation within the glass-perchlet Parambassis siamensis (Teleostei: Ambassidae) in Peninsular Malaysia

FIGURE 1. Geographic distribution of Parambassis siamensis in Southeast Asia. Insert map of Peninsular Malaysia indicates the sampling localities. Red star indicates the estimated type locality of P. siamensis and C. punctulata; black circles represent the known distribution of P. siamensis. Raw data was extracted from GBIF database (https://www.gbif.org/). Open stars indicate the populations examined using the morphological and molecular approaches; open circles indicate the populations examined using only the molecular approach.

FIGURE 4. A in Low morphological and genetic variation within the glass-perchlet Parambassis siamensis (Teleostei: Ambassidae) in Peninsular Malaysia

FIGURE 4. A) Maximum Likelihood (ML) tree of Parambassis siamensis from Peninsular Malaysia based on COI sequences as inferred using RaxML-HPC2 and the model of sequence evolution GTR + G. Branch lengths are proportional to the number of substitutions. Numbers at nodes are Bootstrap Proportion (shown in % when>80%). This tree is rooted with a specimen of Parambassis ranga. B) Unrooted network of Parambassis siamensis from Peninsular Malaysia based on COI haplotypes inferred with the software PopArt and a median-joining algorithm.

Figure 22 in The Electric Glass Knifefishes of the Eigenmannia trilineata species-group (Gymnotiformes: Sternopygidae): monophyly and description of seven new species

Figure 22. Lateral view of head of Eigenmannia vicentespelaea, MZUSP 83461, 108.5 mm LEA, Cave São Vicente I, Rio São Vicente, Rio Tocantins basin, Goiás, Brazil, approximately 13°35′30″ S, 46°21′ W.

Figure 23 in The Electric Glass Knifefishes of the Eigenmannia trilineata species-group (Gymnotiformes: Sternopygidae): monophyly and description of seven new species

Figure 23. Lateral view of Eigenmannia waiwai sp. nov., holotype, INPA 37594, 146.1 mm LEA, Rio Mapuera near Cachoeira Porteira, Rio Trombetas basin, Município de Oriximiná, Pará, Brazil, 1°04′60″ S, 57°01′60″ W.

Figure 21 in The Electric Glass Knifefishes of the Eigenmannia trilineata species-group (Gymnotiformes: Sternopygidae): monophyly and description of seven new species

Figure 21. Lateral view of Eigenmannia vicentespelaea, MZUSP 83461, 108.5 mm LEA, Cave São Vicente I, Rio São Vicente, Rio Tocantins basin, Goiás, Brazil, approximately 13°35′30″ S, 46°21′ W.

Figure 20 in The Electric Glass Knifefishes of the Eigenmannia trilineata species-group (Gymnotiformes: Sternopygidae): monophyly and description of seven new species

Figure 20. Lateral view of head of Eigenmannia trilineata, holotype, MACN 5470, 129.9 mm LEA, Río de La Plata, near Nuñes, Río de La Plata basin, Argentina, approximately 34°25′40.27″ S, 58°28′21.2″ W.

Figure 18 in The Electric Glass Knifefishes of the Eigenmannia trilineata species-group (Gymnotiformes: Sternopygidae): monophyly and description of seven new species

Figure 18. Lateral view of head of Eigenmannia pavulagem sp. nov., holotype, MPEG 6887, 176.6 mm LEA, Igarapé Paraquequara, Rio Capim, Rio Guamá basin, Município de Paragominas, Pará, Brazil, 3°14′50 ″ S, 47°45′50″ W.

Figure 17 in The Electric Glass Knifefishes of the Eigenmannia trilineata species-group (Gymnotiformes: Sternopygidae): monophyly and description of seven new species

Figure 17. Lateral view of Eigenmannia pavulagem sp. nov., holotype, MPEG 6887, 176.6 mm LEA, Igarapé Paraquequara, Rio Capim, Rio Guamá basin, Município de Paragominas, Pará, Brazil, 3°14′50″ S, 47°45′50″ W.

Figure 14 in The Electric Glass Knifefishes of the Eigenmannia trilineata species-group (Gymnotiformes: Sternopygidae): monophyly and description of seven new species

Figure 14. Lateral view of head of Eigenmannia microstoma, MCP 19840, 182.9 mm LEA, Brazil, Minas Gerais, Rio São Francisco between Município de Três Marias and Pirapora, Rio São Francisco basin, 18°13′ S, 45°15′ W.