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1,074 results for “invasive species”

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Data from: Seed dispersal effectiveness by a large-bodied invasive species in defaunated landscapes

Animal-dispersed plants are increasingly reliant on effective seed dispersal provided by small-bodied frugivores in defaunated habitats. In the Neotropical region the non-native wild pig (Sus scrofa) is expanding its distribution and we hypothesized that they can be a surrogate for seed dispersal services lost by defaunation. We performed a thorough analysis of their interaction patterns, interaction frequencies, seed viability and characteristics of the seed shadows they produce. We found 15,087 intact seeds in 56% of the stomachs and 5186 intact seeds in 90% of the scats analyzed, 95% of which were smaller than 10 mm in diameter. Wild pigs were the third most effective disperser among 21 extant frugivore species in a feeding trail experiment in terms of quantity of seeds removed and gut retention time was 70 ±23 h, indicating they can promote long distance seed dispersal. Seed survival after seed handling and gut passage by wild pigs was positively related with seed size, but large seeds were spat out and only smaller were defecated intact, for which we observed a positive or neutral effect on germination relative to manually de-pulped seeds. Finally, deposition of seeds were four times more frequent in unsuitable than suitable sites for seedling recruitment and establishment. Seed dispersal effectiveness by wild pigs is high in terms of the quantity of seeds dispersed but variable in terms of the quality of the service provided. Our study highlights that negative and positive effects delivered by non-native species should be examined in a case by case scenario.

opencc-zeroSep 2019View details →
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Data from: Invasive seaweeds transform habitat structure and increase biodiversity of associated species

The visual landscape of marine and terrestrial systems is changing as a result of anthropogenic factors. Often these shifts involve introduced species that are morphologically dissimilar to native species, creating a unique biogenic structure and habitat for associated species within the landscape. While community level changes as a result of introduced species have been documented in both terrestrial and marine systems, it is still unclear how long-term shifts in species composition will affect habitat complexity or its potential to influence the biodiversity of species that occur at the base of the food web. We analysed quadrat photos collected at several subtidal sites in the Gulf of Maine over a 30+ year period, and collected individual seaweed species to determine their complexity and the biodiversity of meso-invertebrates associated with each species. By coupling the relationship of 30+ years of shifts in seaweed assemblages, morphological structure of the seaweed assemblage, and their meso-invertebrates, we determined introduced seaweeds have increased by up to 90%, corresponding to a rise in two-dimensional (2D) structure, and a decline in canopy height of subtidal rocky habitats. The highly complex two-dimensional habitat provided by introduced filamentous red seaweeds supports 2 to 3 times more meso-invertebrate individuals and species that form the base of the food web than simpler forms of morphological habitat. Synthesis: The present study demonstrates a long-term shift in foundation species towards a dominance of invasive seaweeds that directly reduce canopy height and increase the 2D biogenic structure of the habitat. These introduced seaweeds harbour greater biodiversity of species found at the base of the food web than seaweeds with simpler forms such as the native kelp species. Such shifts in habitat structure will propagate to food-webs by influencing the structure of lower trophic level meso-invertebrates and indirectly upper trophic level species that feed on these invertebrates and use the seaweed structure as refuge.

opencc-zeroDec 2016View details →
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Data from: Invasive species removal increases species and phylogenetic diversity of wetland plant communities

Plant invasions result in biodiversity losses and altered ecological functions, though quantifying loss of multiple ecosystem functions presents a research challenge. Plant phylogenetic diversity correlates with a range of ecosystem functions, and can be used as a proxy for ecosystem multifunctionality. Laurentian Great Lakes coastal wetlands are ideal systems for testing invasive species management effects because they support diverse biological communities, provide numerous ecosystem services, and are increasingly dominated by invasive macrophytes. Invasive cattails are among the most widespread and abundant of these taxa. We conducted a three-year study in two Great Lakes wetlands, testing the effects of a gradient of cattail removal intensities (mowing, harvest, complete biomass removal) within two vegetation zones (emergent marsh, wet meadow) on plant taxonomic and phylogenetic diversity. To evaluate native plant recovery potential, we paired this with a seed-bank emergence study that quantified diversity metrics in each zone under experimentally manipulated hydroperiods. Pre-treatment, we found that wetland zones had distinct plant community composition. Wet meadow seed banks had greater taxonomic and phylogenetic diversity than emergent marsh seed banks, and high-water treatments tended to inhibit diversity by reducing germination. Aboveground harvesting of cattails and their litter increased phylogenetic diversity and species richness in both zones, more than doubling richness compared to unmanipulated controls. In the wet meadow, harvesting shifted the community toward an early successional state, favoring seed-bank germination from early seral species, whereas emergent marsh complete removal treatments shifted the community toward an aquatic condition, favoring floating-leaved plants. Removing cattails and their litter increased taxonomic and phylogenetic diversity across water levels, a key environmental gradient, thereby potentially increasing the multifunctionality of these ecosystems. Killing invasive wetland macrophytes but leaving their biomass <i>in situ</i> does not address their underlying mechanism of dominance and is less effective than more intensive treatments that also remove their litter.

opencc-zeroDec 2018View details →
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Data from: High parasite infection level in non-native invasive species: it is just a matter of time

The Enemy Release Hypothesis is often used to explain the success of non-native species invasions. Growing evidence indicates that parasite or pathogen species richness increases over time in invasive non-native species; however, this increase should not directly translate into release from enemy pressure as infection intensity of parasites (number of parasites per host) has a more profound impact on host fitness. The changes in intensity of parasitic infections in invasive non-native species have not yet been thoroughly analysed in newly colonized areas. The goal of this study was to determine whether gastrointestinal parasite (nematode and trematode) infection intensity has increased with time since the populations of American mink (Neovison vison) were established and how host demographic parameters affect infection intensity. We tested the Enemy Release Hypothesis by substituting space for time, evaluating parasite abundance in American mink at six sites along a chronosequence of mink invasion history. Nematode and trematode abundance increased with time since mink introduction, from a few parasites on average per mink after 16 years, to 200-250 parasites per mink after 34 years. The rate of increase in parasite abundance varied among demographic groups of mink (sex and age). Both nematodes and trematodes were more abundant in males than in females, and in subadults than in adults. Higher nematode abundance negatively affected body condition of mink. Our results provide evidence that non-native species are released from enemy pressure only in the first phase of invasion, and that infection is modulated by host demographics and season. These results contribute to the evaluation of the long-term patterns of parasite accumulation in invasive non-native species after their colonization of new territories.

opencc-zeroDec 2016View details →
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Invasive species and biotic homogenization in temperate aquatic plant communities

<p>Aim: Biotic homogenization (BH), a reduction in the distinctness of species composition between geographically separated ecological communities in a region, is an important but underappreciated potential consequence of biological invasions. While BH theory has always considered invasions, it has generally been in a relatively narrow context, i.e., that the cosmopolitan nature of invasive species increases BH because of their shared presence across many locations. We sought to evaluate this component of BH as well as broader effects of invasive species on BH through changes in native communities, including overall reductions in species richness or shifts in species composition.</p> <p>Location: Minnesota, USA</p> <p>Time Period: 2002-2014</p> <p>Major Taxa Studied: Aquatic macrophytes, including both vascular plants and attached macroalgae.</p> <p>Methods: We used surveys of aquatic macrophyte communities from 1,102 shallow lakes in Minnesota, USA (including 248 lakes with repeated surveys) to evaluate relationships between invasion, native species, and BH.</p> <p>Results: We found that the presence of invasive species was associated with BH and that this pattern was reflected in both the total community (i.e., with invasive species included) and in the composition of the native species community alone. We found that invaded lakes were more compositionally similar to each other than uninvaded lakes, but that both groups were becoming more similar over time—despite neither group exhibiting declines in species richness. This pattern was largely driven by shifts in the native community itself, with common species becoming more widespread and rare species becoming rarer.</p> <p>Main Conclusions: Invasive species increase measures of community similarity through their own presence in multiple locations, and also by influencing the composition of native species. These patterns have important implications for conservation and management and suggest that BH should be considered more widely in evaluating the impacts of biological invasions and developing response strategies.</p>

opencc-zeroFeb 2020View details →
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Data from: Complementary responses of morphology and physiology enhance the stand-scale production of a model invasive species under elevated CO2 and nitrogen

1. Elevated atmospheric carbon dioxide (eCO2) concentrations and nitrogen (N) enrichment are known to enhance plant productivity and invasion. However, the implications of their interactive effects for plant productivity are not well understood, especially at the stand scale, presumably because morphological and physiological responses to these global change factors are rarely studied together in the field or assessed at the stand-level. 2. We first determined how leaf-level morphological and physiological traits responded to factorial combinations of ambient and elevated CO2 and N. We collected trait data from the model invasive species Phragmites australis (common reed) that were measured over three years in a long-term global change field experiment. We then combined the trait data and additional descriptions of P. australis canopies in a simulation model of carbon assimilation to determine how morphology and physiology contribute to P. australis' stand scale productivity. 3. At the leaf level, we found that light-saturated rates of photosynthesis were strongly stimulated by eCO2 (37%) and that this effect was enhanced by increasing salinity. N had a smaller effect (17% stimulation) on physiological responses than eCO2, but leaf morphological traits responded primarily to N; plant height increased by 27% and leaf area increased by 47%. 4. Stand scale simulations demonstrated that that morphological and physiological adjustments induced approximately additive responses when P. australis experienced both eCO2 and N enrichment. The simulations also indicated that morphological changes (which were primarily associated with canopy size) influenced stand scale carbon assimilation more than physiological changes. Moreover, 97% of the N response was due to changes in morphology, whereas 62% of the eCO2 response was caused by physiological shifts. 5. Our analysis indicates that morphological and physiological trait responses to elevated CO2 and nitrogen are likely to enhance the productivity of P. australis in complementary ways, potentially accelerating its invasion in North America. Furthermore, our data suggest that changes in morphological traits may have a greater influence on carbon gain than leaf-level physiology under near-future environmental conditions. Our study also highlights the importance of accounting for both morphological and physiological responses when attempting to infer global change responses from leaf-level data.

opencc-zeroDec 2017View details →
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Data from: Phylogeography of Petrolisthes armatus, an invasive species with low dispersal ability

Theoretically, species with high population structure are likely to expand their range, because marginal populations are free to adapt to local conditions; however, meta-analyses have found a negative relation between structure and invasiveness. The crab Petrolisthes armatus has a wide native range, which has expanded in the last three decades. We sequenced 1718 bp of mitochondrial DNA from native and recently established populations to determine the population structure of the former and the origin of the latter. There was phylogenetic separation between Atlantic and eastern Pacific populations, and between east and west Atlantic ones. Haplotypes on the coast of Florida and newly established populations in Georgia and South Carolina belong to a different clade from those from Yucatán to Brazil, though a few haplotypes are shared. In the Pacific, populations from Colombia and Ecuador are highly divergent from those from Panamá and the Sea of Cortez. In general, populations were separated hundreds to million years ago with little subsequent gene flow. High genetic diversity in the newly established populations shows that they were founded by many individuals. Range expansion appears to have been limited by low dispersal rather than lack of ability of marginal populations to adapt to extreme conditions.

opencc-zeroDec 2016View details →
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Data from: How traffic facilitates population expansion of invasive species along roads: the case of common ragweed in Germany

1. Because common ragweed (Ambrosia artemisiifolia L., henceforth Ambrosia) has negative effects on human health, it is a common focus for management, which would benefit from a better understanding of the underlying mechanisms by which the species spreads. Road systems are known to be invasion corridors, but the conduit function of vehicles for the rapid spread of Ambrosia along roads and for population extension along roadside verges has not yet been demonstrated convincingly. 2. To quantify the effect of different traffic volumes on the dispersal and population extension of Ambrosia we used two approaches: First, by combining field experiments along roads with records of the seed rain around single plants, we simulated a combined dispersal kernel that revealed the interactions between primary dispersal and traffic-mediated secondary dispersal. Second, we recorded seedling recruitment around isolated roadside populations over two years to determine how traffic-related parameters affect population extension. 3. The longest traffic-mediated dispersal distances exceeded those of primary dispersal by about one order of magnitude. Traffic volume had a significant positive effect on dispersal distances and on the lateral deposition of seeds on the road verge. 4. Seedling recruitment around isolated roadside populations was significantly higher in the driving direction than against, but only at the distance where the major seed rain of traffic-mediated dispersal is to be expected according to the combined dispersal kernel (3-15 m). 5. Synthesis and applications: This study isolates effects of road traffic from confounding mechanisms (e.g. mowing machinery, propagule pressure from infested fields) on common ragweed (Ambrosia artemsiifolia L.) invasions. Results demonstrate traffic-mediated dispersal in Ambrosia invasions as a routine and predictable process that facilitates population extension in the direction of traffic along roadsides, depending on traffic volume. This highlights the importance of prioritizing mowing along high use roads and mowing of isolated populations to prevent seed abscission and further spread of common ragweed Ambrosia.

opencc-zeroDec 2017View details →
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Data from: Smooth brome invasion increases rare soil bacterial species prevalence and alters soil bacterial community composition

Plant and soil communities are tightly linked, but the mechanisms by which the invasion of an exotic plant and the resulting shifts in plant diversity and productivity influence soil bacterial community structure remain poorly understood. We investigated the effects of invasive smooth brome (Bromus inermis) on grassland soil bacterial community structure using massively-parallel sequencing of the 16S rRNA gene to determine bacterial community richness, evenness, composition, and beta diversity (UniFrac indices) of soils collected along a gradient of smooth brome abundance. We evaluated several hypotheses including: a) that the declines in native plant diversity associated with smooth brome invasion would cause declines in bacterial community diversity, and b) that mechanisms driving smooth brome effects on bacterial community structure involved altered soil edaphic properties rather than preferential invasion in areas of high soil nitrogen and distinct soil microbial communities. Smooth brome invasion led to increased soil nitrogen, soil carbon and root biomass. Bacterial evenness and bacterial richness increased with increasing smooth brome cover, while bacterial beta diversity declined. We found no evidence of a dominant direct link between the alteration of soil edaphic properties by brome and the changes in the soil bacterial community. Rather, the main controls on the soil bacterial community were direct effects of pH and smooth brome that could not be linked to the edaphic changes. The most important effect of brome on the bacterial community was the selective suppression of dominant bacterial species, which allowed rarer bacteria to increase in relative abundance. Synthesis: Here we show that plant community composition influences bacterial community structure at a very fine scale, but that these changes are not due to altered soil total nitrogen or carbon content. The dominant direct effect of smooth brome invasion on soil communities suggests non-edaphic, i.e. inter and intra-trophic, interactions among smooth brome and non-bacterial components of the soil ecosystem are key drivers of soil community structure. Some of the data in this repository were also reported in the following paper: Piper, C.L., Lamb, E.G. &amp; Siciliano, S.D. (In Press) Smooth brome changes gross soil nitrogen cycling processes during invasion of a rough fescue grassland. Plant Ecology. doi:10.1007/s11258-014-0431-y

opencc-zeroDec 2013View details →
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Data from: Biogeographic variation of distance-dependent effects in an invasive tree species

1.Plant pathogens and herbivores can maintain forest diversity by reducing survival of tree seedlings close to conspecifics. However, how biogeographic variation in these natural enemies affects such distance‐dependent processes is unknown. Because invasive plants escape ecologically important enemies when introduced to a new range, distance‐dependent mortality may differ between their native and introduced ranges. 2. Here, we test whether the invasive tree Triadica sebifera escaped distance‐dependent mortality when introduced to the US from China, and examine the roles of natural enemies in native and introduced ranges. In both US and China, we performed field surveys along with field and greenhouse experiments with field collected soils and soil sterilization treatments. 3. In field surveys and the field experiment, insect damage on T. sebifera seedlings decreased with distance to conspecific trees in the native range (China) but damage was low at all distances in the introduced range (US). In the greenhouse experiment testing the effects of soil pathogens, T. sebifera seedling mortality decreased with soil distance from conspecific trees in both ranges but distance‐independent mortality was higher in native range soils. 4. Our findings indicate that both insect herbivores and the soil biota contribute to distance‐ dependent effects on T. sebifera in its native range. They suggest, however, that plants may more readily escape herbivore than soil biota distance‐dependent effects when introduced to a new range and so herbivores, rather than soil pathogens, contribute more strongly to biogeographic variation in distance‐dependent effects. These results highlight the importance of considering species biogeographic variation in distance‐dependent effects and teasing apart the roles that different natural enemies play when studying species coexistence, community diversity, and biological invasions.

opencc-zeroDec 2018View details →
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Data from: Selective differentiation during the colonization and establishment of a newly invasive species

The potential for rapid evolution in invasive species makes them useful for studying adaptive responses of populations to novel environments. However, phenotypic divergence during invasion is not necessarily due to selection, but may be a product of neutral processes resulting from population bottlenecks during colonization and range expansion. We investigated phenotypic adaptation during the establishment and range expansion of the invasive bunchgrass, slender false brome (Brachypodium sylvaticum; Poaceae). Utilizing a novel approach, we made robust comparisons of functional traits using genetic similarity based on unique alleles to determine the genetic probability of contribution from native source regions, and integrated these probabilities into our QST‐FST comparisons for twelve physiological and anatomical traits associated with drought stress in the introduced range. Our results indicate phenotypic divergence greater than neutral expectations in five traits between native and invasive populations, indicating selective divergence occurred during invasive species establishment. Results indicate that the majority of divergence in B. sylvaticum occurred after introduction to the novel environment, but prior to invasive range expansion. This study provides evidence for adaptive genetic differentiation during the establishment of an invasive species, while also describing a robust method for detection of selective processes after species introduction to a novel environment.

opencc-zeroDec 2017View details →
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Flight capacity increases then declines from the core to the margins of an invasive species' range

<p>Individuals that disperse farther than other individuals are more likely to be on the frontlines of spreading populations and may be more likely to mate with one another as a consequence of their spatial proximity. Over generations, this process—known as spatial sorting—can produce patterns of increasing dispersal ability from a population's core towards the spreading front. By contrast, when the spread of a population is limited by the availability of suitable habitat, theory predicts that range boundaries can select against more dispersive phenotypes and produce patterns of decreasing dispersal capacity towards population margins. In a common garden study of invasive kudzu bugs (<i>Megacopta cribraria</i>)—which are limited by the availability of hostplants in their southern and western margins—I show that midrange individuals fly 49% farther than individuals in the core and 37% farther than individuals at margins. This result highlights that other processes, such as maternal effects or selection at range boundaries, may create more complicated patterns of dispersal ability across landscapes than predicted by models of spatial sorting alone.</p>

opencc-zeroNov 2019View details →
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Data from: Using ABC and microsatellite data to detect multiple introductions of invasive species from a single source

The introduction of invasive species to new locations (that is, biological invasions) can have major impact on biodiversity, agriculture and public health. As such, determining the routes and modality of introductions with genetic data has become a fundamental goal in molecular ecology. To assist with this goal, new statistical methods and frameworks have been developed, such as approximate Bayesian computation (ABC) for inferring invasion history. Here, we present a model of invasion accounting for multiple introductions from a single source (MISS), a heretofore largely unexplored model. We simulate microsatellite data to evaluate the power of ABC to distinguish between single and multiple introductions from the same source, under a range of demographic parameters. We also apply ABC to microsatellite data from three invasions of bumblebee in New Zealand. In addition, we assess the performance of several methods of summary statistics selection. Our simulated results suggested good ability to distinguish between one- and two-wave models over much but not all of the parameter space tested, independent of summary statistics used. Globally, parameter estimation was good except for bottleneck timing. For one of the bumblebee species, we clearly rejected the MISS model, while for the other two we found inconclusive results. Since a second wave may provide genetic reinforcement to initial colonists, help relieve inbreeding among founders, or increase the hazard of the invasion, its detection may be crucial for managing invasions; we suggest that the MISS model could be considered as a potential model in future theoretical and empirical studies of invasions.

opencc-zeroDec 2014View details →
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Data from: Do deposit-feeders compete? Isotopic niche analysis of an invasion in a species-poor system

Successful establishment of invasive species is often related to the existence of vacant niches. Competition occurs when invaders use the same limiting resources as members of the recipient community, which will be reflected in some overlap of their trophic niches. The concept of isotopic niche has been used to study trophic niche partitioning among species. Here, we present a two-year field study comparing isotopic niches of the deposit-feeding community in a naturally species-poor system. The isotopic niche analyses showed no overlap between a recent polychaete invader and any of the native species suggesting that it has occupied a vacant niche. Its narrow isotopic niche suggests specialized feeding, however, the high d15N values compared to natives are most likely due to isotope fractionation effects related to nitrogen recycling and a mismatch between biological stoichiometry of the polychaete and the sediment nitrogen content. Notably, highly overlapping isotopic niches were inferred for the native species, which is surprising in a food-limited system. Therefore, our results demonstrate that invaders may broaden the community trophic diversity and enhance resource utilization, but also raise questions about the congruence between trophic and isotopic niche concepts and call for careful examination of assumptions underlying isotopic niche interpretation.

opencc-zeroDec 2014View details →
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Data from: Shrubs as ecosystem engineers across an environmental gradient: effects on species richness and exotic plant invasion

Ecosystem-engineering plants modify the physical environment and can increase species diversity and exotic species invasion. At the individual level, the effects of ecosystem engineers on other plants often become more positive in stressful environments. In this study, we investigated whether the community-level effects of ecosystem engineers also become stronger in more stressful environments. Using comparative and experimental approaches, we assessed the ability of a native shrub (Ericameria ericoides) to act as an ecosystem engineer across a stress gradient in a coastal dune in northern California, USA. We found increased coarse organic matter and lower wind speeds within shrub patches. Growth of a dominant invasive grass (Bromus diandrus) was facilitated both by aboveground shrub biomass and by growing in soil taken from shrub patches. Experimental removal of shrubs negatively affected species most associated with shrubs and positively affected species most often found outside of shrubs. Counter to the stress-gradient hypothesis, the effects of shrubs on the physical environment and individual plant growth did not increase across the established stress gradient at this site. At the community level, shrub patches increased beta diversity, and contained greater rarified richness and exotic plant cover than shrub-free patches. Shrub effects on rarified richness increased with environmental stress, but effects on exotic cover and beta diversity did not. Our study provides evidence for the community-level effects of shrubs as ecosystem engineers in this system, but shows that these effects do not necessarily become stronger in more stressful environments.

opencc-zeroDec 2013View details →
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Data from: Correlation of native and exotic species richness: a global meta-analysis finds no invasion paradox across scales

Support for the "biotic resistance hypothesis," that species-rich communities are more successful at resisting invasion by exotic species than are species-poor communities, has long been debated. It has been argued that native-exotic richness relationships (NERR) are negative at small spatial scales and positive at large scales, but evidence for the role of spatial scale on NERR has been contradictory. However, no formal quantitative synthesis has previously examined whether NERR is scale-dependent across multiple studies, and previous studies on NERR have not distinguished spatial grain and extent, which may drive very different ecological processes. We used a global systematic review and hierarchical mixed-effects meta-analysis to provide a comprehensive quantitative assessment of the patterns of NERR over a range of spatial grain sizes and spatial extents, based on 204 individual cases of observational (non-experimental) NERRs from 101 publications. We show that NERR was indeed highly scale-dependent across studies and increased with the log of grain size. However, mean NERR was not negative at any grain size, although there was high heterogeneity at small grain sizes. We found no clear patterns of NERR across different spatial extents, suggesting that extent plays a less important role in determining NERR than does grain, although there was a complex interaction between extent and grain size. Almost all studies on NERR were conducted in North America, western Europe, and a few other regions, with little information on tropical or Arctic regions. We did find that NERR increased northward in temperate regions and also varied with longitude. We discuss possible explanations for the patterns we found, and caution that our results do not show that invasive species are benign or have no negative consequences for biodiversity preservation. This study represents the first global quantitative analysis of scale-based NERR and casts doubt on the existence of an "invasion paradox" of negative NERR at small scales and positive correlations at large scales in non-experimental studies.

opencc-zeroDec 2018View details →
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Data from: Origin matters: diversity affects the performance of alien invasive species but not of native species

At local scales, it has often been found that invasibility declines with increasing resident plant diversity. However, whether resident community diversity similarly resists invasion by alien versus native species is seldom compared. We examined this issue by invading constructed native plant assemblages that varied in species and functional richness with invasive alien or native Asteraceae species. Assemblages were also invaded with spotted knapweed, Centaurea stoebe, a native European Aster that has been previously used in diversity-invasibility experiments in North America. We also conducted a field survey to explore the generality of the patterns generated from our experimental study. Both experimental and observational work revealed that increasing diversity reduced the performance of alien but not native invaders. Centaurea stoebe invading its native community performed poorly regardless of resident diversity whereas in a parallel previously published study in North America, C. stoebe easily invaded low but not high diversity assemblages. Our results suggest that diversity is an attribute of resident communities that makes them more or less susceptible to invasion by novel invasive alien but not native plant species. 19 pages, 2 tables, 3 figures; Appendix

opencc-zeroDec 2014View details →
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Data from: Examining disease prevalence for species of conservation concern using non-invasive spatial capture-recapture techniques

1. Non-invasive techniques have long been used to estimate wildlife population abundance and density. However, recent technological breakthroughs have facilitated non-invasive estimation of the proportion of animal populations with certain diseases. Giraffes Giraffa camelopardalisare increasingly becoming recognized as a species of conservation concern with decreasing population trajectories across their range in Africa. 2. Diseases may be an important component impacting giraffe population declines, and the emerging 'Giraffe Skin Disease' (GSD), characterized by the appearance of wrinkled skin and alopecic lesions on the limbs, neck, and chest of infected giraffe, may hinder movement causing increased susceptibility to predation. 3. We examined the prevalence of GSD in Tanzania's Ruaha National Park over a 4-month period in 2015, using photographic capture–recapture surveys via road-based transects. We divided the study area into five circuitous survey units, each approximately 100 km in length ($\bar x$ = 99.22 km, SD = 3.72), and surveyed for giraffes for four months. From these surveys, we developed a database of spatially-explicit giraffe photographs. 4. We processed these photos for individual identification and fitted spatial capture–recapture models to predict the spatial configuration of giraffe abundance and GSD prevalence within the study area. 5. Our results indicated that &gt;86% of the giraffe population showed signs of GSD and that the disease was more prevalent in the northern and north-eastern portion of Ruaha National Park. 6. Synthesis and applications. Our research shows that data from non-invasive surveys can be used in spatial capture–recapture (SCR) models to estimate the proportion of a population affected by a visible disease. Researchers and conservationists can use SCR models to better examine the variation in parameters associated with these populations such as sex and age class, movement, and encounter rate, which may be linked to the prevalence of the disease, while incorporating broad spatial and temporal dimensions of the population in such areas. We discuss the implications of this research for conservation of threatened species with an emphasis on disease ecology and vulnerability to predations, and more broadly, for wildlife conservation.

opencc-zeroDec 2015View details →
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Data from: Parallels between two geographically and ecologically disparate cave invasions by the same species, Asellus aquaticus (Isopoda, Crustacea)

Caves are long-known examples of evolutionary replications where similar morphologies (troglomorphies) evolve independently as the result of strong natural selection of the extreme environment. Recently, this paradigm has been challenged based on observations that troglomorphies are inconsistent across taxa and different subterranean habitats. We investigated the degree of replicated phenotypic change in two independent cave invasions by the freshwater isopod Asellus aquaticus; the first in a sulphidic aquifer in Romania, the second in a sinking river in the Dinaric Karst in Slovenia. Both ancestral surface populations still live alongside the subterranean ones. Phylogenetic analyses show independence of the two colonization events, and microsatellite analysis shows no evidence of ongoing genetic exchange between surface and subterranean ecomorphs. The overall morphology has changed dramatically at both sites (50 of 62 morphometric traits). The amount of phenotypic change did not reflect differences in genetic diversity between the two ancestral populations. Multivariate analyses revealed divergent evolution in caves, not parallel or convergent as predicted by the current paradigm. Still, 18 traits changed in a parallel fashion, including eye and pigment loss and antennal elongation. These changes might be a consequence of darkness as the only common ecological feature, because Romanian caves are chemoautotrophic and rich in food, whereas Slovenian caves are not. Overall, these results show that morphologically alike surface populations can diverge after invading different subterranean habitats, and that only about one-third of all changing traits behave as troglomorphies in the traditional sense.

opencc-zeroDec 2014View details →
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Data from: Variation in growth and developmental responses to supraoptimal temperatures near latitudinal range limits of gypsy moth Lymantria dispar (L.), an expanding invasive species

Variation in thermal performance within and between populations provides the potential for adaptive responses to increasing temperatures associated with climate change. Organisms experiencing temperatures above their optimum on a thermal performance curve exhibit rapid declines in function and these supraoptimal temperatures can be a critical physiological component of range limits. The gypsy moth, Lymantria dispar (L.) (Lepidoptera: Erebidae), is one of the best-documented biological invasions and factors driving its spatial spread are of significant ecological and economic interest. The present study examines gypsy moth sourced from different latitudes across its North American range for sensitivity to high temperature in constant temperature growth chamber experiments. Supraoptimal temperatures result in higher mortality in northern populations compared with populations from the southern range extent (West Virginia and coastal plain of Virginia, U.S.A.). Sublethal effects of high temperature on traits associated with fitness, such as smaller pupal mass, are apparent in northern and West Virginia populations. Overall, the results indicate that populations near the southern limits of the range are less sensitive to high temperatures than northern populations from the established range. However, southern populations are lower performing overall, based on pupal mass and development time, relative to northern populations. This suggests that there may be a trade-off associated with decreased heat sensitivity in gypsy moth. Understanding how species adapt to thermal limits and possible fitness trade-offs of heat tolerance represents an important step toward predicting climatically driven changes in species ranges, which is a particularly critical consideration in conservation and invasion ecology.

opencc-zeroDec 2017View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record