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F I G U R E 4 in Biological information on a rare pelagic fish, black ruff Centrolophus niger, caught in Icelandic waters: Distribution, feeding, and otoliths
F I G U R E 4 Temperature profiles from the CTD probe at each station of the Icelandic part of the International Ecosystem Summer Survey of the Nordic Seas (IESSNS) where black ruff Centrolophus niger (Gmelin, 1789) were caught.
F I G U R E 1 in Global warming is projected to lead to increased freshwater growth potential and changes in pace of life in Atlantic salmon Salmo salar
F I G U R E 1 Location of electrofishing sites (green circles) and fish traps (red circles) in the Burrishoole catchment, Co. Mayo, Ireland.
F I G U R E 1 in High summer temperatures are associated with poorer performance of underyearling Atlantic salmon (Salmo salar) in upland streams
F I G U R E 1 (a) Locations of sampling sites (circles) in the river Conon catchment, Northern Scotland. The map depicts the area within the black box in the inset map. (b) Daily maximum temperatures recorded in each stream during the study period (points represent the daily highest temperature for the entire stream, so may be either from the upper or lower sampling sites). Red values indicate temperatures>23 C, considered stressful to Atlantic salmon, while yellow values indicate temperatures between 20 C and 23 C, and blue values indicate temperatures <20 C. (c) Density and (d) biomass of underyearling Atlantic salmon, Salmo salar (both on a natural logarithmic scale, ± standard error) in relation to duration of peak temperatures (degree hours above 23 C) at sites in the River Conon catchment (n = 63 sections sampled across six sites in 2 years, 589 fish). All sites had the same initial density and genetic composition of eggs. Temperature: 0–20, 20–23, and>23. Year and sampling position: 2020 Downstream, 2020 Upstream, 2021 Downstream, and 2021 Upstream. Stream: Blackwater, Rannoch, and Vaich.
Fig. 16. Rinhatiana gen. nov. and Tianarinha gen nov. A–K. Male gonocoxites and phallus with epandrium removed. A. R in New genera of stiletto flies endemic to Madagascar (Therevidae: Therevinae)
Fig. 16. Rinhatiana gen. nov. and Tianarinha gen nov. A–K. Male gonocoxites and phallus with epandrium removed. A. R. arctifestuca gen. et sp. nov. (CSCA), ventral view. B. Same, dorsal view. C. R. cracentis gen. et sp. nov. (CSCA), ventral view. D. Same, dorsal view. E. R. latifestuca gen. et sp. nov. (CSCA), ventral view. F. Same, dorsal view. G. T. goodmani gen. et sp. nov. (CSCA), ventral view. H. Same, dorsal view. I. T. micet gen. et sp. nov. (CSCA), ventral view. J. Same, dorsal view. K. R. distincta (Lyneborg, 1976) comb. nov. (CSCA), ventral view. L–P. Sternite 8. L. R. arctifestuca gen. et sp. nov. (CSCA) (with tergite 8). M. R. cracentis gen. et sp. nov. N. T. goodmani gen. et sp. nov. (CSCA). O. R. latifestuca gen. et sp. nov. (CSCA). P. T. micet gen. et sp. nov. (CSCA). Scale bars = 0.2 mm.
РИС. 1. Схематичное иЗображение глаЗа наЗемного лёгочного моллюска. СокраЩениЯ: c – роговица; ec – глаЗнаЯ капсула; r – сетчатка; p – краЯ Зрачка; l – хрусталик, окруженный слоем стекловидного тела; L abs – абсолютное расстоЯние между Зрачком и наружной поверхностью хрусталика; D l – продольный диаметр хрусталика; А – абсолютный диаметр Зрачabs ка; D – поперечный диаметр глаЗа. FIG. 1. Schematic drawing of the eye of a terrestrial pulmonate mollusk. Abbreviation: c – cornea; ec – eye capsule; r – retina; p – edges of the pupil; l – lens, surrounded by a layer of the vitreous body; L abs – the absolute distance between the pupil and the outer surface of the lens; D l – the longitudinal diameter of the lens; А abs – the absolute diameter of the pupil; D e – the transverse diameter of the eye. in Зрачок камерных глаЗ наЗемных брюхоногих моллюсков (Heterobranchia, Stylommatophora)
РИС. 1. Схематичное иЗображение глаЗа наЗемного лёгочного моллюска. СокраЩениЯ: c – роговица; ec – глаЗнаЯ капсула; r – сетчатка; p – краЯ Зрачка; l – хрусталик, окруженный слоем стекловидного тела; L abs – абсолютное расстоЯние между Зрачком и наружной поверхностью хрусталика; D l – продольный диаметр хрусталика; А – абсолютный диаметр Зрачabs ка; D – поперечный диаметр глаЗа. FIG. 1. Schematic drawing of the eye of a terrestrial pulmonate mollusk. Abbreviation: c – cornea; ec – eye capsule; r – retina; p – edges of the pupil; l – lens, surrounded by a layer of the vitreous body; L abs – the absolute distance between the pupil and the outer surface of the lens; D l – the longitudinal diameter of the lens; А abs – the absolute diameter of the pupil; D e – the transverse diameter of the eye.
РИС. 2. ГлаЗ Monachoides incarnata. A. ФотографиЯ препарата иЗолированного глаЗа. B. ФотографиЯ продольного полутонкого среЗа глаЗа. СокраЩениЯ: c – роговица; ec – глаЗнаЯ капсула; r – сетчатка; p – краЯ Зрачка; l – хрусталик, окруженный слоем стекловидного тела. FIG. 2. The eye of Monachoides incarnata. A. Photograph of the preparation of the isolated eye. B. Photograph of the longitudinal semithin section of the eye. Abbreviation: c – cornea; ec – eye capsule; r – retina; p – edges of the pupil; l – lens, surrounded by a layer of the vitreous body. in Зрачок камерных глаЗ наЗемных брюхоногих моллюсков (Heterobranchia, Stylommatophora)
РИС. 2. ГлаЗ Monachoides incarnata. A. ФотографиЯ препарата иЗолированного глаЗа. B. ФотографиЯ продольного полутонкого среЗа глаЗа. СокраЩениЯ: c – роговица; ec – глаЗнаЯ капсула; r – сетчатка; p – краЯ Зрачка; l – хрусталик, окруженный слоем стекловидного тела. FIG. 2. The eye of Monachoides incarnata. A. Photograph of the preparation of the isolated eye. B. Photograph of the longitudinal semithin section of the eye. Abbreviation: c – cornea; ec – eye capsule; r – retina; p – edges of the pupil; l – lens, surrounded by a layer of the vitreous body.
Apathy, motivation, and physical activity behavior: Material, data and R code
<p>This new release includes updates to the code and additional material following the peer review process conducted by Communications in Kinesiology.</p>
Datasets and R codes used for the analyses in "Seasonal variation in home range size of White-Backed Woodpeckers"
<p><strong>Abstract</strong></p> <p>Knowing a species’ area requirements is fundamental for species conservation. For the nominate subspecies of the White-backed Woodpecker<em> Dendrocopos leucotos</em>, a species of high conservation concern in Europe, estimates of the seasonal and year-round area requirements based on telemetry are missing. In the present study, we radio-tracked adult White-backed Woodpeckers in Central Europe and investigated bi-monthly home range sizes based on three home range estimators in relation to season, sex, body weight, and year. Home range size of 49 radio-tracked individuals varied depending on the used home range estimator, with minimum convex polygons (MCP) and autocorrelated kernel density estimation (AKDE) producing 1.6 – 1.8 and 2 – 3.3 times larger seasonal home ranges than traditional kernel density estimation (KDE). Moreover, home range sizes varied between seasons. Home ranges were smallest in February/March (predicted median home range sizes ranged from 35 ha with KDE to 88 ha with AKDE) and April/May (KDE: 30 ha, AKDE: 55 ha) and larger during the rest of the year (KDE: 48 – 67 ha, AKDE: 136 – 184 ha). The mean home range size of six individuals tracked in all seasons (calculated with all locations per individual) was 116 ha with KDE, 304 ha with MCP and 350 ha with AKDE. Our results highlight the importance of considering the full annual cycle when addressing area requirements of White-backed Woodpeckers and likely also of other species. Furthermore, our study shows that using multiple methods for home range estimation may be useful to obtain results that are both comparable with those of other studies and capture the range in which the true home range size is likely to be. For the conservation of the White-backed Woodpecker, we conclude that at least 116 to 350 ha of forest should be present for a pair.</p>
Example data for microclimf: Fast above, below or within canopy gridded microclimate modelling with R
<p>runmicrobig.zip - example data required to run function runmicro_big in package vignette</p> <p>Package available: https://github.com/ilyamaclean/microclimf</p>
Supplementary datasets, data analysis code, and R tutorials for: Phylogenetic analysis of adaptation in comparative physiology and biomechanics: overview and a case study of thermal physiology in treefrogs
<p>Comparative phylogenetic studies of adaptation are uncommon in biomechanics and physiology. Such studies require collecting data from many species, a challenge when data collection is experimentally intensive. Moreover, researchers struggle to employ the most biologically appropriate phylogenetic tools for identifying adaptive evolution. Here, we detail an established but greatly underutilized phylogenetic comparative framework—the Ornstein-Uhlenbeck process—that explicitly models long-term adaptation. We discuss challenges in implementing and interpreting the model, and we outline potential solutions. We demonstrate use of the model through studying the evolution of thermal physiology in treefrogs. Frogs of the family Hylidae have twice colonized the temperate zone from the tropics, and such colonization likely involved a fundamental change in physiology due to colder and more seasonal temperatures. However, which traits changed to allow colonization is unclear. We measured cold-temperature tolerance and characterized thermal performance curves in jumping for twelve species of treefrogs distributed from the Neotropics to temperate North America. We then conducted phylogenetic comparative analyses to examine how tolerances and performance curves evolved and to test whether that evolution was adaptive. We found that tolerance to low temperatures increased with the transition to the temperate zone. In contrast, jumping well at colder temperatures was unrelated to biogeography and thus did not adapt during dispersal. Overall, our paper shows how comparative phylogenetic methods can be leveraged in biomechanics and physiology to test the evolutionary drivers of variation among species.</p>
Affective, physiological, and attention restoration at a wooden desk: A pilot study (Datasets and R analysis code)
<p>This entry contains datasets and R processing and analysis code for the article <em>Affective, physiological, and attention restoration at a wooden desk: A pilot study.</em><br> <br> The analysis primarily investigates how people respond to the Mental Arithmetic Task (MAT) in terms of their affective states and physiological arousal, and how their cognitive performance changes between two task administrations. The analysis also checks whether affective, physiological, and cognitive responses differ between settings furnished with or without wood. We base our analysis on self-reported affective states, captured physiological (electrodermal and cardiovascular) activity, and results on the cognitive task (i.e., MAT).</p>
6MSM_CFTR_MD_EQUILIBRATED_MISSING_R_DOMAIN_FRAGMENT_MODELLED
<p>A protein structure based on PDB ID 6MSM with the unidentified fragment filled in based on results from molecular dynamics investigations and comparisons with alphafold.</p> <p>In addition to the molecular dynamics workflow used to simulate it.</p>
FI GU R E 3 Maximum likelihood phylogenetic tree of the Hyalospheniformes with a focus on Apodera, Alocodera, and Padaungiella based on COI gene sequences. Bootstrap values (bs) and Bayesian posterior probabilities (p.p.) are indicated respectively between branches. COI sequences from genera other than Apodera were retrieved from GenBank in Superficially described and ignored for 92 years, rediscovered and emended: Apodera angatakere (Amoebozoa: Arcellinida: Hyalospheniformes) is a new flagship testate amoeba taxon from Aotearoa (New Zealand)
FI GU R E 3 Maximum likelihood phylogenetic tree of the Hyalospheniformes with a focus on Apodera, Alocodera, and Padaungiella based on COI gene sequences. Bootstrap values (bs) and Bayesian posterior probabilities (p.p.) are indicated respectively between branches. COI sequences from genera other than Apodera were retrieved from GenBank
nal; E', F', internal, G'-J', Pal. 1341 (peripheral 8); G', H', external; I', J', internal; K'-N', Pal. 1343 (peripheral 9); K', L', external; M', N', internal; O'-R', Pal. 1345 (peripheral 10); O', P', external; Q', R', internal; S'-V', Pal. 1348 (peripheral 11); S', T', external; U', V', internal views; W', reconstruction of carapace Thick lines correspond to scute sulci, dotted lines denote plate sutures, and oblique lines indicate missing plate portions. Abbreviations: Ce, cervical; co, costal; Ma, marginal; ne, neural; nu, nuchal; per, peripheral; Pl, pleural; py, pygal; sp, suprapygal; Spr, supracaudal; Ve, vertebral. Scale bars: A-V', 1 cm; W', 2.5 cm. in Fossil turtles from the early Miocene localities of Mokrá-Quarry (Burdigalian, MN4), South Moravian Region, Czech Republic
nal; E', F', internal, G'-J', Pal. 1341 (peripheral 8); G', H', external; I', J', internal; K'-N', Pal. 1343 (peripheral 9); K', L', external; M', N', internal; O'-R', Pal. 1345 (peripheral 10); O', P', external; Q', R', internal; S'-V', Pal. 1348 (peripheral 11); S', T', external; U', V', internal views; W', reconstruction of carapace Thick lines correspond to scute sulci, dotted lines denote plate sutures, and oblique lines indicate missing plate portions. Abbreviations: Ce, cervical; co, costal; Ma, marginal; ne, neural; nu, nuchal; per, peripheral; Pl, pleural; py, pygal; sp, suprapygal; Spr, supracaudal; Ve, vertebral. Scale bars: A-V', 1 cm; W', 2.5 cm.
sal; W, visceral; X-Z, Pal. 1308 (costal 5); X, Y, dorsal; Z, visceral; A'-C', Pal. 1309 (costal 6); A', B', dorsal; C', visceral; D'-F', Pal. 1310 (costal 8); D', E', dorsal; F', visceral; G'-J', Pal. 1312 (peripheral 1); G', H', dorsal; I', J', visceral; K'-N', Pal. 1313 (peripheral 7); K', L', dorsal; M', N', visceral; O'-R', Pal. 1314 (peripheral 8); O', P', dorsal; Q', R', visceral views; S', reconstruction of carapace. Thick lines indicate to scute sulci, dotted lines sutures and oblique lines denote missing plate portions. Abbreviations: Ce, cervical; co, costal; Ma, marginal; ne, neural; nu, nuchal; per, peripheral; Pl, pleural; py, pygal; sp, suprapygal; Ve, vertebral. Scale bars: 1 cm. in Fossil turtles from the early Miocene localities of Mokrá-Quarry (Burdigalian, MN4), South Moravian Region, Czech Republic
sal; W, visceral; X-Z, Pal. 1308 (costal 5); X, Y, dorsal; Z, visceral; A'-C', Pal. 1309 (costal 6); A', B', dorsal; C', visceral; D'-F', Pal. 1310 (costal 8); D', E', dorsal; F', visceral; G'-J', Pal. 1312 (peripheral 1); G', H', dorsal; I', J', visceral; K'-N', Pal. 1313 (peripheral 7); K', L', dorsal; M', N', visceral; O'-R', Pal. 1314 (peripheral 8); O', P', dorsal; Q', R', visceral views; S', reconstruction of carapace. Thick lines indicate to scute sulci, dotted lines sutures and oblique lines denote missing plate portions. Abbreviations: Ce, cervical; co, costal; Ma, marginal; ne, neural; nu, nuchal; per, peripheral; Pl, pleural; py, pygal; sp, suprapygal; Ve, vertebral. Scale bars: 1 cm.
Dataset for the tutorial of supeRbaits R package
<p>Dataset for the tutorial of the R package "supeRbaits" (https://github.com/BelenJM/supeRbaits)</p>
Fig. 2 in Pabstiella pseudotrifida L. Kollmann & D. R. Couto (Orchidaceae), a new species from Espírito Santo, Brazil
Fig. 2. – Distribution of Pabstiella pseudotriFida L. Kollmann & D. R. Couto (triangles) in Southern Espírito Santo, Brazil.
Fig. 1. – Pabstiella pseudotriFida L. Kollmann & D. R. Couto. A in Pabstiella pseudotrifida L. Kollmann & D. R. Couto (Orchidaceae), a new species from Espírito Santo, Brazil
Fig. 1. – Pabstiella pseudotriFida L. Kollmann & D. R. Couto. A. Habit; B. Flower (side view); C. Dorsal sepal; D. Lateral sepals; E-F. Petals; G. Lip (spread); H. Lip (lateral view); I. Column (apical portion spread and from below); J. Column and ovary (lateral view); K. Anther (1. ventral face, 2. dorsal face). [D. R. Couto 229, MBML] [Drawn by L. Kollmann]
PostConsumer r-PET Trials from Bottle&Tray Mix for Foam Board Production
<p>For Armacell, the challenges related to recycling PET tray material are the low intrinsic viscosity (IV), the frequent use of multilayer sheets in packaging trays and other contaminations coming from the mixed plastic household waste collection.</p> <p>To achieve the correct mechanical properties for the PET foam boards, it is essential to limit raw material variations and to master material melt viscosity and pressure in the extruder. With a combination of adapted processing parameters, as well as new melt modifier formulation, it is possible to produce foam boards from tray-PET that have a comparable quality to foam boards produced from bottle PET.</p> <p>Attached, different properties and results from the tested postconsumer material and the foam board produced are presented sown to the H2020 PlastiCircle Project.</p>
Figure 7 in On R. Kinzelbach's euscorpiid specimens from Turkey deposited in the Naturhistorisches Museum Mainz, Germany (Scorpiones: Euscorpiidae)
Figure 7. Distribution of Alpiscorpius phrygius (triangles), Euscorpius avcii (circles) and E. koci (squares). Black icons indicate type localities; blue icons, records of Kinzelbach (1982); red triangles, all published records according to Tropea et al. (2015); red circles, records of Tropea et al. (2012); green circles, records of Parmakelis et al. (2013); red squares, records of Tropea & Yağmur (2015), green squares, records of Şenl & Karataş (2021).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.