Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
423
datasets available to search
ShareScore release 0.9.0
Dataset results
423 results for “t haplotype”
Ancestral β-globin gene haplotypes modify β-thalassemia severity in a mouse model [bone marrow, spleen]
GEO Series GSE260901. Mus musculus. 40 samples. Type: Expression profiling by high throughput sequencing.
Gene expression data of mRNA from adrenal gland sample of pig breed German Landrace with different coping behavior haplotype
GEO Series GSE109153. Sus scrofa. 20 samples. Type: Expression profiling by array.
Expression data from MS individuals homozygous for IL7R haplotypes
GEO Series GSE37584. Homo sapiens. 14 samples. Type: Expression profiling by array.
Concurrent whole-genome haplotyping and copy number profiling of single cells (Affymetrix)
GEO Series GSE60907. Homo sapiens. 18 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Mitochondrial haplotype dependant T cell activity
GEO Series GSE276714. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Gene expression data of mRNA from hypothalamus sample of pig breed German Landrace with different coping behavior haplotype
GEO Series GSE109154. Sus scrofa. 20 samples. Type: Expression profiling by array.
Characterization of C9orf72 haplotypes to evaluate the effects of normal and pathological variations on its expression and splicing
GEO Series GSE162943. Homo sapiens. 11 samples. Type: Other.
Gene expression data of mRNA from hippocampus sample of pig breed German Landrace with different coping behavior haplotype
GEO Series GSE125079. Sus scrofa. 20 samples. Type: Expression profiling by array.
Definitive haplotypes from a collection of complete hydatidiform moles (CHMs)
GEO Series GSE12713. Homo sapiens. 200 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Genotype, haplotype and copy number variation in worldwide human populations.
GEO Series GSE10331. Homo sapiens. 485 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
The MLH1 c.-27C>A and c.85G>T variants are borne on a European ancestral haplotype which underlies an autosomal dominant form of MLH1 epimutation.
GEO Series GSE45149. Homo sapiens. 5 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
APPENDIX Individuals included in the genetic and/or skull morphology analyses are presented with source and locality information (reference to sites in Fig. 1 are given in parentheses when available). Voucher numbers are provided for individuals that were collected: AMNH — American Museum of Natural History, New York, NY, USA, BMNH — Natural History Museum, London, UK, FMNH — Field Museum, Chicago, IL, USA, HZM — Harrison Zoological Museum, Kent, UK, MCZ — Museum of Comparative Zoology, Harvard, MA, USA, MZB — Muzeum Zoologicum Bogoriense, Bogor, Indonesia, RMNH — National Museum of Natural History Naturalis, Leiden, Netherlands, SEN — Senckenberg Museum, Frankfurt, Germany, TK — tissue collection and TTU — specimen numbers; Texas Tech. University, Lubbock, TX, USA, and USNM — Smithsonian Institute, Washington D.C., USA. All specimens from peninsular Malaysia with THK or MBCRU field numbers were collected by A. Zubaid, and the specimens or duplicate wing punches were deposited at UKM (Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia). The original taxonomy of type specimens (type) are listed. Haplotypes (Hap) are given for individuals of H. bicolor (=H. bicolor-131) and H. kunzi (=H. bicolor-142). GenBank accession numbers are given for one representative of each unique haplotype in A new species in the Hipposideros bicolor group (Chiroptera: Hipposideridae) from Peninsular Malaysia
APPENDIX Individuals included in the genetic and/or skull morphology analyses are presented with source and locality information (reference to sites in Fig. 1 are given in parentheses when available). Voucher numbers are provided for individuals that were collected: AMNH — American Museum of Natural History, New York, NY, USA, BMNH — Natural History Museum, London, UK, FMNH — Field Museum, Chicago, IL, USA, HZM — Harrison Zoological Museum, Kent, UK, MCZ — Museum of Comparative Zoology, Harvard, MA, USA, MZB — Muzeum Zoologicum Bogoriense, Bogor, Indonesia, RMNH — National Museum of Natural History Naturalis, Leiden, Netherlands, SEN — Senckenberg Museum, Frankfurt, Germany, TK — tissue collection and TTU — specimen numbers; Texas Tech. University, Lubbock, TX, USA, and USNM — Smithsonian Institute, Washington D.C., USA. All specimens from peninsular Malaysia with THK or MBCRU field numbers were collected by A. Zubaid, and the specimens or duplicate wing punches were deposited at UKM (Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia). The original taxonomy of type specimens (type) are listed. Haplotypes (Hap) are given for individuals of H. bicolor (=H. bicolor-131) and H. kunzi (=H. bicolor-142). GenBank accession numbers are given for one representative of each unique haplotype
List of specimens, species codes, localities (NI, Northern Iberia; CI, Central Iberia; SI, Southern Iberia; AU, Austria; BL, Bulgaria; CR, Croatia; CZ, Czech Republic; DK, Denmark; FR, France; GE, Germany; GR, Greece; HN, Hungary; SD, Sweden; SW, Switzerland; TK, Turkey), haplotypes codes for species and GenBank accession numbers of the samples used for an overall molecular screening of bat cryptic diversity in Iberia using a mtDNA cytb fragment in The Iberian contribution to cryptic diversity in European bats
List of specimens, species codes, localities (NI, Northern Iberia; CI, Central Iberia; SI, Southern Iberia; AU, Austria; BL, Bulgaria; CR, Croatia; CZ, Czech Republic; DK, Denmark; FR, France; GE, Germany; GR, Greece; HN, Hungary; SD, Sweden; SW, Switzerland; TK, Turkey), haplotypes codes for species and GenBank accession numbers of the samples used for an overall molecular screening of bat cryptic diversity in Iberia using a mtDNA cytb fragment
The haplotype-resolved T2T genome of teinturier cultivar Yan73 reveals the genetic basis of anthocyanin biosynthesis in grapes
<p>The cultivar "Yan73' was used for assembling the first T2T genome of teinturier grapes by applying the PacBio Sequel Ⅱ platform, Hi-C technology and ultralong Oxford Nanoore Technologies (ONT) . Two haplotypes genomes were assembled, with the sizes of 501Mb and 493.38 Mb. The Yan73' sequencing on the PacBig Sequel Ⅱ platform generated a total of 29.41 Gb HiFi reads and two haplotypes were finally assembled.</p><p>We employed K-mers to assess genomic heterozygosity, estimating it at 1.35%. BUSCO was used to evaluate genomic completeness, with approximately 98.4% completeness for Yan73 haplotype 1 and 98.1% for Yan73 haplotype 2 in terms of core conserved plant genes within the genome assembly. The first genome of the teinturier grape Yan73 was successfully assembled, identifying 334,930 and 34,919 genes in haplotype 1 and haplotype 2 genomes, respectively.</p><p>The Yan73hap1 genome assembly: Yan73hap1.fa</p><p>The Yan73hap2 genome assembly: Yan73hap2.fa</p><p>The Yan73hap1 gene annotation: Yan73hap1.gff3</p><p>The Yan73hap2 gene annotation: Yan73hap2.gff3</p><p>The Yan73hap1 TE annotation : Yan73hap1.TE.gff</p><p>The Yan73hap2 TE annotation : Yan73hap2.TE.gff</p>
Fig. 5 a 95 in Using haplotype networks, estimation of gene flow and phenotypic characters to understand species delimitation in fungi of a predominantly Antarctic Usnea group (Ascomycota, Parmeliaceae)
Fig. 5 a 95% probability haplotype network for the U. sphacelata group based on a combined dataset of ribosomal IGS and ITS and protein-coding RPB1 sequences. The 3-step nesting level is shown. Haplotypes are represented by colored circles according to the sample localities. The circle size is proportional to the number of sequences sharing a haplotype, except for haplotype H5 comprising too many
Fig. 7 Haplotype network for 20 in New insights into the phylogeny and taxonomy of Chinese species of Gagea (Liliaceae)-speciation through hybridization
Fig. 7 Haplotype network for 20 cpDNA haplotypes (psbA- trnH IGS+trnL-trnF IGS) including 33 sequences of representatives of Gagea sect. Minimae: G. confusa (con), G. davlianidzeae (dav), G. filiformis (fil), G. granulosa (gran), G. minima (min), and G. nigra (nig, for further details, see Appendix 1 and Table 2). Circle size corresponds to the number of taxa possessing the haplotype. Empty circles refer to missing intermediates not found in the analyzed sequences
Fig. 3 Haplotype network derived from the Cpunl-1 in Genetic and morphological divergence among Gravel Bank Grasshoppers, Chorthippus pullus (Acrididae), from contrasting environments
Fig. 3 Haplotype network derived from the Cpunl-1 data set; alleles coded as in Table 2. Pie diameters proportional to number of individuals carrying that particular haplotype (see inlet at bottom right); numbers next to pies or pie slices indicate how many individuals carried that particular haplotype. Shading of pies and slices (see inlet at top right) reflects frac- tions of haplotypes contributed by the different populations; Bavarian and eastern German (Brandenburg + Saxony) populations presented as two pools based on pairwise FST values (no significant differentiation detected within either region). Solid dots represent missing haplotypes; dashed lines indicate that multiple connections among haplotypes are possible but not favored
Fig. 8 The haplotype network for Ceratozamia species. A CyAG. B matK. C in Species delimitation in Ceratozamia (Zamiaceae) from Southwestern Mexico, in light of reproductive and climatic diversification
Fig. 8 The haplotype network for Ceratozamia species. A CyAG. B matK. C ITS region. The area of the circles is proportional to haplotype frequency
Amylase Segments, Haplotypes, liftoff Gene Annotations and OrthogonalValidation-MoleculeSupport
Open the record for dataset details and reuse information.
FIGURE 2 in High haplotype diversity in a microendemic Malagasy gecko species, Lygodactylus mirabilis (Pasteur, 1962)
FIGURE 2: Three-dimensional plot of pairwise uncorrected p-distances for the cytochrome b (x-axis) and 16S rRNA (yaxis) markers. The number of observation (z-axis) indicates the number of times that a defined combination of cytochrome b – 16S distances has been observed.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.