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695
datasets available to search
ShareScore release 0.7.1
Dataset results
695 results for “topologies”
Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics [human snRNA-seq]
GEO Series GSE264393. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Modular regulation of Myc transcription by a topologically defined enhancer cluster dedicated to pluripotency and early embryonic expression
GEO Series GSE222299. Mus musculus. 9 samples. Type: Other.
Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics [stereo-seq]
GEO Series GSE264321. Mus musculus. 5 samples. Type: Other.
Setdb1 regulates Cohesin at H3K9me3-independent topological domains [ChIP-Seq]
GEO Series GSE123244. Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Stage-specific dynamic reorganization of genome topology shapes transcriptional neighborhoods in developing human retinal organoids
GEO Series GSE229682. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Argonaute2 and LaminB modulate gene expression by controlling chromatin topology (ChIP-seq)
GEO Series GSE101365. Drosophila melanogaster. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
GEO Series GSE33664. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Stage-specific dynamic reorganization of genome topology shapes transcriptional neighborhoods in developing human retinal organoids
GEO Series GSE229683. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing; Other.
Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs
GEO Series GSE107447. Homo sapiens. 100 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
Stag1 and Stag2 regulate cell fate decisions in hematopoiesis through non-redundant topological control
GEO Series GSE135031. Mus musculus. 81 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
The genome organization of Neurospora crassa at high-resolution uncovers principles of fungal chromosome topology
GEO Series GSE173593. Neurospora crassa. 10 samples. Type: Other.
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth
GEO Series GSE218385. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
High-resolution genome topology of human retina uncovers super enhancer-promoter interactions at tissue-specific and multifactorial disease loci [Hi-C]
GEO Series GSE202471. Homo sapiens. 5 samples. Type: Other.
HMGB1 as a rheostat of chromatin topology and RNA homeostasis on the path to senescence [sCLIP]
GEO Series GSE146047. Homo sapiens. 6 samples. Type: Other; Expression profiling by high throughput sequencing.
CTCF regulates hepatitis B virus cccDNA chromatin topology
GEO Series GSE249280. Homo sapiens. 21 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling [HiC]
GEO Series GSE120751. Drosophila virilis; Drosophila melanogaster; Drosophila busckii. 5 samples. Type: Other; Third-party reanalysis.
CTCF regulates hepatitis B virus cccDNA chromatin topology [ATAC-seq]
GEO Series GSE248738. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
In-situ cell-type specific chromatin topologies in the brain revealed by genome architecture mapping [ATAC-seq]
GEO Series GSE174024. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Alveolar epithelial progenitor cells drive lung regeneration via dynamic changes in chromatin topology modulated by lineage-specific Nkx2-1 activity
GEO Series GSE215824. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Nascent Polypeptide Domain Topology and Elongation Rate Direct the Cotranslational Hierarchy of Hsp70 and TRiC/CCT
GEO Series GSE114882. Saccharomyces cerevisiae. 22 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.