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4,144 results for “ITS barcode”
FIGURE 5 in Eucosma subvittana (Staudinger 1892) stat. rev., a Mediterranean species resurrected by DNA barcodes and morphology (Lepidoptera, Tortricidae)
FIGURE 5. Unrooted Neighbor-Joining tree of Eucosma spp. (Kimura 2-parameter, built with MEGA7 (Kumar et al. 2016); Source: DNA Barcode data from BOLD (Barcode of Life Database; Ratnasingham 2018).
Fig. 4 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 4. Light micrographs showing overviews and details of (A–I) male holotype, NHMD-920097, and (J) female paratype, NHMD-920098, of Echinoderes abeli sp. nov. from Islas Marias, Mexico. (A) Ventral overview. (B) Segments 1 to 4, ventral view. (C) Segments 1 to 4, dorsal view. (D) Segments 4 to 6, ventral view. (E) Segment 5 to 7, dorsal view. (F) Segments 7 to 10, ventral view. (G) Segments 7 to 8, dorsal view. (H) Detail of segments 10 to 11, ventral view, showing male sexual dimorphism. (I) Detail of segments 10 to 11, dorsal view, showing male sexual dimorphism. (J) Segments 10 to 11, dorsal view, showing female sexual dimorphism. Abbreviations: ldt, laterodorsal tube; ltas, lateral terminal accessory spine; lts, lateral terminal spine; lvs, lateroventral spine; lvt, lateroventral tube; mdgco1, middorsal glandular cell outlet type 1; mds, middorsal spine; pdgco1, paradorsal glandular cell outlet type 1; pe, penile spine; pl placid; pr, protuberance; sdgco2, subdorsal glandular cell outlet type 2; sdss, subdorsal sensory spots; trp, trichoscalid plate. Digits after abbreviations in lvs, lvt and mds refer to segment number.
Fig. 8 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 8. Scanning electron micrographs showing overviews and details of Echinoderes wilberti sp. nov. (A) Ventral overview. (B) Segment 1 to 3, ventral view. (C) Segment 4 to 6, ventral view. (D) Segment 8, ventral view. (E) Segments 9 to 10, ventral view. (F) Segment 11, ventral view. (G) Segments 10 to 11, ventral view. (H) Dorsal overview. (I) Segments 1 to 4, dorsal view. (J) Segments 6 to 10, dorsal view. (K) Segments 10 to 11, dorsal view, showing male sexual dimorphism. (L) Segments 10 to 11, dorsal view, showing female sexual dimorphism; inset shows close-up of laterodorsal tube. Abbreviations: lat, lateral accessory tube; ldss, laterodorsal sensory spot; ldt, laterodorsal tube; ltas, lateral terminal accessory spine; lvs, lateroventral spine; lvt, lateroventral tube; mlss, midlateral sensory spot; pe, penile spine; pl, placid; sdss, subdorsal sensory spot; ste, sternal extension; te, tergal extension; vlss, ventrolateral sensory spot; vmss, ventromedial sensory spot. Digits after abbreviations lvs and lvt refer to segment number.
Fig. 7 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 7. Light micrographs showing overviews and details of (A–G) female holotype, NHMD-1176454, female paratype (H–I) NHMD-1176456, and (J) male paratype, NHMD-1176455, of Echinoderes wilberti sp. nov. from Xcalak, Quintana Roo, Mexico. (A) Ventral overview. (B) Segments 1 to 2, ventral view. (C) Segments 1 to 2, dorsal view. (D) Segments 3 to 5, ventral view. (E) Segment 3 to 5, dorsal view. (F) Segments 6 to 8, ventral view. (G) Segments 6 to 8, dorsal view. (H) Segments 9 to 11, ventral view. (I) Segments 9 to 11, dorsal view, showing female sexual dimorphism. (J) Segments 10 to 11, dorsal view, showing male sexual dimorphism. Abbreviations: lat, lateral accessory tube, ltas, lateral terminal accessory spine; lts, lateral terminal spine; lvs, lateroventral spine; lvt, lateroventral tube; mdgco1, middorsal glandular cell outlet type 1; pdgco1, paradorsal glandular cell outlet type 1; pe, penile spine; pl placid; pvb, paraventral bristles; sdt, subdorsal tube; ste, sternal extensions; te, tergal extensions; trp, trichoscalid plate; vmgco1, ventromedial glandular cell outlet type 1. Digits after abbreviations lvs and lvt refer to segment number.
Fig. 2 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 2. Line art illustrations of Echinoderes abeli sp. nov. (A) Male, dorsal view. (B) Male, ventral view. (C) Segments 10 to 11 in female, dorsal view. (D) Segments 10 to 11 in female, ventral view. Abbreviations: ldss, laterodorsal sensory spot; ldt, laterodorsal tube; ltas, lateral terminal accessory spine; lts, lateral terminal spine; lvgco1, lateroventral glandular cell outlet type 1; lvs, lateroventral spine; lvt, lateroventral tube; mdgco1, middorsal glandular cell outlet type 1; mds, middorsal spine; mlt, midlateral tube; pdgco1, paradorsal glandular cell outlet type 1; pdss, paradorsal sensory spot; pe, penile spines; pr, protuberance; pvgco1, paraventral glandular cell outlet type 1; sdgco2, subdorsal glandular cell outlet type 2; sdss, subdorsal sensory spot; si, sieve plate; slss, sublateral sensory spot; slt, sublateral tube; vlss, ventrolateral sensory spot; vmgco1, ventromedial glandular cell outlet type 1; vmss, ventromedial sensory spot.
FIGURE 14. A in A turbo-taxonomic study of Thai Aleiodes (Aleiodes) and Aleiodes (Arcaleiodes) (Hymenoptera: Braconidae: Rogadinae) based largely on COI barcoded specimens, with rapid descriptions of 179 new species
FIGURE 14. A. anguaae sp. nov. A, habitus; B, face; C, head, lateral view; D, head and mesosoma, dorsal view; E, mesosoma, lateral view; F, propodeum and 1st tergite, dorsal view; G, metasoma.
Figure 1 in Cytochrome c oxidase subunit I barcode species delineation methods imply critically underestimated diversity in 'common' Hermeuptychia butterflies (Lepidoptera: Nymphalidae: Satyrinae)
Figure 1. Distribution map of barcoded Hermeuptychia specimens. White dots indicate localities where previously published specimens were collected. Black dots indicate new localities of specimens examined in this study. Top-right inset shows a magnified view of Ecuador, which was the source for the majority of samples. Figured butterflies are Hermeuptychia species (top, from Ecuador, Loja) and Hermeuptychia clara (bottom, from Ecuador, Zamora-Chinchipe).
FIGURE 19. Mapped COI gene tree. COI barcode tree from Fig. 18 visualized against a in Thirteen new species of Chilecicada Sanborn, 2014 (Hemiptera: Auchenorrhyncha: Cicadidae: Tibicininae) expand the highly endemic cicada fauna of Chile
FIGURE 19. Mapped COI gene tree. COI barcode tree from Fig. 18 visualized against a map of specimen localities using web application TreeToM (See methods). Colors represent described species.
FIGURES 75–78 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 75–78. Type localities of Diamesa moubayedi sp. nov. (75), Diamesa zagrosica sp. nov. (76), D. steinboecki Goetghebuer (77) and D. praecipua Saether et Willassen (78). 75, glacial karstic spring, Sannyn Mount, alt. 2000 m a. sea l., Central Lebanon (photo by J. Moubayed); 76, Dare Daei River, Zagros Mountains, alt. 2244 m a. sea l., Lorestan Province, Iran (photo by D.M. Palatov); 77, Muttbach Stream, Valais Canton, Swiss Alps (photo by Jean–Louis Lods); 78, Rishi Ganga River, right tributary of the Alaknanda River near town of Badrinath, alt. 3128 m a. s. l., Himalayas, India (photo by D.M. Palatov).
FIGURES 1–8 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of new species. I. Subgroups steinboecki and longipes
FIGURES 1–8. Diamesa dragani sp. nov., male. 1, head; 2, antenna; 3, tergite IX; 4, hypopygium in dorsal view; 5, gonocoxite and gonostylus; 6, apex of gonostylus; 7, anal point in lateral view; 8, transverse sternapodeme, phallapodeme and aedeagal lobe. ATB—anterolateral anal tergal bands, MTB—median anal tergal band, PTB—posterolateral anal tergal band.
Figure 8 in DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches
Figure 8. Diagram of the morpho-molecular evolution of the family Clevelandellidae based on the present phylogenetic analyses. Molecular diagnostic characters are displayed for each marker in two rows: the upper row refers to the group in question (i.e. query group) and the lower row to the reference group, which includes all remaining clevelandellids and nyctotherids. Numbers correspond to the position of characters in the reference alignments. AZM, adoral zone of membranelles; MA, macronucleus; PM, paroral membrane.
FIGURES 8–11. 8. Drift net for collecting stoneflies. 9–11 in Morphological description of a new species of Capnia (Plecoptera: Capniidae) with DNA barcoding of genus members from the Russian Far East
FIGURES 8–11. 8. Drift net for collecting stoneflies. 9–11. Holotype and paratype localities of Capnia yavorskayae sp. nov., the Komsomolskiy State Nature Reserve, Gorin River Basin, the Low Amur River Basin, Khabarovskiy Kray, Far East of Russia. 9. Paratype. The unnamed stream near Kamennaya Pad cordon. 10. Holotype. The unnamed stream, Khankuka Stream Basin. 11. Paratype. The Siutaru Stream.
FIGURES 39–42 in Taxonomy of Diamesa steinboecki group (Diptera: Chironomidae: Diamesinae) with description and DNA barcoding of known species. II. Subgroups davisi, leona and loeffleri
FIGURES 39–42. Adult males of Diamesa leona Roback (macropterous form) from Chukotka (39–40), Baikal Region (41) and Kazakhstan (42). 39, hypopygium without tergite IX in dorsal view; 40, part of tergite IX with anal point (bent out on slide); 41–42, hypopygium in dorsal view.
FIGURE 25 in DNA barcodes reveal different speciation scenarios in the four North American Anthocharis Boisduval, Rambur, [Duménil] & Graslin, [1833] (Lepidoptera: Pieridae: Pierinae: Anthocharidini) species groups
FIGURE 25. Distribution of "cethura group". Blue-filled square—subspecies morrisoni, red-filled squares—nominotypical subspecies cethura, pink-filled squares—subspecies hadromarmorata, green-filled squares—subspecies mohavensis, orangefilled squares—subspecies pima, yellow-filled square—subspecies catalina, violet-filled squares—subspecies bajacalifornica, pale-blue filled square—un-named population similar to pima from Baja California Cape region.
DNA barcodes are ineffective for species identification of Acropora corals from the aquarium trade
<p>DNA barcode sequences</p>
FIGURE 7 in Confirming the occurrence of two fiddler crabs, Tubuca dussumieri (H. Milne Edwards, 1852) and T. coarctata (H. Milne Edwards, 1852) (Crustacea: Decapoda: Ocypodidae), in Hong Kong by DNA barcoding and morphology
FIGURE 7. Genealogical network for the COI haplotypes observed within the clades of Tubuca coarctata (H. Milne Edwards, 1852) (A), and T. dussumieri (H. Milne Edwards, 1852) (B). Unlabelled hatches indicate inferred haplotypes not found in the sampled population. Gray circle indicates the haplotype found in Hong Kong. For haplotype names, see Table 1. AU: Australia; FJ: Fiji, HK: Hong Kong; ID: Indonesia; ML: Malaysia; PH: Philippines; RK: Ryukyus; TW: Taiwan.
FIGURE 3 in The ant genus Rhopalomastix (Hymenoptera: Formicidae: Myrmicinae) in Southeast Asia, with descriptions of four new species from Singapore based on morphology and DNA barcoding
FIGURE 3. Profile views of clypeus of four Rhopalomastix species. 3A, R. striata; 3B, R. javana; 3C, R. johorensis; 3D, R. tenebra.
FIGURE 10 in With DNA barcoding revealing sexual dimorphism in a water mite: the first description of male Sperchon fuxiensis (Acari: Hydrachnidia: Sperchontidae)
FIGURE 10. Neighbour-joining (NJ) tree of the water mites inferred from the DNA barcoding of COI (details of the specimens are shown in Table 1). Bootstrap value based on 1,000 replications is shown near the branch.
FIGURES 1–3. Sperchon fuxiensis, Male. 1 in With DNA barcoding revealing sexual dimorphism in a water mite: the first description of male Sperchon fuxiensis (Acari: Hydrachnidia: Sperchontidae)
FIGURES 1–3. Sperchon fuxiensis, Male. 1. idiosoma, dorsal view; 2. decoration pattern of integument; 3. idiosoma, ventral view.
FIGURES 4–9. Sperchon fuxiensis, Male. 4 in With DNA barcoding revealing sexual dimorphism in a water mite: the first description of male Sperchon fuxiensis (Acari: Hydrachnidia: Sperchontidae)
FIGURES 4–9. Sperchon fuxiensis, Male. 4. infracapitulum; 5. chelicera; 6. palpal; 7. claw; 8. IV-L-1–IV-L-6; 9. dorsal seta of IV-L-4.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.