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American mistletoes: A dataset of Phoradendron species and their hosts across their distribution range
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The data of 'A quantitative assessment of potential benefits and challenges of international researcher mobility for home and host countries: Evidence from the Chinese Scholarship Council program ''
<p>This dataset includes all the data of results related to the paper 'A quantitative assessment of potential benefits and challenges of international researcher mobility for home and host countries: Evidence from the Chinese Scholarship Council program'. We have provided only the processed data, as the raw data from Web of Science is subject to licensing restrictions and cannot be publicly shared. </p>
Dataset and Code used in ApJ publication: "A novel approach to understanding the link between supermassive black holes and host galaxies"
<p>All the data of this paper is found under BH_M-sigma_compilation/Data</p> <p>The main data tables are found the at BH_M-sigma_compilation/Data/BHcompilation_updated.csv</p> <p>The SDSS data galSpecInfo-dr8.fits and galSpecLine-dr8.fits can be found at: <a href="https://www.sdss3.org/dr8/spectro/spectro_access.php" rel="nofollow">https://www.sdss3.org/dr8/spectro/spectro_access.php</a></p> <p>The main code for this paper is at BH_M-sigma_compilation/Code/Mixture_Upper_Limits and consists of the 3 files for the Stan model, R code and Python code respectively: model.stan stan_fit.r hurdle_model.ipynb</p> <p>The figures generated for the paper can be found at BH_M-sigma_compilation/Figures</p> <p>A novel approach to understanding the link between supermassive black holes and host galaxies © 2024 by Gabriel Sasseville is licensed under CC BY 4.0. To view a copy of this license, visit <a href="https://creativecommons.org/licenses/by/4.0/" rel="nofollow">https://creativecommons.org/licenses/by/4.0/</a></p>
Host-level biodiversity shapes the dynamics and networks within the coral reef microbiome
<p>This is the repository associated with the manuscript <strong>Host-level biodiversity shapes the dynamics and networks within the coral reef microbiome</strong>. It contains all data files used for figures presented in the manuscript. The code to reproduce the files can be found on <a href="https://github.com/SushiLab/coralmicrobiome-hostbiodiversity)">GitHub</a>.</p> <p> </p> <h2>Files</h2> <p><br><code>raw_host-associated_1.asvs.tsv --> ASV table, host-associated samples</code><br><code>raw_host-associated_2.asvs.tsv --> ASV table, host-associated samples</code><br><code>raw_free-living_1.asvs.tsv --> ASV table, Sterivex samples</code><br><code>raw_free-living_2.asvs.tsv --> ASV table, Sterivex samples</code><br><code>metadata_host-associated.csv --> metadata, host-associated samples</code><br><code>metadata_free-living.csv --> ASV table, Sterivex samples</code><br><code>asv_dat_taxinfo.tsv --> taxonomy annotated using SILVA v138.1</code><br><code>asv_bctab.tsv --> square-root transformed Bray-Curtis dissimilarities </code><br><code>asv_richtab.tsv --> Hill number diversity indices</code><br><code>asv_shared.tsv --> number of shared ASVs</code><br><code>pathway_list_cat.csv --> KEGG pathway list with hand-annotated categories</code><br><code>KEGG_path_to_ko.tsv --> KEGG file mapping pathways to KOs</code></p> <p> </p>
Figure 2 in New observations on prey scarab beetles and host plants of the green lynx spider, Peucetia viridans (Hentz, 1832) (Araneae: Oxyopidae) in Oaxaca, Mexico
Figure 2. Prey beetles and host plants of the green lynx spider, Peucetia viridans. (a) Lantana camara; (b) Wigandia urens; (c) Solanum mitlense; (d) P. viridans feeding on Diplotaxis trapezifera on W. urens; (e) P. viridans feeding on Macrodactylus fulvescens on L. camara; (f) Paranomala discoidalis being consumed by P. viridans; (g) Strigoderma costulipennis on the inflorescence of Croton ciliatoglandulifer; (h) Strigoderma sulcipennis on Solanum mitlense leaf; (i) Euphoria pulchella on Solanum mitlense leaf.
Figure 1 in New observations on prey scarab beetles and host plants of the green lynx spider, Peucetia viridans (Hentz, 1832) (Araneae: Oxyopidae) in Oaxaca, Mexico
Figure 1. (a) Location of the study sites in the Valles Centrales region of Oaxaca, Mexico. (b) Landscape in Villa de Zaachila; (c) landscape in San Pedro Mártir.
Figure 6 in Parasitoid complex associated with the flea weevil Orchestes alni L. (Coleoptera: Curculionidae) in Bulgaria and a review of host-parasitoid interactions of genus Orchestes Illiger
Figure 6. Pteromalidae. Habitus of Pteromalus varians (a: female, b: male) and Trichomalus inscitus (c: female, d: male).
Figure 3 in Parasitoid complex associated with the flea weevil Orchestes alni L. (Coleoptera: Curculionidae) in Bulgaria and a review of host-parasitoid interactions of genus Orchestes Illiger
Figure 3. Eulophidae. Habitus of Baryscapus nigroviolaceus (a: female), Chrysocharis nephereus (b: female), Chrysocharis pentheus (c: female), Cirrospilus lyncus (d: female), Cirrospilus pictus (e: male) and Closterocerus ruforum (f: female).
Figure 1 in Parasitoid complex associated with the flea weevil Orchestes alni L. (Coleoptera: Curculionidae) in Bulgaria and a review of host-parasitoid interactions of genus Orchestes Illiger
Figure 1. Adults of Orchestes alni emerged from samples collected in Sofia (specimen with darker (a) and lighter (b) colouration, dorsal view; specimen with darker (c) and lighter (d) colouration, lateral view).
Figure 4 in Parasitoid complex associated with the flea weevil Orchestes alni L. (Coleoptera: Curculionidae) in Bulgaria and a review of host-parasitoid interactions of genus Orchestes Illiger
Figure 4. Eulophidae. Habitus of Closterocerus trifasciatus (a: female), Minotetrastichus platanellus (b: female), Pediobius saulius (c: female, d: male), Pnigalio agraules (e: female) and Pnigalio cf. nemati (f: female).
Figure 5 in Parasitoid complex associated with the flea weevil Orchestes alni L. (Coleoptera: Curculionidae) in Bulgaria and a review of host-parasitoid interactions of genus Orchestes Illiger
Figure 5. Eulophidae and Eupelmidae. Habitus of Pnigalio cf. soemius (a: female), Tetrastichus miser (b: female), Tetrastichus cf. calmius (c: female), Eupelmus barai (d: female), Eupelmus confusus (e: male) and Eupelmus urozonus (f: female).
Experimental and computational data of "Nanoconfinement-induced electrochemical ion-solvent cointercalation in pillared titanate host materials"
<p>Electrochemical ion-solvent cointercalation reactions are an avenue to reach improved kinetics compared to the corresponding intercalation of desolvated ions. Here, we demonstrate the impact of different structural pillar molecules on the electrochemical Li<sup>+</sup> intercalation mechanism in expanded hydrogen titanate (HTO) electrode materials. We show that interlayer-expansion of HTO with organic pillars can enable cointercalation reactions. Their electrochemical reversibility is drastically improved when non-cross-linking pillars are employed that expand and separate the host material’s individual layers, underlining the impact of the electrochemo-mechanics of the nanoconfined interlayer space. This pillared HTO structure results in an increased Li<sup>+</sup> storage capacity and reversibility compared to pristine HTO. We derive structural models of the pillared HTO host materials based on combined experiments and theoretical calculations, and employ electrochemical operando experiments to unambiguously demonstrate the nanoconfinement-induced cointercalation mechanism in pillared HTO electrode materials. The work demonstrates the potential of nanoconfined pillar molecules to modify host materials and enable highly reversible cointercalation reactions with improved capacity and kinetics.</p>
Figure 1. Ishigakidiplosis karamae and its host plant. A in Integrative taxonomy reveals a new gall midge genus and species (Diptera: Cecidomyiidae) developing in the flower buds of Pongamia pinnata (Fabaceae) in Japan
Figure 1. Ishigakidiplosis karamae and its host plant. A* Pongamia pinnata (Fabaceae) growing behind mangroves on Ishigaki Island* Japan. B* flower buds of P. pinnata infested with I. karamae (red arrows). C* immature larvae in a flower bud that has been cut open. D* mature larva in a flower bud that has been cut open. E* freshly emerged female. F* freshly emerged male (terminal tarsal segments are lost).
Innate preference hierarchies coupled with adult experience, rather than larval imprinting or transgenerational acclimation, determine host plant use in Pieris rapae
The evolution of host range drives diversification in phytophagous insects, and understanding the female oviposition choices is pivotal for understanding host specialization. One controversial mechanism for female host choice is Hopkins' host selection principle, where females are predicted to increase their preference for the host species they were feeding upon as larvae. A recent hypothesis posits that such larval imprinting is especially adaptive in combination with anticipatory transgenerational acclimation, so that females both allocate and adapt their offspring to their future host. We study the butterfly <i>Pieris rapae</i>, for which previous evidence suggests that females prefer to oviposit on host individuals of similar nitrogen content as the plant they were feeding upon as larvae, and where the offspring show higher performance on the mother's host type. We test the hypothesis that larval experience and anticipatory transgenerational effects influence female host plant acceptance (no-choice) and preference (choice) of two host plant species (<i>Barbarea vulgaris</i> and <i>Berteroa incana</i>) of varying nitrogen content. We then test the offspring performance on these hosts. We found no evidence of larval imprinting affecting female decision-making during oviposition, but that an adult female experience of egg laying in no-choice trials on the less-preferred host <i>Be. incana</i> slightly increased the <i>P. rapae</i> propensity to oviposit on <i>Be. incana</i> in subsequent choice trials. We found no transgenerational effects on female host acceptance or preference, but negative transgenerational effects on larval performance, because the offspring of <i>P. rapae</i> females that had developed on<i> Be. incana</i> as larvae grew slower on both hosts, and especially on <i>Be. incana</i>. Our results suggest that among host-species preferences are guided by hard-wired preference hierarchies linked to species-specific host traits and less affected by larval experience or transgenerational effects, which may be more important for females evaluating different host individuals of the same species.
FIGURES 1–4. R in New species and host plant records for Neotropical Rhagoletis Loew (Diptera: Tephritidae)
FIGURES 1–4. R. antioquiensis female (Colombia: Antioquia, La Unión ICAMF00000480): 1, Habitus; 2, Head frontal; 3, Head lateral; 4, Thorax and head, dorsal.
FIGURES 37–40. Urophora scutellaris lectotype. 37 in New species and host plant records for Neotropical Rhagoletis Loew (Diptera: Tephritidae)
FIGURES 37–40. Urophora scutellaris lectotype. 37, Habitus, dorsal; 38, Habitus, lateral; 39, Right wing; 40, Labels.
FIGURES 10–13. R in New species and host plant records for Neotropical Rhagoletis Loew (Diptera: Tephritidae)
FIGURES 10–13. R. antioquiensis (Colombia: Antioquia, La Unión ICAMF00000480); 10, denticles of eversible mebrane; 11, aculeus; 12, aculeus tip; 13, Spermatheca. 14, R. jamaicensis female (Colombia: Anolaima ICAMF00000512) habitus, lateral; 15, Rhagoletis. sp., psalida complex female (Colombia: Bogotá, ICAMF00000534), habitus, dorsal, on host plant and copulating on a stem of S. interandinum Bitter.
FIGURES 23–29 in New species and host plant records for Neotropical Rhagoletis Loew (Diptera: Tephritidae)
FIGURES 23–29. Host plants of R. jamaicensis: 23–27, Acnistus arborescens (L.) Schrtdl from Anolaima; 23, Shrub; 24, Fruiting branch; 25, Fruit detail; 26, Ripe fruits detail; 27, Larva feeding; 28–29, Witheringia solanacea L'Her from Tena; 28, Fruiting branch; 29, Detail of fruit with damage of larvae.
FIGURES 5–9. R in New species and host plant records for Neotropical Rhagoletis Loew (Diptera: Tephritidae)
FIGURES 5–9. R. antioquiensis: 5–6, female (Colombia: Antioquia, La Unión ICAMF00000480); 5, Wing; 6, Abdomen dorsal; 7–9, male (Colombia: Antioquia, Abejorral ICAMF00000481); 7, Abdomen dorsal; 8–9, Male terminalia, epandrium and surstyli; 8, Posterodorsal; 9, Lateral.
The probability of being infected with haemosporidian parasites increases with host age
<p><span><span><span><span><span><span><span><span><span><span><span>In vertebrates, disease susceptibility often varies with age. Older individuals may be more susceptible than younger individuals due to senescent declines in immune function. Alternatively, disease susceptibility may decrease with age if older individuals are more likely to have had prior exposures to parasites and acquired adaptive immune responses that allowed them to resist future infections. Disease susceptibility can also vary with reproductive state, and reproductive hormones have been shown to increase infection susceptibility. Here we investigated how age and experimentally elevated levels of the reproductive hormone testosterone affected haemosporidian infections in free-living adult male dark-eyed juncos (<i>Junco hyemalis</i>). Samples were collected before and at least one year after experimental treatment with either a testosterone implant or empty control implant. The probability of being infected with haemosporidians in the <i>Plasmodium/Haemoproteus </i>group increased with host age but was unaffected by experimental testosterone elevation. Our longitudinal sampling design allowed us to determine that the increase in infections with host age was driven by variation within individuals, such that an individual's probability of being infected increased with age. This suggests that haemosporidian susceptibility increases with host age, and/or that haemosporidian-infected juncos sustain long-term chronic infections that are rarely completely cleared, and that the probability of being infected is higher in older juncos because they have experienced higher cumulative exposure risk.</span></span></span></span></span></span></span></span></span></span></span></p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.