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Data from: Protection mutualists affect colonization and establishment of host-associated species in a coral reef cryptofauna community
<p>Protection mutualists display territorial behaviors that provide protective services for their host species. To investigate how protection mutualists impact the colonization and establishment of host-associated species, we conducted a two-stage experiment using a coral reef cryptofauna community as our study system. <em>Pocillopora meandrina </em>is a fairly common, branching coral species that forms habitat that is utilized by a variety of marine organisms. There is a guild of protection mutualists that associate with <i>P</i>. <em>meandrina </em>including Trapeziidae crabs and Alpheidae shrimp. We manipulated coral colonies to have Trapeziidae crabs, Alpheidae shrimp, both, or neither. For the first part of our experiment, we observed colonization of marine invertebrates to these colonies every other day for two months, while resetting the treatment levels every seven days. For the second part of our experiment, we surveyed the community composition weekly and then monthly for a total of six months without interference. During both experiments, we measured the initial and final size of the host coral colonies as a metric of fitness. Data are provided for observed marine decapods through time on each of forty experimental coral colonies for the colonization and the establishment experiments. Data are also provided for coral colony size at the beginning and end of each experiment. </p>
Figure 6. Mismatch distributions. A in Comparative phylogeography of two symbiotic dorvilleid polychaetes (Iphitime cuenoti and Ophryotrocha mediterranea) with contrasting host and bathymetric patterns
Figure 6. Mismatch distributions. A, graph for Iphitime cuenoti, represents the mismatch distribution for western Mediterranean basin and Atlantic waters. Graphs for Ophryotrocha mediterranea: B, complete population from the western Mediterranean; C-D, for lineages L1 and L2, respectively. Exp, expected; Obs, observed; SSD, the sum of square deviations between the expected and the observed mismatch. TAU, Theta0 and Theta1 are the mismatch model parameters: TAU, units of mutational time; Theta0, initial population size at equilibrium; Theta1, new population size after growth or shrink.
Figure 5. A in Comparative phylogeography of two symbiotic dorvilleid polychaetes (Iphitime cuenoti and Ophryotrocha mediterranea) with contrasting host and bathymetric patterns
Figure 5. A, median-joining haplotype networks of mtDNA cytochrome c oxidase subunit I sequences for Ophryotrocha mediterranea. Empty circles represent missing haplotypes. Black points represent mutational steps. Circle size and pie size are proportional to the haplotype frequency. B, haplotype distribution in the studied populations of both lineages 1 and 2. WALB, western Alborán; EALB, eastern Alborán; ALBI, Alborán Island; VALE, Valencia; NCAT, northern Catalunya; ALAC, Alicante.
Figure 2. A in Comparative phylogeography of two symbiotic dorvilleid polychaetes (Iphitime cuenoti and Ophryotrocha mediterranea) with contrasting host and bathymetric patterns
Figure 2. A, Iphitime cuenoti, male. B, Iphitime cuenoti, female. C, Ophryotrocha mediterranea. D, Liocarcinus depurator. E, Goneplax rhomboides. F, Macropipus tuberculatus. G, Bathynectes maravigna. H, Geryon longipes.
Figure 4 in Comparative phylogeography of two symbiotic dorvilleid polychaetes (Iphitime cuenoti and Ophryotrocha mediterranea) with contrasting host and bathymetric patterns
Figure 4. Median-joining haplotype networks of mtDNA cytochrome c oxidase subunit I sequences for Iphitime cuenoti in relation to its host crab. Empty circles represent missing haplotypes. Black points represent mutational steps. Circle size and pie size are proportional to the haplotype frequency.
Spatial autocorrelation shapes liana distribution better than topography and host tree properties in a subtropical evergreen broadleaved forest in SW China
<p>Lianas are an important component of subtropical forests, but the mechanisms underlying their spatial distribution patterns have received relatively little attention. Here, we selected 12 most abundant liana species, constituting up to 96.9% of the total liana stems, in a 20-ha plot in a subtropical evergreen broadleaved forest at 2,472 – 2,628 m elevation in SW China. Combining data on topography (convexity, slope, aspect, and elevation) and host trees (density and size) of the plot, we addressed how liana distribution is shaped by host tree properties, topography and spatial autocorrelation by using principal coordinates of neighbor matrices (PCNM) analysis. We found that lianas had an aggregated distribution based on the Ripley's <i>K</i> function. At the community level, PCNM analysis showed that spatial autocorrelation explained 43% variance in liana spatial distribution. Host trees and topography explained 4% and 18% of the variance, but less than 1% variance after taking spatial autocorrelation into consideration. A similar trend was found at the species level. These results indicate that spatial autocorrelation might be the most important factor shaping liana spatial distribution in subtropical forest at high elevation.</p>
Figure 3 in A new subfamily for a clade of opecoelids (Trematoda: Digenea) exploiting marine fishes as second-intermediate hosts, with the first report of opecoelid metacercariae from an elasmobranch
Figure 3. The pylogenetic pattern of second-intermediate host groups, including Amphipoda, Cephalopoda, Chondricthyes, Decapoda, Echinoidea, Gastropoda, Hirudinea, Insecta, Oligochaeta and Osteichthyes, exploited by the Opecoelidae, constructed through maximum likelihood analysis of partial 28S ribosomal DNA data, with two brachycladioids forming the outgroup. Taxa in collapsed clades and GenBank accession numbers for all taxa are listed in Table 3. New sequence data are in bold. Support values <50% are omitted. Scale bar indicates the number of substitutions per site.
FIGURES 80–81 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 80–81. Global predominance of the monophagous species among currently studied Tischeriidae (following two different terminological systems)
FIGURES 19–22 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 19–22. Male genitalia of Coptotriche turpinia Xu & Dai, sp. nov., Jiangxi Province, China (GNU). 19, capsule with phallus removed, holotype, slide no. BX15012; 20, same, paratype, slide no. Liu0087001; 21, same, ventral view of phallus, paratype, slide no. Liu0087001; 22, lateral view of phallus, holotype, slide no. BX15012
FIGURES 56–61 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 56–61. Bionomics of Coptotriche turpinia Xu & Dai, sp. nov. 56, habitat, Jiangxi Province, China; 57–61, leaf mines on Turpinia arguta (Lindl.) Seem. (Staphyleaceae)
FIGURES 23–28 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 23–28. Male genitalia of Coptotriche turpinia Xu & Dai, sp. nov., Lao Cai Province, Vietnam, paratype, slide no. AD1056 (ZIN). 23, ventral view, focused on uncus and transtilla; 24, same, focused on valva; 25, same, multifocus; 26, same, focused on tegumen; 27, same, focused on vinculum; 28, same, focused on spines of phallus
FIGURES 12–18 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 12–18. Genitalia of Coptotriche camptotheca Xu & Dai, sp. nov. 12, 13, male genitalia, paratype, slide no. BX12094. 14, same, another paratype, slide no. Liu0117; 15, female genitalia, paratype, slide no. BH12093; 16, same, another paratype, slide no. Liu01160001; 17, male genitalia, phallus, paratype, slide no. BX12094; 18, same, another paratype, slide no. Liu0117 (GNU)
FIGURES 49–55 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 49–55. Bionomics of Coptotriche camptotheca Xu & Dai, sp. nov. 49, habitat, Guizhou Province, China; 50, host plant Camptotheca acuminata Decne. (Nyssaceae); 51–55, leaf mines
FIGURES 67–73 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 67–73. Leaf mines of Coptotriche asiana Diškus & Stonis, sp. nov. on Symplocos sumuntia Buch.-Ham. ex D. Don (Symplocaceae), sample no. 5191, Lao Cai Province, Vietnam
FIGURES 1–4 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 1–4. Adults of new Coptotriche species. 1, C. camptotheca Xu & Dai, sp. nov., female paratype, Jiangxi Province, China; 2, same, another female paratype (GNU); 3, 4, C. turpinia Xu & Dai, sp. nov., male holotype, Jiangxi Province, China (GNU)
FIGURES 43–48 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 43–48. Female genitalia of Coptotriche asiana Diškus & Stonis, sp. nov. 43, general view, paratype, slide no. AD1053 (GNU); 44, coils of ductus spermathecae, paratype, slide no. AD1041 (ZIN); 45–48, variously focused on ovipositor lobes, paratype, slide no. AD1053 (GNU)
FIGURES 62–66 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 62–66. Habitat and host plants of Coptotriche asiana Diškus & Stonis, sp. nov. 62, habitat 15 km NW of Sa Pa, Lao Cai Province, Vietnam, 22°20'N, 103°46'E, elevation ca. 1900 m; 63, Symplocos sumuntia Buch.-Ham. ex D. Don, sample no. 5191; 64, S. poilanei Guill., sample no. 5193; 65, 66, Symplocos glauca (Thunb.) Koidz., sample no. 5197
FIGURES 37–42 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 37–42. Male genitalia of Coptotriche asiana Diškus & Stonis, sp. nov. 37, 38, ventral view of capsule, paratype, slide no. AD1054 (NRC); 39, vinculum, paratype, slide no. AD1057 (GNU); 40, 41, lateral view of capsule with phallus removed, paratype, slide no. AD1043 (ZIN); 42, lateral view of valva, paratype, slide no. AD1057 (GNU)
FIGURES 29–36 in Discovery of the new Coptotriche species in China revealed two novel host-plant families and host-plant orders for Tischeriidae, a family of stenophagous, leafmining lepidopterans
FIGURES 29–36. Male genitalia of Coptotriche asiana Diškus & Stonis, sp. nov., Lao Cai Province, Vietnam. 29, general view, holotype, slide no. AD1044 (ZIN); 30–34, spines of phallus, paratype, slide no. AD1057 (GNU); 35, phallus, paratype, slide no. AD944 (NRC); 36, same, capsule, with phallus removed
FIGURE 3 in First record of the parasitic barnacle Anelasma squalicola Darwin, 1852 (Pollicipedomorpha: Pollicipedidae) in the Eastern Pacific Ocean and a new host report: Etmopterus benchleyi Vásquez, Ebert & Long, 2015 (Squaliformes: Etmopteridae)
FIGURE 3. Anelasma squalicola (UCR 3711-001) found as parasite of the Ninja lanternshark, Etmopterus benchley. A. Specimen of ~28.8 mm TL, parasite of a female shark of 43.5 cm TL (see Fig. 1); Ovigerous specimen of ~29.1 mm TL parasite of a male shark of 52.5 cm TL (see Fig. 2); the arrowhead points towards the eggs within the mantle cavity. The peduncular bulbous structure covered with fine and root-like filaments was not properly removed from the shark tissue and, therefore, is not illustrated in the figure. Scale bar 2 cm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.