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7,195
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Dataset results
7,195 results for “SET”
Source code for ferroptosis gene set activity analysis in BLCA epithelial cells
<p>Source code for ferroptosis gene set activity analysis in BLCA epithelial cells </p>
The data set to paper: Hydrolytic instability of laser-ablatively deposited CaSi2 coatings in air and neutral water affects the behavior of bone healing-related cell types
<p>Main message of this study is focused on calcium silicide (CaSi<sub>2</sub>) instability in humid air or pH-neutral water remains unknown, although the topochemical formation of silicene from CaSi<sub>2</sub> in various aqueous phases is a well-known process. The reseach reports on laser ablation of CaSi<sub>2</sub> in the vacuum and ethanol and examine the instability of the deposited coatings in humid air and neutral water. We further investigate the behavior of human mesenchymal stromal cells (hMSCs), vascular cells (HUVECS, human umbilical vein endothelial cells), and macrophages (derived from THP-1 cell line) in contact with the deposited coatings submerged in cell culture medium. </p>
Data Set for Asymmetric Effects of Government Investment on Private Agricultural Spending in Iraq: A Nonlinear ARDL Approach
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Domain scanning results for a selected set of high-quality-annotation protein isoforms produced by human transcription factor genes
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Data set and simulation code for "Design and Control Optimization for Hybrid-Controlled Overconstrained Cable-Driven Parallel Robots"
<p>See the attached readme file</p>
Data Set for GUI Programming Learning
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Data Set for GUI Programming Learning (ICITSI2024)
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Synthetic data and basis-set for ABfit-reg paper
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BIoT synthetic data set
<p>This is a complete data set of my master thesis in the form of diagram taken from Grafana.</p>
Data set: Reproductive character displacement in genital morphology in Ohomopterus ground beetles
<p>Genital morphology reveals rapid diversification among species, and species-specific divergence in genital morphology may result in reproductive isolation and promote speciation. Natural selection against maladaptive hybridization may cause species-specific genital divergence. In this context, divergence in mating traits is expected to be greater between sympatric populations than between allopatric populations in a pair of species, known as reproductive character displacement (RCD). However, there are few examples of RCD in the genital morphology of closely related species. Additionally, processes leading to RCD have rarely been inferred. In this study, we examined RCD and its underlying mechanisms by focusing on species-specific genital morphologies of closely related <i>Ohomopterus</i>ground beetle species. A morphological analysis showed patterns of RCD in species-specific genital parts in both sexes. Interspecific hybridization was confirmed by a mate choice experiment and by a population genetic analysis indicating extensive interspecific gene flow, suggesting that reinforcement is the most plausible process underlying the observed RCD. We found variation in the degree of displacement in contact zones, which may correspond with the ongoing process of genital evolution and speciation. Our results provide support for the lock-and-key hypothesis of genital evolution in closely related <i>Ohomopterus </i>species.</p>
Data set 2015
<p>Dada set of morbidity items from Canary Health Survey, 2015</p>
Data set 2009
<p>Data set of morbidity items from Canary Health Survey, 2009</p>
Data set 2004
<p>Data set of morbidity items form Canary Health Survey, 2004 </p>
Data Set of From Monolith to Microservices: Static and Dynamic Analysis Comparison
<p>Contains the JSON files with the collected data and the results of the study done.</p>
Data set for the paper "Temperatures and cooling rates recorded by the New Caledonia ophiolite: implications for cooling mechanisms in young forearc sequences"
<p>Tables 1-3 and Tables S1-S4</p>
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 04
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 04 contains a stitched image montage of the first and of the last semithin section from the analysis of patient C06, which was acquired by bright-field light microscopy.</p>
Dataset for Manuscript "Evaluating Inequalities in Access to Evidence Based Surgical Care: A Systematic Review of Surgical Literature Publication and Consumption Opportunities Across Resource Settings"
<p>Dataset for a global access surgical literature systematic review. registered on Propsero (<strong>CRD42021240227) </strong>and titled <strong>Evaluating Inequalities in Access to Evidence Based Surgical Care: A Systematic Review of Surgical Literature Publication and Consumption Opportunities Across Resource Settings</strong></p>
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 16
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 16 contains stitched image montages of a thin section through the lung of patient C06 which were acquired by scanning electron microscopy. The file “Data_set_16.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.</p>
Data set for "Investigating the structural changes due to adenosine methylation of ORF50 in Kaposi's sarcoma-associated herpes virus"
<p>Data set containing the pathsample databases, and analysis scripts used</p>
DNA methylation of the natriuretic peptides system genes and ischemic stroke: gene-based and gene-set analyses
<p><span><b>Background</b></span></p> <p><span>The natriuretic peptides (NP) system has been considered an important regulator for ischemic stroke (IS) with a limited clinical implication. A better understanding of the underlying molecular mechanisms is urgent. Here, we aimed to examine the role of NP system genes methylation in IS.</span></p> <p><span><b>Methods and Results</b></span></p> <p><span>DNA methylation at promoter regions of four core NP system genes, e.g., <i>CORIN</i>, <i>FURIN</i>, <i>NPPA</i>, and <i>NPPB</i>, was measured by targeted bisulfite sequencing in 853 IS patients and 918 healthy controls. We first examined the association between DNA methylation at each single CpG and IS, followed by gene-based and gene-set analyses to examine the joint associations of DNA methylation at multiple CpGs in a gene or all four genes as a pathway with IS. After control of covariates and multiple testing, DNA methylation at 19 of the 36 assayed CpGs were individually associated with IS at q<0.05. The average methylation levels at the targeted regions of <i>CORIN</i> (OR=0.64, 95%CI: 0.56-0.73), <i>FURIN</i> (OR=0.78, 95%CI: 0.69-0.88), and <i>NPPA</i> (OR=0.78, 95%CI: 0.69-0.88) were inversely associated with IS (all q<0.05). The truncated product method revealed the same gene-based associations (all q<0.05) and found that DNA methylation at all four NP system genes together was jointly associated with IS (<i>P</i>=0.0001).</span></p> <p><span><b>Conclusions</b></span></p> <p><span>DNA methylation at NP system genes was downregulated in IS patients. Our results may unravel a molecular mechanism underlying the regulating effect of the NP system on IS, and highlight the relevance of testing the joint effect of multiple CpGs in the epigenetic analysis.</span></p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.