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Supplementary material 2 from: Radek R, Wurzbacher C, Strassert JFH (2023) New nephridiophagid genera (Fungi, Chytridiomycota) in a mallow beetle and an earwig. MycoKeys 100: 245-260. https://doi.org/10.3897/mycokeys.100.111298
SSU rRNA gene sequence alignments used for phylogenetic tree reconstruction (Figure 3)
Figure 2 from: Radek R, Wurzbacher C, Strassert JFH (2023) New nephridiophagid genera (Fungi, Chytridiomycota) in a mallow beetle and an earwig. MycoKeys 100: 245-260. https://doi.org/10.3897/mycokeys.100.111298
Figure 2 Nephridiophagid (Malpighivinco podagricae) from Podagrica malvaeA–C differential interference microscopy (DIC) D–H Giemsa staining I, J scanning electron microscopy (SEM) K–O transmission electron microscopy (TEM) A fresh squash preparation of infected Malpighian tubules with young sporogenic plasmodia (ysp) and mature sporogenic plasmodia (msp) inside and outside the tubules B nuclei of vegetative plasmodia (vp) and young spores in sporogenic plasmodia have less contrast than mature spores C mature spores D, E vegetative plasmodia with few (D) or many (E) nuclei F young sporogenic plasmodium with small vegetative nuclei (vn) and larger sporogenic nuclei (sn) G the nuclei of thin-walled young spores are stained H in mature sporogenic plasmodia, only the vegetative nuclei between the spores are stained (arrows) I, J flattened mature spores with central spore opening on one side (I) K ultra-thin section of a sporogenic plasmodium with uninucleated mature spores and vegetative nuclei in the mother cytoplasm. n = nuclei L thin-walled young spore with a nucleus in polar position, mitochondria (mi) and endoplasmic reticulum (er) M maturing spore with attached vesicles (ve) delivering spore wall material and centrally located nucleus N, O mature spores with five-layered, thick spore wall, dense cytoplasm and central nucleus. Scale bars: 10 µm (A–H); 5 µm (K); 1 µm (I, J, L–O).
Figure 1 from: Radek R, Wurzbacher C, Strassert JFH (2023) New nephridiophagid genera (Fungi, Chytridiomycota) in a mallow beetle and an earwig. MycoKeys 100: 245-260. https://doi.org/10.3897/mycokeys.100.111298
Figure 1 Nephridiophagid (Nephridiochytrium forficulae) from Forficula auriculariaA–D differential interference microscopy (DIC) E, F Giemsa staining G, H scanning electron microscopy (SEM) I–M transmission electron microscopy (TEM) A Malpighian tubule filled with vegetative plasmodia (vp), young sporogenic plasmodia (ysp) and mature sporogenic plasmodia (msp) B young spores have a thin, yet transparent spore wall and a nucleus positioned near a cell pole or centrally C left plasmodium with large mature spores, right plasmodium with smaller, younger spores. Arrow points to plasma membrane D single mature spores E Giemsa staining reveals residual nuclei (arrows) of the plasmodium between mature spores F vegetative plasmodium with stained nuclei. s = spores G, H flattened oval spores with rim and a central spore opening on one side (G) I ultrathin section through a Malpighian tubule infected with different stages: small, uninucleate merozoites (m), vegetative plasmodia with several nuclei, sporogenic plasmodia (sp) and mature spores. n = nucleus. The epithelium of the Malpighian tubule (M) contains concretions (cr) J young sporogenic plasmodium containing young spores with a thin spore-wall (sw), one nucleus, endoplasmic reticulum (er) and mitochondria (mi) K part of a mature sporogenic plasmodium with a residual nucleus and two mature spores with a centrally located nucleus and a thick spore-wall L cross-section of a mature spore in the degenerating plasmodial cytoplasm. The spore wall consists of five layers (1–5). ve = vesicles M mature spore in longitudinal section showing the thin-walled cap of the spore opening (so). Scale bars: 50 µm (A); 10 µm (B–F, I); 5 µm (G, H, J); 2 µm (K); 1 µm (L, M).
Figure 3 from: Gu X, Wang R, Sun Q, Wu B, Sun J-Z (2020) Four new species of Trichoderma in the Harzianum clade from northern China. MycoKeys 73: 109-132. https://doi.org/10.3897/mycokeys.73.51424
Figure 3 Trichoderma vermifimicola (CGMCC 3.19694). Cultures at 25 °C after 3 days (A on PDA B on CMDC on SNA) D conidiation pustules on CMD after 10 days E conidiation pustules on SNA after 10 d F, H conidiophores G, J, K conidiophores and phialides I conidia. Scale bars: 25 µm (F, H); 10 µm (G, J–K).
Figure 4 from: Gu X, Wang R, Sun Q, Wu B, Sun J-Z (2020) Four new species of Trichoderma in the Harzianum clade from northern China. MycoKeys 73: 109-132. https://doi.org/10.3897/mycokeys.73.51424
Figure 4 Trichoderma xixiacum (CGMCC 3.19697). Cultures at 25 °C after 3 d (A on PDA B on CMDC on SNA) D conidiation pustules on CMD after 10 d E conidiation pustules on SNA after 10 d F, G, I conidiophores and phialides H conidia. Scale bars: 10 µm (F, G); 10 µm (H, I).
Figure 2 from: Gu X, Wang R, Sun Q, Wu B, Sun J-Z (2020) Four new species of Trichoderma in the Harzianum clade from northern China. MycoKeys 73: 109-132. https://doi.org/10.3897/mycokeys.73.51424
Figure 2 Trichoderma lentinulae (CGMCC 3.19847). Cultures at 25 °C after 3 days (A on PDA B on CMDC on SNA) D conidiation pustules on CMD after 10 days E conidiation pustules on CMD after 10 d F conidiophores G–I Conidiophores and phialides J conidia K–M chlamydospores. Scale bars: 25 µm (F); 10 µm (G–M).
Figure 2 from: Piwowarczyk R, Schneider AC, Góralski G, Kwolek D, Denysenko-Bennett M, Burda A, Ruraż K, Joachimiak AJ, Pedraja ÓS (2021) Phylogeny and historical biogeography analysis support Caucasian and Mediterranean centres of origin of key holoparasitic Orobancheae (Orobanchaceae) lineages. PhytoKeys 174: 165-194. https://doi.org/10.3897/phytokeys.174.62524
Figure 2 Rooted Maximum Likelihood phylogenetic tree constructed using plastid trnL–trnF spacer sequences. As an outgroup, Lindenbergia sinaica was used. Numbers near branches show ultrafast bootstrap values (values ≥ 75 are shown). The bar represents the amount of genetic change (nucleotide substitutions per site) A summary of backbone (generic) relationships BPhelipanche clade COrobanche clade. Species names, the country of origin, host species (if available) and GenBank number are included on the phylogeny tip labels.
Figure 3 from: Piwowarczyk R, Schneider AC, Góralski G, Kwolek D, Denysenko-Bennett M, Burda A, Ruraż K, Joachimiak AJ, Pedraja ÓS (2021) Phylogeny and historical biogeography analysis support Caucasian and Mediterranean centres of origin of key holoparasitic Orobancheae (Orobanchaceae) lineages. PhytoKeys 174: 165-194. https://doi.org/10.3897/phytokeys.174.62524
Figure 3 Historical biogeography of tribe Orobancheae, reconstructed using a dispersal-extinction-cladognesis model implemented in RevBayes (maximum likelihood topology, maximum clade credibility branch lengths). Coloured circles at tips represent the current biogeographical range of each sampled taxon. Circles on each node represent the reconstructed ancestral area of the most recent common ancestor of the two daughter lineages, while circles on either side of the node show the reconstructed areas immediately following cladogenesis. Circle size is proportional to posterior probability. Each colour represents a different biogeographical region or combination of regions as indicated by the map and legend to the left of the chronogram. Tip labels for Cistanche follow nomenclature of Ataei et al. (2020). Asterisks indicate names proposed by Ataei (2017) but not yet validly published.
Figure 5 from: Gu X, Wang R, Sun Q, Wu B, Sun J-Z (2020) Four new species of Trichoderma in the Harzianum clade from northern China. MycoKeys 73: 109-132. https://doi.org/10.3897/mycokeys.73.51424
Figure 5 Trichoderma zelobreve (CGMCC 3.19695). Cultures at 25 °C after 3 days (A on PDA B on CMDC on SNA) D conidiation pustules on CMD after 10 days E conidiation pustules on SNA after 10 d F conidiophores G, I conidiophores and phialides H phialides with conidia J conidia. Scale bars: 25 µm (F); 10 µm (G–J).
Figure 8 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 8 Embrikstrandia unifasciata (Ritsema, 1896): dorsal (A) and lateral (B) views of specimen observed on Coloane Heights on17 Jun 2020 (photographs: LC).
Figure 6 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 6 Cephalallus unicolor unicolor (Gahan, 1906): dorsal (A) and lateral (B) views of specimens observed on Great Taipa (11 Apr 2019) and Coloane Village (1 Apr 2020), respectively (photographs: LC).
Figure 52 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 52 Glenea (Stiroglenea) cantor cantor (Fabricius, 1787): dorsal (A) and lateral (B) views of specimens observed on Coloane Heights on 23 Sep 2020 and 15 Sep 2019, respectively (photographs: A LC B Eric Kwan).
Figure 50 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 50 Pterolophia consularis (Pascoe, 1866): dorsal (A) and lateral (B) views of specimen observed at Coloane Village on 1 Jun 2020 (photographs: LC).
Figure 49 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 49 Pterolophia kaleea inflexa Gressitt, 1940: dorsal (A) and lateral (B) views of specimen observed on Great Taipa Hill on 21 May 2019 (photographs: LC).
Figure 5 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 5 Aegolipton marginale (Fabricius, 1775): dorsal (A) and lateral (B) views of specimens observed on Guia Hill (12 May 2019) and Coloane Village (14 May 2020), respectively (photographs: LC).
Figure 54 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 54 Oberea walkeri Gahan, 1894: dorsal (A) and lateral (B) views of specimens observed on Great Taipa Hill (9 May 2019) and on Coloane Heights (28 Apr 2019), respectively (photographs: LC).
Figure 48 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 48 Prosoplus bankii (Fabricius, 1775): dorsal (A) and lateral (B) views of specimens observed at Coloane Village on 27 May 2020 and 22 May 2020, respectively (photographs: LC).
Figure 47 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 47 Mispila tholana (Gressitt, 1940): dorsal (A) and lateral (B) views of specimens observed on the Coloane Heights on 28 Apr 2019 and on 18 Jun 2020, respectively (photographs: A LC B Kit Chang).
Figure 46 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 46 Desisa subfasciata (Pascoe, 1862): dorsal (A) and lateral (B) views of specimens observed on the Coloane Heights on 16 May 2020 and on 24 May 2020, respectively (photographs: A Kisu Wong B LC).
Figure 51 from: Lin M-Y, Perissinotto R, Clennell L (2021) Census of the longhorn beetles (Coleoptera, Cerambycidae and Vesperidae) of the Macau SAR, China. ZooKeys 1049: 79-161. https://doi.org/10.3897/zookeys.1049.65558
Figure 51 Pterolophia (Hylobrotus) annulata (Chevrolat, 1845): dorsal (A) and lateral (B) views of specimen observed at Coloane Village on 30 Apr 2020 (photographs: LC).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.