Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer
GEO Series GSE234658. human gammaherpesvirus 4. 16 samples. Type: Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of CTCF and BHLHe40 binding in HeLa-S3 cells
GEO Series GSE137848. Homo sapiens. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The N-terminal dimerization domains of human and Drosophila CTCF have similar functionality
GEO Series GSE237742. Drosophila melanogaster. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Nucleosome dynamics specifies genome-wide binding of the male germ cell gene regulator CTCFL and of CTCF
GEO Series GSE34093. Mus musculus. 13 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection [III]
GEO Series GSE138645. Mus musculus. 272 samples. Type: Other.
Expression data from P7 mouse cerebral cortex and hippocampus -CTCF Nex-Cre mediated conditional knockout
GEO Series GSE38673. Mus musculus. 14 samples. Type: Expression profiling by array.
CTCF couples long-range loop extrusion and diffusion to mediate a diverse Igk repertoire [ChIP-Seq]
GEO Series GSE287935. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation I
GEO Series GSE231626. Mus musculus; Mus spretus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF-VC.BG3.CP190_RNAi
GEO Series GSE32781. Drosophila melanogaster. 4 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Jpx RNA regulates CTCF anchor site selection and formation of chromosome loops
GEO Series GSE144056. Mus musculus. 64 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Loss of CTCF reveals basic properties of post-mitotic epigenomes and induces heart failure [RNA-seq]
GEO Series GSE96690. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters [Hi-C]
GEO Series GSE157136. Mus musculus. 8 samples. Type: Other.
CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning [ChIP-Seq]
GEO Series GSE142779. Mus musculus. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SNP array data for Wilms Tumor harboring de novo germline mutation in CTCF
GEO Series GSE193017. Homo sapiens. 1 samples. Type: Genome variation profiling by genome tiling array; Genome variation profiling by SNP array; SNP genotyping by SNP array.
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation [Capture-C]
GEO Series GSE263636. Homo sapiens. 8 samples. Type: Other.
mRNA-seq in human 293T HEK cells in the presence (shScr) or absence of HSF1 (shHSF1) or CTCF (shCTCF).
GEO Series GSE155541. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Increased RNA Polymerase Activity at CTCF binding sites on the Epstein Barr Virus Genome During Reactivation from Latency
GEO Series GSE188584. Homo sapiens. 23 samples. Type: Expression profiling by high throughput sequencing.
Hoxblinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia [Hi-C]
GEO Series GSE269218. Mus musculus. 5 samples. Type: Other.
Myeloid leukemia dependency MYNRL15 exemplifies class of CTCF-bound lncRNA loci
GEO Series GSE172240. Homo sapiens. 59 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
H3K9 trimethylation in active compartments optimizes stimulus-regulated transcription by restricting usage of CTCF sites in SINE-B2 repeats [RNA-Seq]
GEO Series GSE189974. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.