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Dataset results
423 results for “t haplotype”
FIGURE 4 in High haplotype diversity in a microendemic Malagasy gecko species, Lygodactylus mirabilis (Pasteur, 1962)
FIGURE 4: Mismatch distribution graph of the 27 mtDNA sequences (1251 bp, cytochrome b and 16S rRNA genes) in L. mirabilis. The solid line with diamonds represents the observed distribution curve and the diamonds are the relative frequencies of nucleotide differences between pair of individuals. The tick solid line represents the distribution expected from an expanding population. Dashed lines indicate the 95% confidence interval. Additional information can be found in the Materials and Methods.
Risk Burden of Lipoprotein Metabolic Gene Haplotypes
ClinicalTrials.gov study NCT00090441. IPD Sharing: Not stated. Countries: 0. Publications: 0.
In-Vitro Studies in Depletion of Haplotype Mismatched Alloreactive T Cells
ClinicalTrials.gov study NCT00731705. IPD Sharing: Not stated. Countries: 0. Publications: 0.
Microarray expression analysis of PRF1 (perforin 1) haplotypes in patients with primary progressive multiple sclerosis
GEO Series GSE23205. Homo sapiens. 10 samples. Type: Expression profiling by array.
Physiological role and mechanisms of action for a long noncoding haplotype region [Hi-C]
GEO Series GSE284940. Homo sapiens. 4 samples. Type: Other.
The impact of a drug transporter ABCG2 haplotype in molecular response of chronic myelogenous leukemia patients is modulated by imatinib dose
GEO Series GSE52107. Homo sapiens. 355 samples. Type: SNP genotyping by SNP array.
Towards the DNA methylation haplotype map of 11 common solid cancers
GEO Series GSE212391. Homo sapiens. 110 samples. Type: Methylation profiling by high throughput sequencing.
De novo enhancer function in divergent hominin haplotypes
GEO Series GSE212159. synthetic construct; Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing; Other.
Intraspecific sequence variation and complete haplotype-resolved assemblies refine the identification of rapidly evolving regions in humans
GEO Series GSE311407. Mus musculus; Homo sapiens; Escherichia coli. 7 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome profile Carnegie Stage 22 gut of different RET haplotypes
GEO Series GSE111341. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Dissecting Agronomically Favorable Genotypes in Temperate Japonica Rice via Haplotype Analysis of a Japan-MAGIC Population
GEO Series GSE315158. Oryza sativa. 200 samples. Type: Expression profiling by high throughput sequencing.
Potato psyllids mount distinct gut responses upon infection with each of the two ‘Candidatus Liberibacter solanacearum’ haplotypes
GEO Series GSE206877. Bactericera cockerelli. 18 samples. Type: Expression profiling by high throughput sequencing.
Whole-genome definitive haplotypes of SNPs and CNVs determined by genotyping duplicated haploid genomes
GEO Series GSE54948. Homo sapiens. 97 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Dataset related to the article: "BPIFB4 and its longevity-associated haplotype protect from cardiac ischemia in humans and mice"
<p>Long-living individuals (LLIs) escape age-related cardiovascular complications until the very last stage of life. Previous studies have<br>shown that a Longevity-Associated Variant (LAV) of the BPI Fold Containing Family B Member 4 (BPIFB4) gene correlates with an<br>extraordinarily prolonged life span. Moreover, delivery of the LAV-BPIFB4 gene exerted therapeutic action in murine models of<br>atherosclerosis, limb ischemia, diabetic cardiomyopathy, and aging. We hypothesize that downregulation of BPIFB4 expression<br>marks the severity of coronary artery disease (CAD) in human subjects, and supplementation of the LAV-BPIFB4 protects the heart<br>from ischemia. In an elderly cohort with acute myocardial infarction (MI), patients with three-vessel CAD were characterized by<br>lower levels of the natural logarithm (Ln) of peripheral blood BPIFB4 (p = 0.0077). The inverse association between Ln BPIFB4 and<br>three-vessel CAD was confirmed by logistic regression adjusting for confounders (Odds Ratio = 0.81, p = 0.0054). Moreover, in<br>infarcted mice, a single administration of LAV-BPIFB4 rescued cardiac function and vascularization. In vitro studies showed that LAVBPIFB4<br>protein supplementation exerted chronotropic and inotropic actions on induced pluripotent stem cell (iPSC)-derived<br>cardiomyocytes. In addition, LAV-BPIFB4 inhibited the pro-fibrotic phenotype in human cardiac fibroblasts. These findings provide a<br>strong rationale and proof of concept evidence for treating CAD with the longevity BPIFB4 gene/protein.</p>
Haplotype-Resolved Analysis of the Filaggrin Gene Elucidates its Complex Role in Human Adaptation and Disease
GEO Series GSE316840. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Non-invasive prenatal paternity testing by analysis of Y-chromosome mini-STR haplotype using next-generation sequencing
GEO Series GSE186434. Homo sapiens. 14 samples. Type: Other.
Combination testing using a single MSH5 variant alongside HLA haplotypes improves coeliac disease risk prediction in the Polish population
GEO Series GSE65424. Homo sapiens. 15 samples. Type: SNP genotyping by SNP array.
Genome-wide haplotyping of human single cells
GEO Series GSE17318. Homo sapiens. 34 samples. Type: Genome variation profiling by SNP array.
haplotype results for publication
Open the record for dataset details and reuse information.
The haplotype-resolved genome assemblies of the hybrid Pinot Noir
<p>The haplotype-resolved genome assemblies of the hybrid Pinot Noir, PN1(495.185MB) and PN2(489.609 MB).<br> To validate the quality of our assembly, K-mer and BUSO0 were conducted. We used K-mer to evaluate genomic heterozygosity, estimated 1.43%. BUSCO to evaluate genomic completeness about 98.3% in PN1 of thecore conserved plant genes were found complete in the genome assembly. For genome annotation, the number of genesidentified by the genome is similar, more than 33,803 genes were found for Pinot Noir, PN1<br> The PN1 genome assembly: PNhap1.v1. fa<br> The PN1gene annotation: PNhap1.v1. gff3<br> The PN1 TE annotation: PNhap1_TE.v1.gff<br> The PN2 genome assembly: PNhap2.v1. fa</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.