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2,885 results for “transfers”
Drug-membrane transfer free energies for coarse-grained trimers and tetramers
<p>The databases contain drug-membrane transfer free energies for coarse-grained Martini trimers and tetramers inserted in a one-component DOPC membrane. We also provide a database of atomistic-resolution compounds mined from the GDB and that map to trimers.</p>
Research data supporting "Investigating the accumulation and translocation of titanium dioxide nanoparticles with different surface modifications in static and dynamic human placental transfer models"
<p>Research data supporting the publication: Aengenheister, L. et al., 2019, "Investigating the accumulation and translocation of titanium dioxide nanoparticles with different surface modifications in static and dynamic human placental transfer models", Eur J Pharm Biopharm. https://doi.org/10.1016/j.ejpb.2019.07.018</p>
An evolved artificial radical cyclase enables the construction of bicyclic terpenoid scaffolds via an H-atom transfer pathway
<p>Data underlying the figures/tables of the publication "An evolved artificial radical cyclase enables the construction of bicyclic terpenoid scaffolds via an H-atom transfer pathway" <em>Nat. Chem.</em> (2024). https://doi.org/10.1038/s41557-024-01562-5</p>
FIGURE 4 in Challenges encountered during acid resin transfer preparation of fossil fish from Monte Bolca, Italy
FIGURE 4. NHMUK PV P1990 after complete preparation.
FIGURE 5 in Challenges encountered during acid resin transfer preparation of fossil fish from Monte Bolca, Italy
FIGURE 5. Oxford University Museum specimen CM4312 Blochius longirostris, set in Synolite 0328-A-1.
Magnetic particles (Fe3O4) magnify ion transfer processes at the electrified liquid-liquid interface. Case study: Levamisole detection.
<p>Data set for the publication Magnetic particles (Fe3O4) magnify ion transfer processes at the electrified liquid-liquid interface. Case study: Levamisole detection. </p>
Raw Data and Codes for the Article "Strain-Affected Ferroelastic Domain Walls in RbMnFe Charge-Transfer Materials undergoing collective Jahn-Teller Distortion"
<p>Dataset for the article "Strain-Affected Ferroelastic Domain Walls in RbMnFe Charge-Transfer Materials undergoing collective Jahn-Teller Distortion", containing:</p> <ul> <li>The data and the codes used to generate the figures</li> </ul>
PMF-LP: the first 10 m plastic-mulched farmland distribution map (2019-2021) in the Loess Plateau of China generated using training sample generation and classifier transfer method
<p>This dataset provides 10-m resolution plastic-mulched farmland distribution map in the Loess Plateau of China from 2019 to 2021</p> <p>*** The data file is in ".tif" format</p> <p>*** Temporal resolution: Annually</p> <p>*** Temporal coverage: 2019-2021</p> <p>*** Pixel size: 10 m</p> <p>*** Projection information: EPSG: 4326</p> <p>*** Values: 1 denotes plastic-mulched farmland (PMF) and 0 denotes non-plastic-mulched farmland (non-PMF)</p>
Datasets and Code: Revealing the Role of Redox Reaction Selectivity and Mass Transfer in Current–Voltage Predictions for Ensembles of Photocatalysts
<ul> <li>Raw datasets (.mat and .fig files) and codes (.mlx and .m files) used in our manuscript of the same title. </li> <li>Figure numbers correspond with the figure numbers in the corresponding manuscript. <ul> <li>Figure 4: Effects of kinetic parameters on Solar-to-chemical (STC) efficiencies and reaction selectivity</li> <li>Figure 5: Solar-to-chemical (STC) efficiencies for a model incorporating competing undesired redox reactions implemented for different redox shuttle pairs</li> <li>Figure 7: Solar-to-chemical efficiencies for an ensemble of light absorbers</li> <li>Figure 8: Maximum solar-to-chemical (STC) efficiencies and corresponding number of light absorbers as a function of asymmetry factors in limiting current density for redox shuttle reduction</li> <li>Figure 9: Solar-to-chemical efficiencies for an increasing number of light absorbers for different total absorptance values (99%, 75%, 50%).</li> <li>Figure 10: Qualitative comparisons between experimental measurements and model predictions for a photocatalytic suspension reactor</li> </ul> </li> <li>The main piece of the code developed is provided as an interactive .mlx file; not all subfunction calls within the main code is included, and can be shared upon reasonable request via email from the lead (luisab@umich.edu) and the corresponding authors (rbchan@umich.edu) of this paper. </li> </ul> <p> </p>
Trapped-Ion Quantum Simulation of Electron Transfer Models with Tunable Dissipation
<p>This package includes the data, the theory, and the source code to plot both in Mathematica to reproduce the figures of the paper.</p>
Efficient parameterization of transferable Atomic Cluster Expansion for water
<p>This collection contains files associated with Journal of Chemical Theory and Computation. "Efficient parameterization of transferable Atomic Cluster Expansion for water" (2024) paper:</p> <p>- ACE potentials for water.</p> <p>-Active set inverted (ASI) for the ACE potential</p> <p>- Training dataset that was used for fitting Atomic Cluster Expansion potential.</p>
Identifying routes for transferring spin polarization from parahydrogen to protic solvents
<p>NMR data and MATLAB codes supporting the publication '<strong>Identifying routes for transferring spin polarization from parahydrogen to protic solvents'</strong>. The NMR_data file enables to reconstruct the PTF profiles, the solvent lifetime calculations, and the molar polarization values for each solution. The SABRE_2D data file contains the 2D-OPSY-COSY sequence for elucidation of the catalyst structure 2a-d. The Codes folder contains the MATLAB codes for construction of the PTF profiles and the solvent lifetime plots. The PDF file contains the specific details on which data is used for which figure. </p> <p> </p> <p> </p>
Dataset: Toxicity, transfer and metabolization of the pyrethroid insecticides cypermethrin and deltamethrin by reared black soldier fly larvae
Open the record for dataset details and reuse information.
Safety and transfer of veterinary drugs from substrate to black soldier fly larvae
<p>Dataset belonging to Safety and transfer of veterinary drugs from substrate to black soldier fly larvae; https://doi.org/10.1016/j.animal.2024.101214</p> <p>Dataset contains larval weight and survival, and concentrations of the applied veterinary drugs and respective metabolites in start substrate, larvae and end substrate (frass/residual material). </p>
Experimental and simulated data for the article "Reassessing the role and lifetime of Qx in the energy transfer dynamics of Chlorophyll a"
<p>The .zip file contains:</p> <ul> <li>Linear absorption spectra of Chl a in EtOH, acetone, and benzonitrile (BN)</li> <li>Low-temperature emission and excitation anisotropy datasets of Chl a in isopropanol</li> <li>Transient absorption (TA) datasets of Chl a in EtOH, acetone, and BN after B- and Q-band excitation (including pump spectra)</li> <li>Transient absorption anisotropy (TAA) datasets of Chl a in acetone after B-band excitation (including a pump spectrum)</li> <li>Optimized geometries for the Q-band ESA calculations</li> <li><span>Geometries for normal modes used for PES construction</span></li> </ul>
Processed data for Evidence of horizontal gene transfer and environmental selection impacting antibiotic resistance evolution in soil-dwelling Listeria
<p>Processed/source data for the manuscript Evidence of horizontal gene transfer and environmental selection impacting antibiotic resistance evolution in soil-dwelling <em>Listeria</em>.</p>
Figure 4 in A new transfer in the genus Pachomius Peckham & Peckham (Araneae: Salticidae: Aelurillini)
Figure 4. Known distribution of the nigrus species group of Pachomius (Salticidae: Salticinae: Aelurillini: Freyina) in northern South America. Map by Mapswire.com (https://mapswire.com) used and modified under a Creative Commons Attribution 4.0 International (CC BY 4.0) License.
Figures 1-3 in A new transfer in the genus Pachomius Peckham & Peckham (Araneae: Salticidae: Aelurillini)
Figures 1-3. Pachomius lehmanni (Strand, 1908), male holotype (SMF 2377-141). 1, Left pedipalp, ventral view, detail of the bulb. 2, Same, retrolateral view. 3, Dorsal view. Abbreviations: Cy = cymbium; e = embolus; pRL = proximal retrolateral lobe of the tegular basal division; RTA = retrolateral tibial apophysis; Spe = spermophore.
Distinct synaptic transfer functions in same-type photoreceptors
<p>Many sensory systems use ribbon-type synapses to transmit their signals to downstream circuits. The properties of this synaptic transfer fundamentally dictate which aspects in the original stimulus will be accentuated or suppressed, thereby partially defining the detection limits of the circuit. Accordingly, sensory neurons have evolved a wide variety of ribbon geometries and vesicle pool properties to best support their diverse functional requirements. However, the need for diverse synaptic functions does not only arise across neuron types, but also <em>within</em>. Here we show that UV-cones, a single type of photoreceptor of the larval zebrafish eye, exhibit striking differences in their synaptic ultrastructure and consequent calcium to glutamate transfer function depending on their location in the eye. We arrive at this conclusion by combining serial section electron microscopy and simultaneous "dual-colour" 2-photon imaging of calcium and glutamate signals from the same synapse <em>in vivo</em>. We further use the functional dataset to fit a cascade-like model of the ribbon synapse with different vesicle pool sizes, transfer rates and other synaptic properties. Exploiting recent developments in simulation-based inference, we obtain full posterior estimates for the parameters and compare these across different retinal regions. The model enables us to extrapolate to new stimuli and to systematically investigate different response behaviours of various ribbon configurations. We also provide an interactive, easy-to-use version of this model as an online tool. Overall, we show that already on the synaptic level of single neuron types there exist highly specialized mechanisms which are advantageous for the encoding of different visual features.</p>
Horizontal transfer and subsequent explosive expansion of a DNA transposon in sea kraits (Laticauda)
<p><strong>Abstract</strong></p> <p>Transposable elements (TEs) are self replicating genetic sequences and are often described as important “drivers of evolution”. This driving force is because TEs promote genomic novelty by enabling rearrangement, and through exaptation as coding and regulatory elements. However, most TE insertions will be neutral or harmful, therefore host genomes have evolved machinery to supress TE expansion. Through horizontal transposon transfer (HTT) TEs can colonise new genomes, and since new hosts may not be able to shut them down, these TEs may proliferate rapidly. Here we describe HTT of the <em>Harbinger-Snek</em> DNA transposon into sea kraits (<em>Laticauda</em>), and its subsequent explosive expansion within <em>Laticauda</em> genomes. This HTT occurred following the divergence of <em>Laticauda</em> from terrestrial Australian elapids ~15-25 Mya. This has resulted in numerous insertions into introns and regulatory regions, with some insertions into exons which appear to have altered UTRs or added sequence to coding exons. <em>Harbinger-Snek</em> has rapidly expanded to make up 8-12% of <em>Laticauda</em> spp. genomes; this is the fastest known expansion of TEs in amniotes following HTT. Genomic changes caused by this rapid expansion may have contributed to adaptation to the amphibious-marine habitat.</p> <p><strong>Dataset</strong></p> <p>The deposited dataset contains scripts used in analysis, GFFs of the <em>Laticauda </em>genome gene annotations produced using Liftoff, repeat sequences of all <em>Harbinger-Snek variants and Harbinger-Snek</em>-like TEs, repeat library used in RepeatMasker repeat annotation, repeat annotation of <em>Laticauda, Notechis</em> and <em>Pseudonaja</em> genomes, screenshots of IGV showing RNASeq reads mapped to gene exons and UTRs containing <em>Harbinger-Snek</em> insertions, and all phylogenetic trees and the sequence data used in generating them.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.