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Figure 7 from: Rakotoarison A, Scherz MD, Köhler J, Ratsoavina FM, Hawlitschek O, Megson S, Vences M, Glaw F (2020) Frogs of the genus Platypelis from the Sorata massif in northern Madagascar: description of a new species and reports of range extensions. Zoosystematics and Evolution 96(1): 263-274. https://doi.org/10.3897/zse.96.47088
Figure 7 Photographs in life of Platypelis tsaratananaensis from the Sorata Massif. a, bZSM 5655/2012 (FGZC 3648); c, dZSM 5654/2012 (FGZC 3647); e, fZSM 5656/2012 (FGZC 3649).
Figure 2 from: Rakotoarison A, Scherz MD, Köhler J, Ratsoavina FM, Hawlitschek O, Megson S, Vences M, Glaw F (2020) Frogs of the genus Platypelis from the Sorata massif in northern Madagascar: description of a new species and reports of range extensions. Zoosystematics and Evolution 96(1): 263-274. https://doi.org/10.3897/zse.96.47088
Figure 2 Approximate geographical location of occurrence records of the focal Platypelis species in our study (modified from Rakotoarison et al. 2012; showing only records for which molecular data are available). The map indicates elevation (green, lowest; red-yellow, highest). Localities and species occurring at these sites are as follows: (1–4) campsites on the Mangindrano-Maromokotro trail, Tsaratanana Massif (Antevialambazaha, Matsabory Maiky, Bepia, Andranomadio); (5) Bemanevika forest; (6) Andrevorevo; (7) Marojejy; (8) Sorata; (9) Andravory. Occurrence records of P. alticola (at sites 1–3, and a deep genetic lineage at 8), P. tsaratananaensis (at sites 1–3, and deep genetic lineages at 7 and 8), P. olgae (between sites 3 and 4), P. laetus sp. nov. and P. Ca12 (site 8), and P. sp. Ca13 (site 9).
Figure 4 from: Rakotoarison A, Scherz MD, Köhler J, Ratsoavina FM, Hawlitschek O, Megson S, Vences M, Glaw F (2020) Frogs of the genus Platypelis from the Sorata massif in northern Madagascar: description of a new species and reports of range extensions. Zoosystematics and Evolution 96(1): 263-274. https://doi.org/10.3897/zse.96.47088
Figure 4 Preserved holotype of Platypelis laetus sp. nov., ZSM 5652/2012 (FGZC 3761), in dorsal and ventral view.
Figure 6 from: Rakotoarison A, Scherz MD, Köhler J, Ratsoavina FM, Hawlitschek O, Megson S, Vences M, Glaw F (2020) Frogs of the genus Platypelis from the Sorata massif in northern Madagascar: description of a new species and reports of range extensions. Zoosystematics and Evolution 96(1): 263-274. https://doi.org/10.3897/zse.96.47088
Figure 6 Photographs in life of Platypelis alticola from the Sorata Massif. a, bZSM 1615/2012 (FGZC 3669); c Young tadpoles found in the same bamboo hole as ZSM 1615/2012; d, e UADBA-A (FGZC 3652).
Figure 3 from: Rakotoarison A, Scherz MD, Köhler J, Ratsoavina FM, Hawlitschek O, Megson S, Vences M, Glaw F (2020) Frogs of the genus Platypelis from the Sorata massif in northern Madagascar: description of a new species and reports of range extensions. Zoosystematics and Evolution 96(1): 263-274. https://doi.org/10.3897/zse.96.47088
Figure 3 Photographs in life of Platypelis laetus sp. nov. from the Sorata massif: a–cZSM 5652/2012 (FGZC 3761), holotype; d, eZSM 5651/2012 (FGZC 3588), paratype; f, gZSM 5653/2012 (FGZC 3762), paratype; h Eggs and embryos found in the same bamboo hole with the specimens ZSM 5652/2012 and ZSM 5653/2012.
Figure 1 from: Rakotoarison A, Scherz MD, Köhler J, Ratsoavina FM, Hawlitschek O, Megson S, Vences M, Glaw F (2020) Frogs of the genus Platypelis from the Sorata massif in northern Madagascar: description of a new species and reports of range extensions. Zoosystematics and Evolution 96(1): 263-274. https://doi.org/10.3897/zse.96.47088
Figure 1 Molecular differentiation of species of Platypelis, with an emphasis on samples related to P. alticola, P. tsaratananaensis, and P. olgae (the highland cluster, in the gray box). a Maximum Likelihood tree calculated from a 658 bp alignment of the mitochondrial 16S rRNA gene (5ʹ segment of the gene). Numbers at nodes are support values from a bootstrap analysis (1000 replicates) in percent (not shown if below 50%). A sequence of Stumpffia gimmeli was included as the outgroup. For each sample, voucher number and if available, GenBank accession number is given. Samples outside the P. olgae clade (yellow box) that are highlighted in bold are newly sequenced specimens from the Sorata Massif. b Allele (haplotype) network based on 433 bp of the nuclear RAG-1 gene (phased sequences, hence each individual represented with two alleles in the network). In the P. alticola and P. tsaratananaensis clusters, an S marks alleles in samples from Sorata and an M marks samples from Marojejy.
Figure 5 from: Rakotoarison A, Scherz MD, Köhler J, Ratsoavina FM, Hawlitschek O, Megson S, Vences M, Glaw F (2020) Frogs of the genus Platypelis from the Sorata massif in northern Madagascar: description of a new species and reports of range extensions. Zoosystematics and Evolution 96(1): 263-274. https://doi.org/10.3897/zse.96.47088
Figure 5 . Spectrogram and oscillogram of one advertisement call of Platypelis laetus sp. nov. from a call series recorded on 30 November 2012 at the type locality in Sorata, northern Madagascar. Although not unequivocally verifiable, the depicted call most probably was emitted by the male holotype (ZSM 5652/2012).
A review of response rates over time in registry-based studies using patient-reported outcome measures
<p class="Brdtekst1"><b>Objectives</b>: Gain an overview of expected response rates (RRs) to patient-reported outcome measures (PROMs) in clinical quality registry-based studies and long-term cohorts in order to better evaluate the validity of registries and registry-based studies. Examine the trends of RRs over time and how they vary with study type, questionnaire format, and the use of reminders.</p> <p class="Brdtekst1"><b>Design</b>: Literature review with systematic search.</p> <p class="Brdtekst1"><b>Data</b> <b>sources</b>: PubMed, MEDLINE, EMBASE, kvalitetsregistre.no, kvalitetsregister.se, and sundhed.dk.</p> <p class="Brdtekst1"><b>Eligibility criteria</b>: Articles in all areas of medical research using registry-based data or cohort design with at least two follow-up time-points collecting PROMs and reporting RRs. Annual reports of registries including PROMs that report RRs for at least two time-points.</p> <p class="Brdtekst1"><b>Primary outcome measure</b>: Response rates to PROMs.</p> <p class="Brdtekst1"><b>Results</b>: A total of 10 articles, 12 registry reports, and 6 registry articles were included in the review. The overall RR at baseline was 75% ±22.1 but decreased over time. Cohort studies had a markedly better RR (baseline 97% ±4.7) compared to registry-based data at all time points (baseline 72% ±21.8). For questionnaire formats, paper had the highest RR at 86% ±19.4, a mix of electronic and paper had the second highest at 71% ±15.1, and the electronic-only format had a substantially lower RR at 42% ±8.7. Sending one reminder (82% ±16.5) or more than one reminder (76% ±20.9) to non-responders resulted in a higher RR than sending no reminders (39% ±6.7).</p> <p class="Brdtekst1"><b>Conclusions</b>: The large variation and downward trend of RRs to PROMs in cohort and registry-based studies are of concern and should be assessed and addressed when using registry data in both research and clinical practice.</p>
Figure 1 from: Lindon H, Hartley H, Knapp S, M. Monro A, Turland N (2020) XIX International Botanical Congress, Shenzhen: report of the Nomenclature Section, 17th to 21st July 2017. PhytoKeys 150: 1-276. https://doi.org/10.3897/phytokeys.150.50687
Figure 1 The Nomenclature Section of the XIX International Botanical Congress, Shenzhen, China, 20 July 2017. The Bureau of Nomenclature is seated on the front row (left to right): Li Zhang, Yun-Fei Deng (Recorders), Anna M. Monro (Recorders' Assistant), John H. Wiersema (Vice-rapporteur), Nicholas J. Turland (Rapporteur-général), Sandra Knapp (President), Renée H. Fortunato, John McNeill, Werner Greuter, Gideon F. Smith, and Karen L. Wilson (Vice-presidents). – Reproduced by permission of the photographer, Li Zhang, Fairy Lake Botanical Garden.
Insights from scenarios in line with #EUGreenDeal ambitions - data behind the graphs - JRC report
<p>This Excel file contains the data behind the graphs of the following JRC report:</p> <p>Tsiropoulos I., Nijs W., Tarvydas D., Ruiz Castello P., Towards net-zero emissions in the EU energy system by 2050 – Insights from scenarios in line with the 2030 and 2050 ambitions of the European Green Deal, EUR 29981 EN, Publications Office of the European Union, Luxembourg, 2020, ISBN 978-92-76-13096-3, doi:10.2760/081488, JRC118592.</p> <p>The report is downloadable from: https://ec.europa.eu/jrc/en/publication/towards-net-zero-emissions-eu-energy-system-2050 </p>
Data for Science report: Accelerating Water Dissociation in Bipolar Membranes and for Electrocatalysis
<p>All the data for the manuscript (<strong>DOI: 10.1126/science.aaz1487</strong>) in csv format ordered according to figures in main manuscript and supplementary materials. Please reach out to us if you have any questions.</p>
Malthi2015_Report
<p>Malthi provides a nearly unique example of a fully excavated Middle Hellenic (MH) settlement. The excavated remains include a series of houses, storage facilities, entrance ways, and possible public architecture, enclosed by a settlement wall. Malthi is perhaps the first MH site at which a major restructuring of the settlement architecture was observed, as proposed by Valmin. The PIs research focuses on the socio-cultural motivations for the decision to make substantial revisions to the urban layout, as well as impacts on the life of the settlement and the surrounding area. PIs Rebecca Worsham, Prof. Donald Haggis, and Prof. Michael Lindblom collaborated with SPARC researchers to produce an accurate and analysis-ready plan of the exposed standing remains and a digital elevation model (DEM) of the settlement at Malthi, using a combination of scanning and structure from motion techniques. </p> <p>This work was embedded in a larger project, and aimed to reconsider the architecture of the site including prior identifications of room types (by Valmin), and to attempt to identify coherent buildings. This improved survey, mapping and interpretation exercise was intended to support a rethinking about the settlement’s organization, and re-organization, as a whole. The production of a local DEM of the site was intended to aid in a consideration of access routes and forms a starting point for establishing the role of Malthi in the larger Soulima Valley network, which may function as a major corridor.</p> <p>This upload contains the report and associated images submitted to SPARC of the Malthi project undertaken in 2015.</p>
d5-7-city-impact-analysis-report
<p>This dataset contains the report of each ClairCity case study part of the deliverable D5.7, which collects all results of the full impact analysis, methodological approach and data sources.</p> <ul> <li><strong>D5.7 - City Impact Analysis Report - Methodology</strong><br> file: d5.7-city-impact-analysis-report.pdf<br> The Deliverable 5.7 collects all results of the full impact analysis, methodological approach and data sources.</li> <li><strong>D5.7 - Bristol</strong><br> file: d5.7-bristol.pdf<br> D5.7 Bristol final sub-report</li> <li><strong>D5.7 - Amsterdam</strong><br> file: d5.7-amsterdam.pdf<br> D5.7 Amsterdam final sub-report</li> <li><strong>D5.7 - Ljubljana</strong><br> file: d5.7-ljubljana.pdf<br> D5.7 Ljubljana final sub-report</li> <li><strong>D5.7 - Sosnowiec</strong><br> file: d5.7-sosnowiec.pdf<br> D5.7 Sosnowiec final sub-report</li> <li><strong>D5.7 - Liguria region</strong><br> file: d5.7-liguria-region.pdf<br> D5.7 Liguria Region final sub-report</li> <li><strong>D5.7 - Aveiro region</strong><br> file: d5.7-aveiro-region.pdf<br> D5.7 Aveiro Region final sub-report</li> </ul>
Caballete2015_Report
<p>Caballete is a Late Archaic (3000 - 1800 BC) site located in a valley off the north bank of the Fortaleza River, approximately 8km from the Pacific coast. It consists of multiple lesser mounds and a single larger mound. One of the mounds sits as an outlier to the southeast while the other five form a U-shaped pattern on the terrace. The outlier is believed to be the earliest attempt at mound construction on the site. Three of the other mounds are associated with sunken circular plazas, one of which is outlined by <em>huancas</em>, or large standing stones.</p> <p>The aim of this project was to identify buried architecture for subsequent, targeted excavation at a Late Archaic ceremonial site in Peru. Two of the mounds (B and C) were surveyed using GPR, photogrammetry and magnetometry (Mound B only), with surveys occurring on the top and flank of Mound B. A low mound referred to as "Center Area" and the sunken circular plaza associated with the <em>huancas </em>and Mound A (the principal mound of Caballete) were surveyed with GPR, magnetometry and photogrammetry as well. Finally, a campsite area (20 x 40m) located to the northwest of the site's U-shaped configuration of features was surveyed using magnetometry. The site contains characteristics of typical campsite areas and, due to the ephemeral nature of campsites and general lack of permanent structures, was not surveyed with GPR or photogrammetry.</p> <p>This upload contains the report for the Caballete project produced shortly after the field season in 2015.</p>
Citizens Assemble: A study on the impact of climate reporting in the Irish media 'before', 'during' and 'after' the Citizens' Assembly on 'How the State can make Ireland a leader in tackling climate change'.
<p>This dataset contains the .csv file with raw coded data from 594 articles in four Irish media publications (Coded_2020.csv), the .csv file containing all 594 articles (All articles in full (594).csv) along with the associated R Notebook (Citizens Assemble.Rmd) allowing those interested to download the R code. File also contains the images that are used in the R document, and a pdf version of the R output (<a href="https://zenodo.org/api/files/069eeaa7-f82f-4806-a477-9dd1b494c990/Citizens%20Assembly%20R%20Output%20pdf%20format.pdf">Citizens Assembly R Output pdf format.pdf</a>). These files are associated with a manuscript titled: Citizens Assemble: A study on the impact of climate reporting in the Irish media ‘before’, ‘during’ and ‘after’ the Citizens’ Assembly on ‘How the State can make Ireland a leader in tackling climate change’.</p>
Data accompanying the Registered Report: Does unfairness sound wrong? A cross-domain investigation of expectations in music and social decision-making.
<p><b>This study was interested in investigating the existence of a shared psychological mechanism for the processing of expectations across domains. The literature on music and language shows that violations of expectations produce similar neural responses and violating the expectation in one domain may influence the processing of stimuli in the other domain. Like music and language, our social world is governed by a system of inherent rules or norms, such as fairness. The study therefore aimed to draw a parallel to the social domain and investigate whether a manipulation of melodic expectation can influence the processing of higher-level expectations of fairness. Specifically, we aimed to investigate whether the presence of an unexpected melody enhances or reduces participants' sensitivity to the violations of fairness and the behavioural reactions associated with these. We embedded a manipulation of melodic expectation within a social decision-making paradigm, whereby musically expected and unexpected stimuli will be simultaneously presented with fair and unfair divisions in a third-party altruistic punishment game. Both behavioural and EEG responses were recorded. Results from the pre-planned analyses show that participants are less likely to punish when the melodic stimuli are more unexpected and that violations of fairness norms elicit MFN-life effects. However, since no significant interactions between melodic expectancy and fairness of the division were found, results fail to provide evidence of a shared mechanism for the processing of expectations. Exploratory analyses show two additional effects: i) unfair divisions elicit an early attentional component (P2), likely associated with stimulus saliency, and ii) mid-value divisions elicit a late MFN-like component, likely reflecting stimulus ambiguity. Future studies could build on these results to further investigate the effect of the cross-domain influence of music on the processing of social stimuli on these early and late components.</b></p>
First report of electron measurements during a Europa footprint tail crossing
<p>This is the repository for the data files for Figures 1, 2, and 3 of the manuscript "First report of electron measurements during a Europa footprint tail crossing" by F. Allegrini et al.</p> <p> </p> <p>Abstract:</p> <p>We report the first in situ observations of electron measurements at a Europa footprint tail (FPT) crossing in the auroral region. During its 12<sup>th</sup> science perijove pass, Juno crossed magnetic field lines connected to Europa’s footprint tail. We find that electrons in the range ~0.4 to ~25 keV, with a characteristic energy of 3.6 ± 0.5 keV, precipitate into Jupiter’s atmosphere to create the footprint aurora. The energy flux peaks at ~36 mW/m<sup>2</sup>, while the peak ultraviolet (UV) brightness is estimated at 37 kR. We estimate the peak electron density and temperature to be 17.3 cm<sup>−3</sup> and 1.7 ± 0.1 keV, respectively. Using magnetic flux shell mapping, we estimate that the radial width of the interaction at Europa’s orbit spans roughly 3.6 ± 1.0 Europa radii. In contrast to typical Io FPT crossings, the instrument background caused by penetrating energetic radiation (>~5-10 MeV electrons) increased during the Europa FPT crossing.</p> <p> </p>
GastFarm2016_Report
<p>Project Name: Gast Farm<br> Project Location: Iowa, United States<br> Project Date: 2016</p> <p>Gast Farm is a 13-hectare archaeological site located in the Mississippi River valley in southeast Iowa. Gast Farm is one of the largest and best-preserved Woodland sites in the region, with both Middle Woodland (Havana Hopewell, ca. 50 B.C.–A.D. 250) and initial Late Woodland (Weaver, ca. A.D. 350–500) deposits. Additionally, a large mound was once present, and remnants of geometric earthworks also suspected. The PIs research seeks to is to understand the interanal structure and layout of the Woodland communities at Gast Farm, which can contribute to knowledge of Middle and Late Woodland domestic and corporate-ceremonial spheres, i.e., residential as well as sustainable and symbolic communities. PI William Green collaborated with SPARC researcher Adam Barnes to produce orthorectified images and a digital elevation model (DEM) of the Gast Farm site from aerial imagery collected in 1990, using AgiSoft Photoscan. The orthophotos reveal distinct soil discolorations because the original photos were taken after the field had been disked, planted, and rained on, and only a few days after row crops (corn) had emerged. Soil discolorations indicate large-scale cultural features such as middens (dark colors) and a mound and possible geometric earthworks (light colors). The orthophotos also show a series of narrow linear discolorations exactly 10 m apart that represent the paths created during the controlled surface collection that was underway at the time the photos were taken. The DEM produced by orthophoto rectification has a 50-cm resolution, which is unfortunately is not sufficiently sensitive to detect possible mound or earthwork features after they have been leveled and plowed.</p> <p>This work is part of a larger 2016-2018 project at Gast Farm, which combined GIS development, aerial imagery analysis, and geophysical survey. Defining community organization, locating any subsurface traces of the mound, and determining the reality of the suspected earthwork constituted key research objectives. Over the course of the project, the Gast Farm team (1) identified the Middle Woodland (Havana-Hopewell) community plan, (2) determined no geometric earthworks were present but discovered six additional mounds, and (3) confirmed and expanded the Late Woodland (Weaver) community plan. In the process of obtaining these results, the project also accomplished several methodological advances: it (1) demonstrated the viability of magnetic gradiometry for identifying Woodland residential and mortuary features in Mississippi Valley alluvial fans, (2) showed how to incorporate legacy oblique aerial photography in a georeferenced GIS, (3) indicated the promise of drone-based photogrammetry in identifying cultural features beneath crop cover, and (4) modeled the virtual reconstruction of leveled mounds.</p> <p>Fieldwork and analyses were conducted in 2016-2018 through a grant from a National Geographic Society Committee for Research and Exploration (project 9938-16). This research was also supported by a SPARC Data & Analytics Award. The SPARC Program is based at CAST at the University of Arkansas, and is funded by a generous grant from the National Science Foundation (BCS #1519660). Additional support for project archiving was funded by the SPARC Program in 2020 (BCS #1822110). A Beloit College Keefer Senior Faculty Grant and a developmental leave from Beloit College supplemented the NGS and SPARC support. Research was also aided by effort provided by Beloit College students and individuals at several partner institutions, notably the Midwest Archeological Center of the National Park Service (Lincoln, NE; MWAC), the Office of the State Archaeologist of the University of Iowa (OSA), and Arizona State University. The DigitalGlobe Foundation also provided access to satellite imagery (not included in this archive).</p>
Figure 1 in Report on the Raphitomidae Bellardi, 1875 (Mollusca: Gastropoda: Conoidea) from the China Seas
Figure 1. Species of familyRaphitomidae. (A) Asperdaphne paramoretonica sp. nov. (Holotype SCS, CN L72B-39); (B) Daphnella inangulata sp. nov. (Holotype locality, SCS); (C) Daphnella interrupta Pease, 1860 (SCS, CN 63M-253); (D) Daphnella cf. suluensis Schepman, 1913 (ESC, CN V520A); (E, F) Eucyclotoma cymatodes (Hervier 1897a) (Nansha Islands, CN 93NS8-3; Xisha Islands, CN 58M-1542); (G) Eucyclotoma tricarinata (Kiener 1840) (Xisha Islands, CN 58M-1642); (H) Eucyclotoma sp. (Xisha Islands, CN 58 M–1542–1).
Figure 2 in Report on the Raphitomidae Bellardi, 1875 (Mollusca: Gastropoda: Conoidea) from the China Seas
Figure 2. (A) Asperdaphne perissa (Hedley 1909) (Bohai Gulf, CN 57–033); (B) Daphnella mitrellaformis (Nomura 1940) (ECS, CN V562B-15); (C) Eucyclotoma lactea (Reeve 1843) (Xisha Islands, CN 58 M-1514); (D) Gymnobela ioessa Sysoev, 1997 (SCS, CN V568B-3); (E) *Kuroshiodaphne supracancellata (Schepman 1913) (left: SCS, CN 171; right: holotype, provided by Dr Kilburn R. N., personal communication); (F) Tritonoturris oxyclathrus (Martens 1880) (SCS, CN L67B-8); (G) Tritonoturris scalaris (Hinds 1843) (SCS, RN MBM081112); (H, I) Tritonoturris macandrewi (E. A. Smith 1882) (SCS, CN Q283B-22 and X200b–63).
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.