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9,152
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Dataset results
9,152 results for “Networking”
NMR and HRMS raw data for "Metabolite annotation from knowns to unknowns through knowledge-guided multi-layer metabolic networking"
<p>Raw NMR data and HRMS data for synthesized compounds</p>
Implementation of cell-free biological networks at steady state
<p>Living cells maintain a steady state of biochemical reaction rates by exchanging energy and matter with the environment. These exchanges usually do not occur in in vitro systems, which consequently go to chemical equilibrium. This in turn has severely constrained the complexity of biological networks that can be implemented in vitro. We developed nanoliter-scale microfluidic reactors that exchange reagents at dilution rates matching those of dividing bacteria. In these reactors we achieved transcription and translation at steady state for 30 h and implemented diverse regulatory mechanisms on the transcriptional, translational, and posttranslational levels, including RNA polymerases, transcriptional repression, translational activation, and proteolysis. We constructed and implemented an in vitro genetic oscillator and mapped its phase diagram showing that steady-state conditions were necessary to produce oscillations. This reactor-based approach will allow testing of whether fundamental limits exist to in vitro network complexity.</p>
Supplementary material 3 from: Smirnova L, Mergen P, Groom Q, De Wever A, Penev L, Stoev P, Pe'er I, Runnel V, Camacho A, Vincent T, Agosti D, Arvanitidis C, Bonet F, Saarenmaa H (2016) Data sharing tools adopted by the European Biodiversity Observation Network Project. Research Ideas and Outcomes 2: e9390. https://doi.org/10.3897/rio.2.e9390
List of tested and analyzed data sharing tools (non-exhaustive)
Supplementary material 2 from: Smirnova L, Mergen P, Groom Q, De Wever A, Penev L, Stoev P, Pe'er I, Runnel V, Camacho A, Vincent T, Agosti D, Arvanitidis C, Bonet F, Saarenmaa H (2016) Data sharing tools adopted by the European Biodiversity Observation Network Project. Research Ideas and Outcomes 2: e9390. https://doi.org/10.3897/rio.2.e9390
Definitions and concepts in the context of the main paper.
Supplementary material 1 from: Smirnova L, Mergen P, Groom Q, De Wever A, Penev L, Stoev P, Pe'er I, Runnel V, Camacho A, Vincent T, Agosti D, Arvanitidis C, Bonet F, Saarenmaa H (2016) Data sharing tools adopted by the European Biodiversity Observation Network Project. Research Ideas and Outcomes 2: e9390. https://doi.org/10.3897/rio.2.e9390
List of selected tools.
Supplementary material 1 from: Sprondel N, Donner J, Mahlkow N, Köppel J (2016) Urban climate and heat stress: how likely is the implementation of adaptation measures in mid-latitude cities? The case of façade greening analyzed with Bayesian networks. One Ecosystem 1: e9280. https://doi.org/10.3897/oneeco.1.e9280
Questionnaire for Bayesian network analysis
Supplementary material 1 from: Vohland K, Häuser C, Regan E, Hoffmann A, Wetzel F (2016) 2nd EU BON Stakeholder Roundtable (Berlin, Germany): How can a European biodiversity network support citizen science? Research Ideas and Outcomes 2: e8616. https://doi.org/10.3897/rio.2.e8616
2nd EU BON Stakeholder Roundtable – Acronyms
Figure 5 from: Wetzel F, Despot Belmonte K, Bingham H, Underwood E, Hoffmann A, Häuser C, Mikolajczyk P, Vohland K (2017) 4th European Biodiversity Observation Network (EU BON) Stakeholder Roundtable: Pathways to sustainability for EU BONs network of collaborators and technical infrastructure. Research Ideas and Outcomes 3: e11875. https://doi.org/10.3897/rio.3.e11875
Figure 5 - Group 2 discussion: Strategies, Business Plan and EU BON sustainability (Credits: F. Wetzel)
Figure 4 from: Wetzel F, Despot Belmonte K, Bingham H, Underwood E, Hoffmann A, Häuser C, Mikolajczyk P, Vohland K (2017) 4th European Biodiversity Observation Network (EU BON) Stakeholder Roundtable: Pathways to sustainability for EU BONs network of collaborators and technical infrastructure. Research Ideas and Outcomes 3: e11875. https://doi.org/10.3897/rio.3.e11875
Figure 4 - Visualisation of Lepidoptera density occurences: World Map (darker colors indicate a higher number of occurrences) and Lepidoptera occurences chart bar per year, exemplified with the country data of Germany (EU BON European Biodiversity Portal, beta version 11/2016).
Figure 2 from: Wetzel F, Despot Belmonte K, Bingham H, Underwood E, Hoffmann A, Häuser C, Mikolajczyk P, Vohland K (2017) 4th European Biodiversity Observation Network (EU BON) Stakeholder Roundtable: Pathways to sustainability for EU BONs network of collaborators and technical infrastructure. Research Ideas and Outcomes 3: e11875. https://doi.org/10.3897/rio.3.e11875
Figure 2 - Potential organizational structure of a future EU BON, e.g. with a 'core EU BON' (blue rectangle). Presentation Dirk Schmeller (UFZ) in collaboration with Katherine Despot-Belmonte (UNEP-WCMC). (Credits: Pan X., 2015, CC BY 4.0)
Figure 1 from: Wetzel F, Despot Belmonte K, Bingham H, Underwood E, Hoffmann A, Häuser C, Mikolajczyk P, Vohland K (2017) 4th European Biodiversity Observation Network (EU BON) Stakeholder Roundtable: Pathways to sustainability for EU BONs network of collaborators and technical infrastructure. Research Ideas and Outcomes 3: e11875. https://doi.org/10.3897/rio.3.e11875
Figure 1 - How do we get from data to decisions? Extract from a presentation by Lauren Weatherdon (UNEP-WCMC). Credit: Scriberia, CC BY 4.0
Figure 3 from: Wetzel F, Despot Belmonte K, Bingham H, Underwood E, Hoffmann A, Häuser C, Mikolajczyk P, Vohland K (2017) 4th European Biodiversity Observation Network (EU BON) Stakeholder Roundtable: Pathways to sustainability for EU BONs network of collaborators and technical infrastructure. Research Ideas and Outcomes 3: e11875. https://doi.org/10.3897/rio.3.e11875
Figure 3 - Screenshot of the beta version of the EU BON European Biodiversity Portal (biodiversity.eubon.eu).
Figure 2 of the paper "Multi-level structure of the First Tuesday communities after the 2000 dot-com crash: A social network analysis of economic actors based on web archives"
<p><span><span><span><span><span><span><span><span>An example of a First Tuesday meeting held</span></span></span></span></span></span><span><span><span><span><span><span> in Riga in December 2001.</span></span></span></span></span></span></span></span></p>
Bioprospecting of soil-borne microorganisms and chemical dereplication of their anti-microbial constituents with the aid of UPLC-QTOF-MS and Molecular Networking approach
Open the record for dataset details and reuse information.
THE DONALD TRUMP CASE AND THEBIG TECH: THE PERMANENT DELETION OF ACCOUNTS ON SOCIAL NETWORKS ANALYZED FROM THE BRAZILIAN CONSTITUTIONAL PERSPECTIVE
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PRODUCTION CHAIN: NETWORK VISION AND DECISION FACTORS AND NETWORK MANAGEMENT
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Predicting Code Comprehension: A Novel Approach to Align Human Gaze with Code Using Deep Neural Networks
<p><strong>Checkout our Github-Repo for more information, issues, and pull requests: </strong></p> <p><a href="https://github.com/Taremeh/predicting-code-comprehension-eye-tracking/">https://github.com/Taremeh/predicting-code-comprehension-eye-tracking/</a></p> <p> </p> <p>Dataset and Replication Package for our paper "Predicting Code Comprehension: A Novel Approach to Align Human Gaze with Code Using Deep Neural Networks"</p>
Data for Evaluating the generalizability of graph neural networks for predicting collision cross section
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Atomistic Predictions and Network-Based Allosteric Analysis of Conformational Ensembles for the State-Switching ABL Kinase Mutants Using Combination of Alanine Sequence Scanning and Shallow Subsampling in AlphaFold2
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Length control emerges from cytoskeletal network geometry
<p>Data and images from "Length control emerges from cytoskeletal network geometry".</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.