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FIGURE 2 in Combination of morphological and molecular data support Pestalotiopsis eleutherococci (Sporocadaceae) as a new species
FIGURE 2. Pestalotiopsis eleutherococci (HMJAU 60189, holotype). a. Leaf of Eleutherococcus brachypus. b. Conidiomata on host tissue. c. Section of partial conidioma. d. Close-up of the peridium. e–f. Conidiogenous cells and conidia. g–j. Conidia. k. Conidiomata sporulating on PDA. l. Culture in PDA after three weeks of incubation. Scale bars: b = 500 µm, c = 100 µm, d = 50 µm, e–j = 20 µm.
FIGURE 1 in Combination of morphological and molecular data support Pestalotiopsis eleutherococci (Sporocadaceae) as a new species
FIGURE 1 (Continued). The best-scoring RAxML tree constructed from a concatenated ITS, tef1-α, and tub2 dataset of Pestalotiopsis species.
FIGURE 1. The best-scoring RAxML tree constructed from a concatenated ITS, tef1 in Combination of morphological and molecular data support Pestalotiopsis eleutherococci (Sporocadaceae) as a new species
FIGURE 1. The best-scoring RAxML tree constructed from a concatenated ITS, tef1-α, and tub2 dataset of Pestalotiopsis species. The tree is rooted with Truncatella laurocerasi (ICMP 11214) and T. angustata (CBS 144025). The asterisk at P. jesteri indicates its ambiguous status on Index Fungorum (2022). The type delivered sequences are indicated in bold and marked with T. The new isolates are in blue. The asterisk at P. intermedia indicates a misidentification.
Supporting data for: Planted conifer seedling survival in a post-wildfire landscape in New Mexico: From experimental planting to predictive probabilistic surfaces
<p>Across the southwestern United States, high-severity wildfire is causing increasingly large patches of tree mortality, removing the seed sources required for the natural regeneration of these formerly conifer-dominated landscapes. Planting tree seedlings can accelerate succession and restore the ecosystem services that pre-wildfire forests provided, but in the semi-arid southwestern US, the survival of planted conifer seedlings is typically low. We present data on a seedling planting experiment within the footprint of the 2011 Las Conchas Fire in northern New Mexico, using microclimate variables and site-level topographic indices to determine which factors influence seedling survival of four conifer tree species. We then extrapolate these findings to the wider landscape for the most commonly planted species, producing a spatial projection of probabilistic seedling survival as a function of both site- and landscape-scale factors, using readily available topographic data. Both sets of analyses highlight the importance of landscape heterogeneity, quantifiable using topographic indices, in shaping microclimatic environments and affecting seedling survival in a predictable manner. Our results demonstrate that using these methods to guide future plantings may increase conifer tree seedling survival in high-severity post-wildfire landscapes.</p>
FIGURE 24 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 24. Scanning electron micrograph of spermaderms of Entolasia, Panicum s.s. and Stolonochloa. a. S. lachnophylla from Forster PIF42156 (BRI). b. S. pygmaeafrom Bean 31074 (BRI). c. E. stricta from Thompson MOR756 (BRI). d. P. effusum from Thompson EJT916 (BRI). Images: E.J. Thompson; captured at x1000. Scale bar: 200 µm
FIGURE 13 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 13. Inflorescences of Entolasia, Panicum s.s. and Stolonochloa. a. S. lachnophylla from Forster PIF42156 (BRI) (SE Queensland). b. S. lachnophylla from Hyland 1831 (BRI) (North Queensland). c. S. pygmaea from Bean 31074(BRI). d. E. stricta from Thompson MOR756 (BRI). e. P. effusum from Thompson EJT916 (BRI). Scale bar: 5 cm.
FIGURE 10 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 10. Dorsal and ventral views of spikelets and upper paleas of Entolasia, Panicum s.s. and Stolonochloa. a–c. S. lachnophylla from Forster PIF42156 (BRI). d–f. S. pygmaea from Bean 31074 (BRI). g–i. E. stricta from Thompson MOR756 (BRI). j–l. P. effusum from Thompson EJT916 (BRI). Images: E.J. Thompson. Scale bar: 1 mm. Abbreviations: elaiosome; LL lower lemma; LG lower glume; UG upper glume; UP upper palea.
FIGURE 7 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 7. Examples of dendrograms generated from PATN analyses using Gower association measure and four datasets composed of the highest-ranking discriminating characters. Ranking of discriminating morphological characters was based on Kruskal-Wallis values at the 8-group level generated from the analysis of the baseline dataset of 21 samples and 133 morphological characters. a. Top 10 characters. b. Top 50 characters. c. Top 60 characters. d. Top 80 characters. Classification strategy set at flexible UPGMA agglomerative hierarchical fusion technique with Beta = -0.10.
FIGURE16 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE16. Scanning electron micrograph of the dorsal surface of the lower lemma of Entolasia, Panicum s.s. and Stolonochloa. a. S. lachnophylla from Forster PIF42156 (BRI). b. S. pygmaea from Bean 31074(BRI). c. E. stricta from Thompson MOR756 (BRI). d. P.effusum from Thompson EJT916 (BRI). P. miliaceum from Everists.n. (BRI). Images: E.J. Thompson; captured at x1000. Scale bar: 100 µm. Abbreviations: bmh bicellular microhair; cp compound papillae; S stoma; sp simple papillae; sb silica body
FIGURE 4. 3-D in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 4. 3-D ordination generated from PATN analyses using Czekanowski association measure, and dataset with 21 samples and all 133 morphological characters. Ordination Stress Value = 0.1234. Ordination from principle component analysis using semi-strong hybrid multidimensional scaling (SSH).
FIGURE 3. Dendrogram generated from PATN analyses using Czekanowski metric association measures the dataset comprising eight samples and 133 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 3. Dendrogram generated from PATN analyses using Czekanowski metric association measures the dataset comprising eight samples and 133 morphological characters. Classification strategy set at flexible UPGMA agglomerative hierarchical fusion technique with Beta = -0.10.
FIGURE 23 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 23. Dorsal, ventral and cross-sectional views of caryopses of Entolasia, Panicum s.s. and Stolonochloa. a–b. S. lachnophylla from Forster PIF42156 (BRI). c–e. S. pygmaea from Bean 31074 (BRI). f–h. E. stricta from Thompson MOR756 (BRI). i–k. P. effusum from Thompson EJT916 (BRI). Images: E.J. Thompson. Scale bar: 1 mm. Abbreviations: hi hilum; sc scutellum
FIGURE 2. 3-D in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 2. 3-D ordination generated from PATN analyses using Gower association measure, and dataset with 21 samples and all 133 morphological characters. Ordination Stress Value = 0.1107. Ordination from principle component analysis using semi-strong hybrid multidimensional scaling (SSH).
FIGURE 6 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 6. Dendrogram generated from PATN analysis using Gower association measure and dataset composed of 21 samples and all characters transformed to binary yielding 257 characters. The baseline dataset consisted of 133-character set of which 57 were multistate. Classification strategy set at flexible UPGMA agglomerative hierarchical fusion technique with Beta = -0.10.
FIGURE 9. 3-D in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 9. 3-D ordination generated from PATN analyses of data for a priori selected characters used by Zuloaga et al. (2000) and Morrone et al. (2012) using Gower association measure. Ordination Stress Value = 0.0639. Ordination from principle component analysis using semi-strong hybrid multidimensional scaling (SSH).
FIGURE 1. Dendrogram generated from PATN analyses using Gower association measures the dataset comprising 21 samples and 133 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 1. Dendrogram generated from PATN analyses using Gower association measures the dataset comprising 21 samples and 133 morphological characters. Classification strategy set at flexible UPGMA agglomerative hierarchical fusion technique with Beta = -0.10.
FIGURE 15 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 15. Scanning electron micrograph of the apex of lower lemma of Entolasia, Panicum s.s. and Stolonochloa. a. S. lachnophylla from Forster PIF42156 (BRI). b. S. pygmaeafrom Bean 31074 (BRI). c. E. stricta from Thompson MOR756 (BRI). d. P. effusum from Thompson EJT916 (BRI). Images: E.J. Thompson; captured at x1000. Scale bar: 100 µm. Abbreviations: smh strap-shaped microhairs
FIGURE 20 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 20. Transverse section of fresh leaves at mid vein of Entolasia, Panicum s.s. and Stolonochloa. a. S. lachnophylla, plant cultivated from Forster PIF42156 (BRI). b. S. pygmaea from Bean 31074 (BRI). c. E. stricta from Thompson MOR756 (BRI). d. P. effusum from Thompson EJT916 (BRI). Images: E.J. Thompson. Scale bar: 100 µm. Abbreviations: bf bulliform cells; chlchlorenchyma; sclsclerenchyma; s strand, g girder; tbmah tuberculate-based macrohair. a. and b. with C 3 bundle sheath (bs) with inner "horse-shoe" of thick-walled cells and several adaxial thin-walled cells and outer ring of relatively large uneven-sized parenchyma cells. Adaxial leaf surface undulate. c. with C 3 bundle sheath with inner "horse-shoe" of thick-walled cells and several adaxial thin-walled cells and outer ring of relatively even-sized parenchyma cells. d. with C 4 bundle sheath with inner "horse-shoe" of thick-walled cells and several adaxial thin-walled cells and outer mestome sheath of two arcs of chlorenchymous cells.
FIGURE 22 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 22. Replicas of the surface of leaf of Entolasia, Panicum s.s. and Stolonochloa. a. S. lachnophylla from Henderson H1295 (BRI). b. S. pygmaea from Bean 31074 (BRI). c. E. stricta from Thompson MOR756 (BRI). d. P. effusum from Thompson EJT916 (BRI). Images: E.J. Thompson. Scale bar: 50 µm. Abbreviations: bmh bicellular microhair; h hook; mah simple macrohair; S stoma; sb silica body; tbmah tuberculate-based macrohair
FIGURE 21 in Stolonochloa, a new Australian genus segregated from Panicum (Poaceae: Panicoideae: Paniceae: Boivinellinae) based on phenetic analysis of morphological data
FIGURE 21. Scanning electron micrograph of the surface of leaf of Entolasia, Panicum s.s. and Stolonochloa. a. S. lachnophylla from Forster PIF42156 (BRI). b. S. pygmaeafrom Bean 31074 (BRI). c. E. stricta from Thompson MOR756 (BRI). d. P. effusum from Thompson EJT916 (BRI). Images: E.J. Thompson; captured at x1000. Scale bar: 100 µm. Abbreviations: aw anticlinal wall of intercostal long cell; bmh bicellular microhair; h hook; pr prickle; mihsimple microhair; S stoma; sb silica body; tbmah tuberculate-based macrohair
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.