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ENIGMA Pediatric msTBI diffusion MRI supplemental data
<p><b>Objective</b>: Our study addressed aims: (1) test the hypothesis that moderate-severe TBI in pediatric patients is associated with widespread white matter (WM) disruption; (2) test the hypothesis that age and sex impact WM organization after injury; and (3) examine associations between WM organization and neurobehavioral outcomes.</p> <p><b>Methods</b>: Data from ten previously enrolled, existing cohorts recruited from local hospitals and clinics were shared with the ENIGMA (Enhancing NeuroImaging Genetics through Meta-Analysis) Pediatric msTBI working group. We conducted a coordinated analysis of diffusion MRI (dMRI) data using the ENIGMA dMRI processing pipeline.</p> <p><b>Results</b>: Five hundred and seven children and adolescents (244 with complicated mild to severe TBI [msTBI] and 263 controls) were included. Patients were clustered into three post-injury intervals: acute/subacute - <2 months, post-acute - 2-6 months, chronic - 6+ months. Outcomes were dMRI metrics and post-injury behavioral problems as indexed by the Child Behavior Checklist (CBCL). Our analyses revealed altered WM diffusion metrics across multiple tracts and all post-injury intervals (effect sizes ranging between <i>d</i>=-0.5 to -1.3). Injury severity is a significant contributor to the extent of WM alterations but explained less variance in dMRI measures with increasing time post-injury. We observed a sex-by-group interaction: females with TBI had significantly lower fractional anisotropy in the uncinate fasciculus than controls (π«=0.043), which coincided with more parent-reported behavioral problems (π«=-0.0027).</p> <p><b>Conclusions</b>: WM disruption after msTBI is widespread, persistent, and influenced by demographic and clinical variables. Future work will test techniques for harmonizing neurocognitive data, enabling more advanced analyses to identify symptom clusters and clinically-meaningful patient subtypes.</p>
Supplemental Files for The Microbiome and Volatile Organic Compounds Reflect the State of Decomposition in an Indoor Environment
<p>Supplemental File 1: Operational taxonomic unit (OTU) matrix, taxonomy table, and metadata of decomposing swine microbiome data (uploaded file into R)</p> <p>Supplemental File 2: Volatile Organic Compounds identified in each stage of decomposition with functional group, retention time, peak area, and logarithmic value of relative peak area</p> <p>Supplemental File 3: Random forest analysis output including predictor species for each sampling location and Groupings</p>
Supplement Material for "Nutritional assessment of ready-to-eat salads in supermarkets: comparison of the nutriRECIPE-Index and the Nutri-Score"
<p>Supplement Material for "Nutritional assessment of ready-to-eat salads in supermarkets: comparison of the nutriRECIPE-Index and the Nutri-Score"</p>
Data from: Toxic diffuse isolated cerebellar edema from over-the-counter health supplements
[No abstract entered]
Supplemental Material for BeWo HPMVEC Hand1 knockdown Paper
<p>This is supplemental material relating to the scientific manuscript entitled "HAND1 knockdown disrupts trophoblast global gene expression".</p>
High-Content Live-Cell Multiplex Screen for Chemogenomic Compound Annotation based on Nuclear Morphology - Supplemental Material
<p>High-Content Live-Cell Multiplex Screen for Chemogenomic Compound Annotation based on Nuclear Morphology</p> <p>Supplementary Material of linked STAR-protocol</p>
Figure 1 from: Ichim M, Crisan G, Tebrencu C, de Boer H (2017) PhytoAuthent: Molecular authentication of complex herbal food supplements for safety and efficacy. Research Ideas and Outcomes 3: e21710. https://doi.org/10.3897/rio.3.e21710
Figure 1 - Value chains of herbal food supplements studied by the PhytoAuthent project.
AdvMatTechnol 3+4+supplements
Open the record for dataset details and reuse information.
Supplemental Table S1: Survey instrument
<p>Supplemental Table S1: Survey instrument. This table is a supporting document for the publication "Assigned group work is associated with increased student motivation and perceptions of belonging in an asynchronous online physiology laboratory course". Authors: Shea E. Carr, Thad E. Wilson, Stacey A. Slone, Leila W. Karanja, Jennifer L. Osterhage. </p>
Supporting Software Maintenance with Dynamically Generated Document Hierarchies (Supplemental)
<p>Supplemental materials for submission to ICSME 24 titled "<span>Supporting Software Maintenance with </span><span>Dynamically Generated Document Hierarchies"</span></p>
Supplement to Inferring the evolutionary history of the Sino-Himalayan biodiversity hotspot using a Bayesian birth-death skyline model
<p>This repository contains the supplementary files for:</p> <p>Allen BJ, Vaughan TG, du Plessis L, Schouten TLA, Yuan Z, Willett SD, Stadler T. 2024. Inferring the evolutionary history of the Sino-Himalayan biodiversity hotspot using a Bayesian birth-death skyline model. Geological Society of London Special Publications, 549.</p> <p><strong>Description of files</strong></p> <p>This repository contains the cleaned tree file, raw log files, simulated trees, XML files for running the analyses in BEAST2, and R code to process the datasets.</p> <p>Liu_et_al_SinoHimalayan.nex - the phylogeny inferred by Liu et al. (2021), trimmed to only include the 8864 tips associated with genetic data</p> <p>Skyline_logs.zip - skyline logs produced by BEAST2 analyses (see below for naming convention)</p> <p>Regression_results.zip - results of the linear modelling between global palaeotemperature and diversification estimates</p> <p>Sim_trees.trees - the phylogenies simulated by ReMASTER</p> <p>Adequacy_logs.zip - skyline logs produced from the analyses using the simulated phylogenies</p> <p> </p> <p><strong>Description of BEAST2 XMLs</strong></p> <p>The XML files contain the BEAST2 configurations for:</p> <p>Liu_et_al_bd.xml, Liu_et_al_bd_high.xml, Liu_et_al_bd_mid.xml, Liu_et_al_bd_low.xml - skyline analyses using equal length time bins, with beta sampling prior, high fixed sampling, mid fixed sampling, and low fixed sampling respectively</p> <p>Liu_et_al_bd_geol.xml, Liu_et_al_bd_geol_high.xml, Liu_et_al_bd_geol_mid.xml, Liu_et_al_bd_geol_low.xml - skyline analyses using geological time bins, with beta sampling prior, high fixed sampling, mid fixed sampling, and low fixed sampling respectively</p> <p>Remaster_simulation.xml - simulating new phylogenies based on the inferred skylines using ReMASTER</p> <p>Sim_trees.xml - skyline analyses conducted on the simulated phylogenies</p> <p> </p> <p><strong>Description of R code</strong></p> <p>The R code is subdivided into the following files:</p> <p>BDSKY_skylines.R - code for processing and plotting skyline data from the BEAST2 log files</p> <p>BDSKY_adjacent_bins.R - code for the analyses examining the increase or decrease in evolutionary rates between adjacent skyline bins</p> <p>Plot_palaeotemp_comparison.R - code for plotting the diversification estimates against global palaeotemperature, as taken from Scotese et al. (2021)</p> <p>Palaeotemperature_regressions.R - code for linear modelling between global palaeotemperature and diversification estimates</p> <p>Remaster_processing.R - code for processing and plotting inferred skylines from the simulated datasets</p>
Fig. 1 in An Effectiveness Of Artemia Nauplii Enrichment With Polyunsaturated Fatty Acids Using A Supplement Easy Dha Selco
Fig. 1. The content of TBARS in Artemia nauplii during bioencapsulation with Easy DHA Selco.
Supplemental Data Files for Advances in Organ-Specific Dosimetry Models for Radionuclides and Radiopharmaceuticals at Their Macro And Micro Scales
<p>Data sets for Aims 1 and 2 of my dissertation. Both aims contain three excel spreadsheets for a total of 6 files with the computed specific absorbed fractions and S-values.</p>
Datasets supplementing journal article "Exceptionally Stable Cobalt Nanoclusters on Functionalized Graphene" in Small Structures 2024
<p>Datasets supporting the journal article "Exceptionally Stable Cobalt Nanoclusters on Functionalized Graphene", <span>Small Structures</span><span> </span><span>2024</span><span>, 2400055 (<a href="https://doi.org/10.1002/sstr.202400055">https://doi.org/10.1002/sstr.202400055</a>).</span></p> <p>STM raw and analysed data (.sm4, .gwy) can be opened with open source Gwyddion software (http://gwyddion.net/).</p> <p>STM time-lapse video (.mp4) showing the exposure of Co cluster on G/Ni(100) to CO gas. The pressures corresponding to each step are indicated. The initial stage consists of a 30-minute period without CO, followed by 30-minute intervals at each pressure step. Total time of the video 2 h.</p>
Supplemental Material: Computational experiments in Computer Science: A bibliometric study
<p>This laboratory package contains supplemental material from the study: "Supplemental Material: Computational experiments in Computer Science: A bibliometric study". The supplementary material contains:</p> <p>1. The .xlsx files of the dataset used to analyze the RQs.</p> <p>2. The .pdf files of the figures published in the paper.</p> <p>3. The .xlsx files of the tables published in the paper.</p>
DeepOF supplemental material
<p>Complete data repository for <a href="https://www.nature.com/articles/s41467-023-40040-3"><em>"Automatically annotated motion tracking identifies a distinct social behavioral profile following chronic social defeat stress"</em></a>, including <a href="https://github.com/mlfpm/deepof">DeepOF</a> projects, tracking tables and videos, as well as notebooks to reproduce all figures in the paper.</p>
Figs. 11β14. 11. Dolium melanostomum Jay, 1839 in Catalog Of Recent Type Specimens In The Division Of Invertebrate Zoology, American Museum Of Natural History. V. Mollusca, Part 2 (Class Gastropoda [Exclusive Opisthobranchia And Pulmonata With Supplements To Gastropoda [Opisthobranchia], And Bivalvia
Figs. 11β14. 11. Dolium melanostomum Jay, 1839 (holotypeβAMNH 56115), X 0.45. 12.
supplemental data for QTL MAPPING TO IDENTIFY LOCI AND CANDIDATE GENES ASSOCIATED WITH FREEZING TOLERANCE TRAIT IN CAMELINA SATIVA
Open the record for dataset details and reuse information.
Supplemental Material for "Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)"
<p>Supplemental materials to the manuscript.</p>
Figure 1 from: Ichim M, Crisan G, Tebrencu C, de Boer H (2018) PhytoAuthent: Molecular authentication of complex herbal food supplements for safety and efficacy. Research Ideas and Outcomes 4: e26986. https://doi.org/10.3897/rio.4.e26986
Figure 1 Value chains of herbal food supplements studied by the PhytoAuthent project.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.