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FIGURE. Puccinia poae-nemoralis on Poa sp. A. Uredinia and telia on the leaf surface. B. Vertical section of an uredinium with paraphyses. C. Immature teliospores. D. Teliospores. Scale bars: B, C, D = 20 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia poae-nemoralis on Poa sp. A. Uredinia and telia on the leaf surface. B. Vertical section of an uredinium with paraphyses. C. Immature teliospores. D. Teliospores. Scale bars: B, C, D = 20 μm.
FIGURE. Puccinia achnatheri-sibirici on Berberis amurensis (A–H) and Stipa baicalensis (I–M). A. Plants producing spermogonia and aecia on leaf surface in the field. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Spermogonia on the upper leaf surface. E. Vertical section of an aecium surrounded with peridia. F. Aeciospores. G. Aecium observed under SEM. H. Aeciospore with verrucose surface observed under SEM. I, J. Telia on the leaf surface. K. Urediniospores. L. Teliospores. M. Vertical section of a telium. Scale bars: C, F, L, M = 20 μm, E = 50 μm, G = 100 μm, H = 5 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia achnatheri-sibirici on Berberis amurensis (A–H) and Stipa baicalensis (I–M). A. Plants producing spermogonia and aecia on leaf surface in the field. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Spermogonia on the upper leaf surface. E. Vertical section of an aecium surrounded with peridia. F. Aeciospores. G. Aecium observed under SEM. H. Aeciospore with verrucose surface observed under SEM. I, J. Telia on the leaf surface. K. Urediniospores. L. Teliospores. M. Vertical section of a telium. Scale bars: C, F, L, M = 20 μm, E = 50 μm, G = 100 μm, H = 5 μm.
FIGURE. Puccinia pygmaea on Deyeuxia purpurea. A, F. Uredinia and telia on the leaf surface. B. Urediniospores. C. Vertical section of an uredinium with paraphyses. D. Teliospores. E. Vertical section of a telium. Scale bars: B = 30 μm, C = 50 μm, D, E = 20 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia pygmaea on Deyeuxia purpurea. A, F. Uredinia and telia on the leaf surface. B. Urediniospores. C. Vertical section of an uredinium with paraphyses. D. Teliospores. E. Vertical section of a telium. Scale bars: B = 30 μm, C = 50 μm, D, E = 20 μm.
FIGURE. Puccinia coronati-hordei on Elymus dahuricus A. Uredinia and telia on the leaf surface. B. Urediniospores. C. Vertical section of an uredinium with paraphyses. D. Vertical section of a telium. E. Teliospores. Scale bars: B, C, D, E = 20 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia coronati-hordei on Elymus dahuricus A. Uredinia and telia on the leaf surface. B. Urediniospores. C. Vertical section of an uredinium with paraphyses. D. Vertical section of a telium. E. Teliospores. Scale bars: B, C, D, E = 20 μm.
FIGURE. Puccinia digitaticoronata on Rhamuns sp. (A–C, F, J) and species of Poaceae (D, E, G–I, K, L). A. Vertical section of spermogonia. B. Vertical section of an aecium surrounded with peridia. C. Aeciospores. D. Plants producing uredinia on the leaf surface in the field. E. Urediniospores. F. Aecium observed under SEM. G. Uredinia on the leaf surface. H. Telia on the leaf surface. I. Vertical section of an uredinium. J. Aeciospore with verrucose surface observed under SEM. K. Teliospores. L. Vertical section of a telium. Scale bars: A, I = 40 μm, B = 60 μm, C, E, K, L= 20 μm, J, F = 80 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia digitaticoronata on Rhamuns sp. (A–C, F, J) and species of Poaceae (D, E, G–I, K, L). A. Vertical section of spermogonia. B. Vertical section of an aecium surrounded with peridia. C. Aeciospores. D. Plants producing uredinia on the leaf surface in the field. E. Urediniospores. F. Aecium observed under SEM. G. Uredinia on the leaf surface. H. Telia on the leaf surface. I. Vertical section of an uredinium. J. Aeciospore with verrucose surface observed under SEM. K. Teliospores. L. Vertical section of a telium. Scale bars: A, I = 40 μm, B = 60 μm, C, E, K, L= 20 μm, J, F = 80 μm.
FIGURE. Puccinia eleganticoronata on Rhamnus davurica (A–C, E–G, J) and Poa sp. (D, H, I). A. Plants producing spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of an aecium surrounded with peridia. D, H. Telia on the stems. E. Vertical section of a spermogonium. F. Aeciospores. G. Aeciospore observed under SEM. I. Vertical section of a telium. J. Aecium observed under SEM. Scale bars: C = 50 μm, E, I = 30 μm, F = 20 μm, G = 5 μm, J = 60 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia eleganticoronata on Rhamnus davurica (A–C, E–G, J) and Poa sp. (D, H, I). A. Plants producing spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of an aecium surrounded with peridia. D, H. Telia on the stems. E. Vertical section of a spermogonium. F. Aeciospores. G. Aeciospore observed under SEM. I. Vertical section of a telium. J. Aecium observed under SEM. Scale bars: C = 50 μm, E, I = 30 μm, F = 20 μm, G = 5 μm, J = 60 μm.
FIGURE. Puccinia protuberanticoronata on Rhamnus ussuriensis (A–D, F, I) and Calamagrostis kengii (E, G, H). A. Spermogonia and aecia on the leaf surface. B. Vertical section of a spermogonium. C. Vertical section of an aecium surrounded with peridia. D. Aecia on the stem. E. Teliospores. F. Aecium observed under SEM. G. Telia on the leaf surface. H. Vertical section of a telium. I. Aeciospore with verrucose surface observed under SEM. Scale bars: B, E, H = 20 μm, C, F = 50 μm, I = 5 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia protuberanticoronata on Rhamnus ussuriensis (A–D, F, I) and Calamagrostis kengii (E, G, H). A. Spermogonia and aecia on the leaf surface. B. Vertical section of a spermogonium. C. Vertical section of an aecium surrounded with peridia. D. Aecia on the stem. E. Teliospores. F. Aecium observed under SEM. G. Telia on the leaf surface. H. Vertical section of a telium. I. Aeciospore with verrucose surface observed under SEM. Scale bars: B, E, H = 20 μm, C, F = 50 μm, I = 5 μm.
FIGURE. Puccinia coronati-agrostidis on Agrostis sp. A, B. Uredinia on the leaf surface. C. Vertical section of an uredinium. D. Urediniospores. Scale bars: C = 20 μm, D =10 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia coronati-agrostidis on Agrostis sp. A, B. Uredinia on the leaf surface. C. Vertical section of an uredinium. D. Urediniospores. Scale bars: C = 20 μm, D =10 μm.
FIGURE. Puccinia ampliaticoronata on Rhamnus davurica (A–F) and Melica grandiflora (G–J). A. Spermogonia and aecia on the lower leaf surface. B. Vertical section of a spermogonium. C. Vertical section of an aecium surrounded with peridia. D. Aeciospores. E. Aecium observed under SEM. F. Aeciospore with verrucose surface observed under SEM. G. Urediniospores. H. Telia on the leaf surface. I. Vertical section of an uredinium. J. Teliospores. Scale bars: B, D, I = 30 μm, C = 50 μm, E = 100 μm, F = 5 μm, G = 10 μm, J = 20 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia ampliaticoronata on Rhamnus davurica (A–F) and Melica grandiflora (G–J). A. Spermogonia and aecia on the lower leaf surface. B. Vertical section of a spermogonium. C. Vertical section of an aecium surrounded with peridia. D. Aeciospores. E. Aecium observed under SEM. F. Aeciospore with verrucose surface observed under SEM. G. Urediniospores. H. Telia on the leaf surface. I. Vertical section of an uredinium. J. Teliospores. Scale bars: B, D, I = 30 μm, C = 50 μm, E = 100 μm, F = 5 μm, G = 10 μm, J = 20 μm.
FIGURE. Puccinia ramificaticoronata on Rhamnus ussuriensis (A–G) and species of Poaceae (H–K). A. Plants producing spermogonia and aecia on the leaf surface in the field. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Vertical section of an aecium surrounded with peridia. E. Aecium observed under SEM. F. Aeciospore with verrucose surface observed under SEM. G. Aeciospores. H. Vertical section of an uredinium. I. Urediniospores. J. Telia on the leaf surface. K. Vertical section of a telium. Scale bars: C, H = 40 μm, D, G = 30 μm, E = 80 μm, F = 5 μm, I, K =20 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia ramificaticoronata on Rhamnus ussuriensis (A–G) and species of Poaceae (H–K). A. Plants producing spermogonia and aecia on the leaf surface in the field. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Vertical section of an aecium surrounded with peridia. E. Aecium observed under SEM. F. Aeciospore with verrucose surface observed under SEM. G. Aeciospores. H. Vertical section of an uredinium. I. Urediniospores. J. Telia on the leaf surface. K. Vertical section of a telium. Scale bars: C, H = 40 μm, D, G = 30 μm, E = 80 μm, F = 5 μm, I, K =20 μm.
FIGURE. Puccinia pileiformis on Lonicera maackii (A–G) and Diarrhena fauriei (H–J). A. Spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Aeciospores. E. Vertical section of an aecium surrounded with peridia. F. Aecium observed under SEM. G. An aeciospore with verrucose surface observed under SEM. H, I. Telia on the leaf surface. J. Vertical section of a telium. Scale bars: C, E = 40 μm, D = 20 μm, F = 50 μm, G = 5 μm, J = 30 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia pileiformis on Lonicera maackii (A–G) and Diarrhena fauriei (H–J). A. Spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Aeciospores. E. Vertical section of an aecium surrounded with peridia. F. Aecium observed under SEM. G. An aeciospore with verrucose surface observed under SEM. H, I. Telia on the leaf surface. J. Vertical section of a telium. Scale bars: C, E = 40 μm, D = 20 μm, F = 50 μm, G = 5 μm, J = 30 μm.
FIGURE. Puccinia festucae on Lonicera praeflorens (A–F) and Festuca extremiorientalis (G, H). A. Spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Aaeciospore with verrucose surface observed under SEM. E. Vertical section of an aecium surrounded with peridia. F. Aecium observed under SEM. G. Telia on the leaf surface. H. Vertical section of a telium. Scale bars: C = 40 μm, D = 30 μm, E, F = 50 μm, H = 20 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia festucae on Lonicera praeflorens (A–F) and Festuca extremiorientalis (G, H). A. Spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Aaeciospore with verrucose surface observed under SEM. E. Vertical section of an aecium surrounded with peridia. F. Aecium observed under SEM. G. Telia on the leaf surface. H. Vertical section of a telium. Scale bars: C = 40 μm, D = 30 μm, E, F = 50 μm, H = 20 μm.
FIGURE. Puccinia rangiferina on Rhamuns koraiensis (A–D, F–H) and Deyeuxia pyramidalis (E, I–K). A. Spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Vertical section of an aecium surrounded with peridia. E, I. Telia on the leaf surface. F. Aeciospores. G. Aeciospore with verrucose surface observed under SEM. H. Aecium observed under SEM. J. Teliospores. K. Vertical section of a telium. Scale bars: C, D, K = 40 μm, F = 20 μm, G, J = 10 μm, H = 50 μm. in Phylogenetic approach for identification and life cycles of Puccinia (Pucciniaceae) species on Poaceae from northeastern China
FIGURE. Puccinia rangiferina on Rhamuns koraiensis (A–D, F–H) and Deyeuxia pyramidalis (E, I–K). A. Spermogonia and aecia on the leaf surface. B. Aecia on the lower leaf surface. C. Vertical section of a spermogonium. D. Vertical section of an aecium surrounded with peridia. E, I. Telia on the leaf surface. F. Aeciospores. G. Aeciospore with verrucose surface observed under SEM. H. Aecium observed under SEM. J. Teliospores. K. Vertical section of a telium. Scale bars: C, D, K = 40 μm, F = 20 μm, G, J = 10 μm, H = 50 μm.
Data and code from: A large-scale experiment demonstrates line marking reduces power line collision mortality for large terrestrial birds, but not bustards, in the Karoo, South Africa
<p>Line markers are widely used to mitigate bird collisions with power lines, but few studies have robustly tested their efficacy. Power line collisions are an escalating problem for several threatened bird species endemic to southern Africa, so it is critical to know whether or not marking works to adequately manage this problem. Over 8 years, a large-scale experiment was set up on 72 of 117 km of monitored transmission power lines in the eastern Karoo, South Africa, to assess whether line markers reduce bird collision mortality, particularly for Blue Cranes <i>Grus paradisea</i> and Ludwig's Bustards <i>Neotis ludwigii</i>. We tested the two marking devices commonly used in South Africa: bird flappers and static bird flight diverters. Using a before-after-control-impact design, we show that line marking reduced collision rates for Blue Cranes by 92% (95% CI 77-97%) and all large birds by 51% (95% CI 23-68%), but had no effect on bustards. Both marker types appeared similarly effective. Given that monitoring at this site also confirmed high levels of mortality of a range of species of conservation concern, we recommend that marking be widely installed on new power lines. However, other options need to be explored urgently to reduce collision mortality of bustards. Five bustard species were in the top ten list of most frequently found carcasses, and high collision rates of Ludwig's Bustards (0.68 birds·km<sup>-1</sup>·year<sup>-1</sup> uncorrected for survey biases) add to wider concerns about population level effects for this range-restricted and Endangered species. </p> <p>This dataset includes the data and R code for this journal paper.</p>
Tree growth response to drought partially explains regional-scale growth and mortality patterns in Iberian forests
<p>To quantify responses to drought from different data sources we take advantage of an extensive network of cross-dated tree-ring data with increment cores from 16 tree species sampled across the Spanish Iberian Peninsula (hereafter abbreviated as RWI-net), and of the Spanish National Forest Inventory (hereafter abbreviated as NFI) sampling tree and plot level data each km in forested areas.</p> <p>We selected the five most severe droughts that have affected each selected RWI-net population in the period 1981-2005 and calculated drought impacts on growth. For each site, we calculated drought-induced cumulative growth reductions (CDI, cumulative drought impact) as the summed impact of the selected droughts on growth of each population. </p> <p>A total of 334 RWI-net sites with chronologies that covered the period 1981-2005 for the 16 species, were finally used. For 192 of these RWI-net sites, 1883 NFI plots were found at distances < 10 km.</p> <p>The tables provided contain information on the sites and tree species in the RWI-net sites, as well as on drought impacts on growth, cummulative growth reductions and NFI growth, ingrowth and mortality.</p>
A national scale BioBlitz using citizen science and eDNA metabarcoding for monitoring coastal marine fish
<p>Marine biodiversity is threatened by human activities. To understand the changes happening in aquatic ecosystems and to inform management, detailed, synoptic monitoring of biodiversity across large spatial extents is needed. Such monitoring is challenging due to the time, cost, and specialized skills that this typically requires. In an unprecedented study, we here combined citizen science with eDNA metabarcoding to map coastal fish biodiversity at a national scale. We engaged 360 citizen scientists to collect filtered sea water samples from 100 sites across Denmark over two seasons (1 pm on September 29<sup>th</sup> 2019 and May 10<sup>th</sup> 2020), and by sampling at nearly the exact same time across all 100 sites, we obtained an overview of fish biodiversity largely unaffected by temporal variation. This would have been logistically impossible for the involved scientists without the help of volunteer citizens. We obtained a high return rate of 94% of the samples, and a total richness of 52 fish species, representing approximately 80% of coastal Danish fish species and approximately 25% of all Danish marine fish species. We retrieved distribution patterns matching known occurrence for both invasive, endangered, and cryptic species, and detected seasonal variation in accordance with known phenology. Dissimilarity of eDNA community compositions increased with distance between sites. Importantly, comparing our eDNA data with National Fish Atlas data (the latter compiled from a century of observations) we found positive correlation between species richness values and a congruent patterns of community compositions. These findings support the use of eDNA-based citizen science to detect patterns in biodiversity, and our approach is readily scalable to other countries, or even regional and global scales. We argue that future large-scale biomonitoring will benefit from using citizen science combined with emerging eDNA technology, and that such an approach will be important for data-driven biodiversity management and conservation.</p>
Supplementary material 1 from: Gueidan C, Li L (2022) A long-read amplicon approach to scaling up the metabarcoding of lichen herbarium specimens. MycoKeys 86: 195-212. https://doi.org/10.3897/mycokeys.86.77431
Table S1. List of specimens used for this study, including their voucher information, plate location, indexing, amplicon concentration and sequencing results, both as an output from SMRT tools (CCSs) and as an output from DADA2 (sequence variants). Table S2. List of the 64 barcode sequences used to index the samples. Used barcode pairs are listed in Table S1
Dataset for WRR journal "Pore space deformation and its implications for two-phase flow through porous media: A micro-scale experimental investigation"
<p>Pressure drop, pore network model</p> <p>Calculation of REVs, strains, absolute and relative permeabilities, porosities profiles, grain size distribution, pore and throat size distribution. coordination number, aspect ratio, etc.</p>
FIGURES 354–355. Female genitalia. Scale bar 200 in Systematics, revisionary taxonomy, and biodiversity of Afrotropical Lithocolletinae (Lepidoptera: Gracillariidae)
FIGURES 354–355. Female genitalia. Scale bar 200 µm. 354, Porphyrosela homotropha, paratype, the drawing is made by Willy De Prins after the original description and the drawing of Vári (1963: 12; fig. 11). 355, Porphyrosela teramni, genitalia prep. MRAC/KMMA 00433, in RMCA.
FIGURES 345–346. Female genitalia. Scale bar 200 in Systematics, revisionary taxonomy, and biodiversity of Afrotropical Lithocolletinae (Lepidoptera: Gracillariidae)
FIGURES 345–346. Female genitalia. Scale bar 200 µm. 345, Phyllonorycter ocimellus, paratype, genitalia prep. MRAC/ KMMA 00353, in RMCA. 346, Phyllonorycter pavoniae, paratype, the drawing is made by Willy De Prins after the genitalia prep. Vári 7497, in TMSA.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.