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779
datasets available to search
ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
CTCF depletion uncouples the role of enhancer-promoter interactions and higher-order chromatin hubs in gene regulation during cellular differentiation [ChIPmentation]
GEO Series GSE263637. Homo sapiens. 42 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Global Genome Conformational Programming during Neuronal Development by CTCF and nFGFR1 - The Genome Archipelago Model
GEO Series GSE153884. Mus musculus. 12 samples. Type: Other.
CTCF is a Barrier for Totipotent-like Reprogramming [END-seq]
GEO Series GSE165161. Mus musculus. 4 samples. Type: Other.
CTCF deficiency in CD8 homeostatic proliferation [RNA-seq]
GEO Series GSE198264. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
A distinct motif for numerous CTCF binding sites in the murine IgH locus
GEO Series GSE124153. Mus musculus. 3 samples. Type: Genome binding/occupancy profiling by genome tiling array.
CTCF is a Barrier for Totipotent-like Reprogramming [Cut&Run]
GEO Series GSE165160. Mus musculus. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus
GEO Series GSE98632. Mus musculus. 68 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
CTCF N-terminal Domain Regulates Clustered Protocadherin Gene Expression by Enhancing Cohesin Processivity [ChIP-seq]
GEO Series GSE285578. Mus musculus. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Maintenance of CTCF and transcription factor-mediated interactions from gametes to the early mouse embryo (ChIP-seq)
GEO Series GSE116855. Mus musculus. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CTCF translates IL-2- and αKG-sensitive metabolic changes in T cells into context-dependent differentiation gene programs [HiC-Seq]
GEO Series GSE89676. Mus musculus. 3 samples. Type: Other.
Dysregulation of RNA Pol activity at CTCF binding sites in EBV LCL ΔCTCF mutant
GEO Series GSE211247. Homo sapiens. 8 samples. Type: Other.
CTCF-dependent insulation of Hoxb13 and the heterochronic control of tail length
GEO Series GSE272483. Mus musculus. 54 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Third-party reanalysis.
The lncRNA DUBR is regulated by CTCF and coordinates chromatin landscape and gene expression in hematopoietic cells [ChIP-Seq]
GEO Series GSE268500. Homo sapiens. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The essential role of CTCF binding site at TAD boundaries in modulating Ifng locus chromatin interactions and transcriptional regulation [Hi-C]
GEO Series GSE300741. Mus musculus. 3 samples. Type: Other.
CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention
GEO Series GSE136122. Mus musculus. 5 samples. Type: Other.
Role of the cellular factor CTCF in the regulation of Bovine Leukemia Virus latency and three-dimensional chromatin organization [ChIP-seq]
GEO Series GSE178482. Ovis aries. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Disentangling the architectural and non-architectural functions of CTCF and cohesin in global gene regulation
GEO Series GSE262521. Mus musculus. 68 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Analysis of nascent transcription by EU-seq in HUDEP-2 cells following CTCF degredation
GEO Series GSE292670. Homo sapiens. 8 samples. Type: Other.
Hoxblinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia [ChIP-Seq]
GEO Series GSE269217. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cohesin and CTCF control chromosomal contact dynamics in living cells [Hi-C]
GEO Series GSE197231. Mus musculus. 3 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.