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520
datasets available to search
ShareScore release 0.9.0
Dataset results
520 results for “Host interactions”
Transposon sequencing during experimental osteomyelitis reveals hypoxic responses as key components of the staphylococcal-host interaction
GEO Series GSE75516. Staphylococcus aureus. 8 samples. Type: Expression profiling by array.
Analysis of 3D interactions identifies candidate host genes that transposable elements potentially regulate (Hi-C)
GEO Series GSE122976. Homo sapiens. 1 samples. Type: Other.
Dual RNA-seq analysis reveals the interaction between multidrug-resistant Klebsiella pneumoniae and host in a mouse model of pneumonia
GEO Series GSE289556. Klebsiella pneumoniae; Mus musculus. 36 samples. Type: Expression profiling by high throughput sequencing.
Host-Microbial interactions in Idiopathic Pulmonary Fibrosis
GEO Series GSE93606. Homo sapiens. 174 samples. Type: Expression profiling by array.
Viral-mediated ubiquitination impacts interactions of host proteins with viral RNA and promotes viral RNA processing
GEO Series GSE145411. Homo sapiens. 9 samples. Type: Other.
Analysis of 3D interactions identifies candidate host genes that transposable elements potentially regulate (Capture Hi-C)
GEO Series GSE122975. Homo sapiens. 4 samples. Type: Other.
Dynamics of phage-host interactions in Bacteroides fragilis resolved by single-cell transcriptomics [bulk RNA-Seq data]
GEO Series GSE318809. Bacteroides fragilis. 6 samples. Type: Expression profiling by high throughput sequencing.
Divergent co-transcriptomes of different host cells infected with Toxoplasma gondii reveal cell type-specific host-parasite interactions
GEO Series GSE94595. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
LincRNA-EPS negatively regulates host antiviral immunity by antagonizing viral RNA interacting with PKR
GEO Series GSE193326. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
An integrated analysis of gut microbiota and the brain transcriptome reveals host-gut microbiota interactions following traumatic brain injury
GEO Series GSE205958. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
SARS-CoV-2 Nucleocapsid protein attenuates stress granule formation and interacts directly with mRNAs to impair host stress response
GEO Series GSE171010. Homo sapiens. 26 samples. Type: Expression profiling by high throughput sequencing; Other.
An Integrated Approach to Understanding Host-Pathogen Interactions
GEO Series GSE94274. Macaca mulatta; Plasmodium coatneyi; Plasmodium cynomolgi strain B; Plasmodium cynomolgi ceylonensis; Macaca fascicularis; Plasmodium knowlesi. 556 samples. Type: Expression profiling by high throughput sequencing.
EBV-Host interaction in nasal NK/T lymphoma and chronic acvtive EBV infection
GEO Series GSE2432. Homo sapiens. 18 samples. Type: Expression profiling by array.
Extension of O-linked mannosylation in the Golgi is critical for cell wall integrity signaling and interaction with host cells in Cryptococcus neoformans pathogenesis
GEO Series GSE198875. Cryptococcus neoformans. 8 samples. Type: Expression profiling by high throughput sequencing.
Neonatal microbes shape islet-immune interactions that determine life-long host metabolic capacity [scRNA-seq and bulk RNA-seq].
GEO Series GSE243754. Mus musculus. 59 samples. Type: Expression profiling by high throughput sequencing.
Host-microbe interactions and changes during intestinal epithelial cell death-dependent dysbiosis
GEO Series GSE244920. Escherichia coli. 24 samples. Type: Expression profiling by high throughput sequencing.
Systematic discovery and functional interrogation of SARS-CoV-2 viral RNA-host protein interactions during infection
GEO Series GSE167341. Homo sapiens; Chlorocebus sabaeus. 66 samples. Type: Other; Expression profiling by high throughput sequencing.
Identification of entertoxigenic Escherichia coli genes transcriptionally altered with the interaction of host cells
GEO Series GSE40427. Shigella; Escherichia coli O139:H28 str. E24377A; Escherichia coli. 21 samples. Type: Expression profiling by array.
New insight into a host-pathogen interaction unveiled by transcriptomics response of the global insect pest Plutella xylostella to a fungal pathogen
GEO Series GSE72383. Plutella xylostella. 6 samples. Type: Expression profiling by high throughput sequencing.
The Identification and Characterization of Sindbis Virus RNA:Host Protein Interactions
GEO Series GSE103693. Homo sapiens. 5 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.