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440
datasets available to search
ShareScore release 0.9.0
Dataset results
440 results for “Potato”
Gene expression profiling during storage root formation in sweet potato
GEO Series GSE13809. Ipomoea batatas. 104 samples. Type: Expression profiling by array.
Potato responses to cold, heat and salt stress
GEO Series GSE8205. Solanum tuberosum. 72 samples. Type: Expression profiling by array.
Expression profile of potato plants after inoculation with endophytes
GEO Series GSE12862. Solanum tuberosum. 26 samples. Type: Expression profiling by array.
Profiling gene expression levels to investigate the degree of substantial equivalence between GM and non-GM potato
GEO Series GSE8258. Solanum tuberosum. 19 samples. Type: Expression profiling by array.
Transcriptomic Analysis Reveals Distinct Strategies of Two Potato Cultivars Against Phytophthora infestans and Identifies StWRKY26 as a Positive Regulator of Late Blight Resistance
GEO Series GSE270562. Solanum tuberosum. 12 samples. Type: Expression profiling by high throughput sequencing.
Comparative analysis of chrysanthemum transcriptome in response to infection of three viruses: Cucumber mosaic virus, Tomato spotted wilt virus, and Potato virus X
GEO Series GSE55985. Chrysanthemum. 12 samples. Type: Expression profiling by genome tiling array.
EST mining of yellow potato and gene expression profiling of its infection by P. infestans using SAGE - SOLEXA
GEO Series GSE11781. Solanum phureja. 6 samples. Type: Expression profiling by SAGE.
Transcriptional profiling of two stress responses in potato
GEO Series GSE10487. Solanum tuberosum. 30 samples. Type: Expression profiling by array.
Identification of Gene Expression Patterns During Somatic Embryogenesis in Potato
GEO Series GSE8215. Solanum tuberosum. 28 samples. Type: Expression profiling by array.
The effect of heat stress on the expression profile of potato tuber periderm genes
GEO Series GSE8283. Solanum tuberosum. 28 samples. Type: Expression profiling by array.
Sequences and secondary structures of mutated pre-miRNAs from CRISPR/Cas9-edited MIR160a, MIR160b and MIR390a genes of potato
<p><strong>Genotypisation of transfected protoplasts</strong> (folder<strong> “Transfected protoplasts”</strong>)</p> <p>Genomic DNA isolated from transfected and non-transfected protoplast of cv. Desiree was used as a template to amplify approximately 800 bp-long region surrounding coding sequence for miR160a-5p, miR160b-5p and miR390a-5p, encoded by <em>MIR160a</em>, <em>MIR160b</em> and <em>MIR390a</em> genes, respectively. To determine types of mutations and polymorphism, PCR products were cloned into pJET, transformed into <em>E. coli</em>, isolated from 9 or 10 colonies per PCR product and Sanger sequenced with primers specific for amplicons from both directions.</p> <p><strong>Genotypisation of transgenic lines</strong> (folder<strong> “Transgenic potato”</strong>)</p> <p>Approximately 800 bp-long region surrounding coding sequence for each miRNA was amplified from genomic DNA isolated from CRISPR-edited <em>MIR160a</em> (cr-<em>MIR160a</em>), <em>MIR160b </em>(cr-<em>MIR160b</em>) and <em>MIR390a</em> (cr-<em>MIR390a</em>) transgenic and non-transgenic plants (NT; cv. Rywal and cv. Desiree). For the screening of transgenic lines with desired mutations, PCR products were Sanger sequenced (subfolder <strong>“PCR amplicons miRNA”</strong>). To determine types of mutations and polymorphism, PCR products were for the selected transgenic lines and NT plants cloned into pJET, transformed into E. coli, isolated from 9 or 10 colonies per PCR product and Sanger sequenced with primers specific for amplicons from both directions (subfolder <strong>“pJET_miRNA”</strong>).</p> <p><strong>Secondary structures of pre-miRNA precursors</strong> (folder <strong>“Secondary structures”</strong>)</p> <p>Precursor sequences of wild-type potato <em>MIR160a</em> and <em>MIR160b</em> were obtained from miRBase (https://www.mirbase.org/; Accession No. MI0025955, MI0025956) and of wild-type potato <em>MIR390a</em> from the study of Križnik <em>et al.</em>, 2017 (Križnik <em>et al.</em>, 2017) (subfolder <strong>“</strong><strong>WT pre-miRNAs</strong><strong>“</strong>). The mutated pre-miRNAs of cr-<em>MIR160a</em>, cr-<em>MIR160b</em> and cr-<em>MIR390a</em> transgenic lines were extracted from Sanger sequencing results (subfolder <strong>“pJET_miRNA”</strong>). The secondary structures were drawn and miRNA/miRNA* duplex regions were highlighted (orange – 5p miRNA coding region, blue – 3p miRNA coding region) using RNA Folding/Annotation tool of The Small RNA Workbench v4.5 (Stocks <em>et al.</em>, 2018) (subfolders <strong>“Desiree” </strong>and<strong> “Rywal”</strong>).</p>
Potato Encyclopedia
GEO Series GSE10490. Solanum tuberosum. 36 samples. Type: Expression profiling by array.
Potato tuber development
GEO Series GSE5360. Solanum tuberosum. 22 samples. Type: Expression profiling by array.
Local and systemic gene expression in potato infected with PVY
GEO Series GSE10488. Solanum tuberosum. 26 samples. Type: Expression profiling by array.
Low temperature sweetening of potato tubers
GEO Series GSE10483. Solanum tuberosum. 30 samples. Type: Expression profiling by array.
Transcriptomes of in vitro young leaves in eleven potato landraces
GEO Series GSE137781. Solanum tuberosum; Solanum x curtilobum; Solanum tuberosum subsp. andigenum; Solanum phureja; Solanum stenotomum subsp. goniocalyx; Solanum stenotomum subsp. stenotomum; Solanum x juzepczukii; Solanum chaucha; Solanum ahanhuiri. 11 samples. Type: Expression profiling by high throughput sequencing.
Potato cyst nematode repsonses in potato
GEO Series GSE8220. Solanum tuberosum. 26 samples. Type: Expression profiling by array.
Gene expression after SPVD infection in resistant and susceptible sweet potato cultivars
GEO Series GSE18869. Ipomoea batatas. 64 samples. Type: Expression profiling by array.
Analysis of Potato Smooth Skin Mutant Susceptible to Powdery Scab Disease
GEO Series GSE10485. Solanum tuberosum. 15 samples. Type: Expression profiling by array.
Exploring Biodiversity in Andean Potato Varieties
GEO Series GSE8207. Solanum tuberosum. 30 samples. Type: Expression profiling by array.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.