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984 results for “migratory”

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Data from: Loss of functional connectivity in migration networks induces population decline in migratory birds

Migratory birds rely on a habitat network along their migration routes by temporarily occupying stopover sites between breeding and non-breeding grounds. Removal or degradation of stopover sites in a network might impede movement, and thereby reduce migration success and survival. The extent to which the breakdown of migration networks, due to changes in land use, impacts the population sizes of migratory birds is poorly understood. We measured the functional connectivity of migration networks of waterfowl species that migrate over the East Asian-Australasian Flyway from 1992-2015. We analysed the relationship between changes in non-breeding population sizes and changes in functional connectivity, while taking into account other commonly-considered species traits, using a Phylogenetic Linear Mixed Model. We found that population sizes significantly declined with a reduction in the functional connectivity of migration networks; no other predictor variables were important. We conclude that the current decrease in functional connectivity, due to habitat loss and degradation in migration networks, can negatively and crucially impact population sizes of migratory birds. Our findings provide new insights into the underlying mechanisms that affect population trends of migratory birds under environmental changes. Establishment of international agreements leading to the creation of systematic conservation networks associated with migratory species' distributions and stopover sites may safeguard migratory bird populations.

opencc-zeroJun 2019View details →
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Data from: A full annual perspective on sex-biased migration timing in long-distance migratory birds

In many taxa, the most common form of sex-biased migration timing is protandry – the earlier arrival of males at breeding areas. Here we test this concept across the annual cycle of long-distance migratory birds. Using more than 350 migration tracks of small-bodied trans-Saharan migrants, we quantify differences in male and female migration schedules and test for proximate determinants of sex-specific timing. In spring, males on average departed from the African non-breeding sites about 3 days earlier and reached breeding sites ca. 4 days ahead of females. In autumn, males started migration about 2 days earlier, but this difference did not carry-over to arrival at the non-breeding sites. A cross-species comparison revealed large variation in the level of protandry and protogyny across the annual cycle. While we found tight links between individual timing of departure and arrival within each migration season, only for males the timing of spring migration was linked to the timing of previous autumn migration. In conclusion, our results demonstrate that protandry is not exclusively a reproductive strategy but rather occurs year-round and the two main proximate determinants for the magnitude of sex-biased arrival times in autumn and spring are sex-specific differences in departure timing and migration duration.

opencc-zeroDec 2018View details →
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Data from: Genetic assignment with isotopes and habitat suitability (GAIAH), a migratory bird case study

1. Identifying migratory connections across the annual cycle is important for studies of migrant ecology, evolution, and conservation. While recent studies have demonstrated the utility of high-resolution SNP-based genetic markers for identifying population-specific migratory patterns, the accuracy of this approach relative to other intrinsic tagging techniques has not yet been assessed. 2. Here, using a straightforward application of Bayes' Rule, we develop a method for combining inferences from high-resolution genetic markers, stable isotopes, and habitat suitability models, to spatially infer the breeding origin of migrants captured anywhere along their migratory pathway. Using leave-one-out cross validation, we compare the accuracy of this combined approach with the accuracy attained using each source of data independently. 3. Our results indicate that when each method is considered in isolation, the accuracy of genetic assignments far exceeded that of assignments based on stable isotopes or habitat suitability models. However, our joint assignment method consistently resulted in small, but informative increases in accuracy and did help to correct misassignments based on genetic data alone. We demonstrate the utility of the combined method by identifying previously undetectable patterns in the timing of migration in a North American migratory songbird, the Wilson's warbler. 4. Overall, our results support the idea that while genetic data provides the most accurate method for tracking animals using intrinsic markers when each method is considered independently, there is value in combining all three methods. The resulting methods are provided as part of a new computationally-efficient R-package, GAIAH, allowing broad application of our statistical framework to other migratory animal systems.

opencc-zeroDec 2016View details →
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Data from: Differential migratory timing of western populations of Wilson's Warblers revealed by mitochondrial DNA and stable isotopes

Molecular markers and stable isotopes have provided important insights into the migratory connectivity of small landbirds. Research integrating these two methods has primarily focused on linking breeding and wintering sites, rather than focusing on timing of migratory movement of different breeding populations. We used mitochondrial DNA and isotopic markers to infer the timing of various breeding populations of migrating Wilson's Warblers (Cardellina pusilla) moving through a migratory stopover site, demonstrating the value of multiple sources of information in estimating the origin of migrants. Using mixed-stock analysis, we found that early spring migrants sampled in southwestern Arizona were dominated by warblers migrating to the West Coast of the contiguous United States, whereas later migrants included a large pulse of birds migrating to Alaska and western Canadian provinces. Stable hydrogen isotope data from individual birds showed the same timing pattern as genetic data. Had we used stable isotopes alone, we would not have been able to infer whether birds later in the migration season were most likely migrating to Alaska or the Interior West, given the large overlap in isotope values between those regions. The lack of mitochondrial group 2, common in the Interior West, in late-season migrants strongly suggests that these birds were migrating to breeding areas in Alaska or other northern regions. Studies that reveal the timing of migration of different breeding populations through stopover sites lay the foundation for more in-depth examination of seasonal interactions between migration and the stationary phases of the annual cycle.

opencc-zeroDec 2012View details →
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Data from: Social learning of migratory performance

Successful bird migration can depend on individual learning, social learning, and innate navigation programs. Using 8 years of data on migrating whooping cranes, we were able to partition genetic and socially learned aspects of migration. Specifically, we analyzed data from a reintroduced population wherein all birds were captive bred and artificially trained by ultralight aircraft on their first lifetime migration. For subsequent migrations, in which birds fly individually or in groups but without ultralight escort, we found evidence of long-term social learning, but no effect of genetic relatedness on migratory performance. Social learning from older birds reduced deviations from a straight-line path, with 7 years of experience yielding a 38% improvement in migratory accuracy.

opencc-zeroDec 2012View details →
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Data from: The cost of migratory prey: seasonal changes in semi-domestic reindeer distribution influences breeding success of Eurasian lynx in northern Norway

Migratory prey is a widespread phenomenon that has implications for predator–prey interactions. By creating large temporal variation in resource availability between seasons it becomes challenging for carnivores to secure a regular year-round supply of food. Some predators may respond by following their migratory prey, however, most predators are sedentary and experience strong seasonal variation in resource availability. Increased predation on alternative prey may dampen such seasonal resource fluctuations, but reduced reproduction rates in predators is a predicted consequence of migratory primary prey behavior that has received little empirical attention. We used data from 23 GPS collared Eurasian lynx Lynx lynx monitored during 2007–2013 in northern Norway, to examine how spatio-temporal variation in the migratory behavior of semi-domestic reindeer Rangifer tarandus influences lynx spatial organization and reproductive success using estimates of seasonal home range overlap and breeding success. We found that lynx of both sexes maintained seasonally stable home ranges and exhibited site fidelity across years, independent of whether they had access to reindeer throughout the year or experienced a scarcity of reindeer in winter due to migration. However, lynx without access to reindeer in winter showed a decreased probability of reproducing and a tendency for lowered kitten survival into their first winter, when compared to female lynx with reindeer available year around. This supports the hypothesis that sedentary predators experience demographic costs in systems with migratory primary prey. Changes in the migratory behavior of ungulates, including disrupted migrations, is therefore likely to have bottom–up effects on the population dynamics of sedentary predators as well as the previously documented consequences for ungulate population dynamics.

opencc-zeroDec 2015View details →
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Data from: Overwintering strategies of migratory birds: a novel approach for estimating seasonal movement patterns of residents and transients

1. Our understanding of movement patterns in wildlife populations has played an important role in current ecological knowledge, and can inform landscape conservation decisions. Direct measures of movement can be obtained using marked individuals, but this requires tracking individuals across a landscape or multiple sites. 2. We demonstrate how movements can be estimated indirectly using single-site, capture–mark–recapture (CMR) data with a multistate open robust design with state uncertainty model (MSORD-SU). We treat residence and transience as two phenotypic states of overwintering migrants, and use time- and state-dependent probabilities of site entry and persistence as indirect measures of movement. We applied the MSORD-SU to data on eight species of overwintering Neotropical birds collected in 14 countries between 2002 and 2011. In addition to entry and persistence probabilities, we estimated proportions of residents at a study site, and mean residence times. 3. We identified overwintering movement patterns and residence times that contrasted with prior categorizations of territoriality. Most species showed evidence of residents entering sites at multiple time intervals, with transients tending to enter between peak resident movement times. Persistence and the proportion of residents varied by latitude, but were not always positively correlated for a given species. 4. Synthesis and applications: Our results suggest that migratory songbirds commonly move among habitats during the overwintering period. Substantial proportions of populations appear to be comprised of transient individuals, and residents tend to persist at specific sites for relatively short periods of time. This information on persistence and movement patterns should be explored for specific habitats to guide landscape management on the wintering grounds, such as determining which habitats are conserved or restored as part of certification programs of tropical agroforestry crops. We suggest that research and conservation efforts on Neotropical migrant songbirds focus on identifying landscape configurations and regional habitat networks that support these diverse overwintering strategies to secure full life cycle conservation.

opencc-zeroDec 2015View details →
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Data from: State-space modelling of the flight behaviour of a soaring bird provides new insights to migratory strategies

1. Characterizing the spatiotemporal variation of animal behaviour can elucidate the way individuals interact with their environment and allocate energy. Increasing sophistication of tracking technologies paired with novel analytical approaches allows the characterisation of movement dynamics even when an individual is not directly observable. 2. In this study, high-resolution movement data collected via global positioning system (GPS) tracking in three dimensions were paired with topographical information and used in a Bayesian state-space model to describe the flight modes of migrating golden eagles (Aquila chrysaetos) in eastern North America. 3. Our model identified five functional behavioural states, two of which were previously undescribed variations on thermal soaring. The other states comprised gliding, perching and orographic soaring. States were discriminated by movement features in the horizontal (step length and turning angle) and vertical (change in altitude) planes, and by the association with ridgelines promoting wind deflection. Tracked eagles spent 2%, 31%, 38%, 9% and 20% of their day time in directed thermal soaring, gliding, convoluted thermal soaring, perching and orographic soaring, respectively. The analysis of the relative occurrence of these flight modes highlighted yearly, seasonal, age, individual and sex differences in flight strategy and performance. Particularly, less energy-efficient orographic soaring was more frequent in autumn, when thermals were less available. Adult birds were also better at optimising energy efficiency than sub-adults. 4. Our approach represents the first example of a state-space model for bird flight mode using altitude data in conjunction with horizontal locations, and is applicable to other flying organisms where similar data are available. The ability to describe animal movements in a three-dimensional habitat is critical to advance our understanding of the functional processes driving animals' decisions.

opencc-zeroDec 2017View details →
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Data from: Cyprus wheatears Oenanthe cypriaca likely reach sub-Saharan African wintering grounds in a single migratory flight

Long-distance migratory flights with multiple stop-overs, multiple wintering sites, and small-scale connectivity in Afro-Palearctic migrants are likely to increase their vulnerability to environmental change and lead to declining populations. Here we present the migration tracks and wintering locations of the first six Cyprus wheatears to be tracked with geolocators: a species with high survival and a stable population. We therefore predicted a non-stop flight from Cyprus to sub-Saharan wintering grounds, a single wintering area for each individual and a wide spread of wintering locations representing low migratory connectivity at the population level. The sub-Saharan wintering grounds in south Sudan, Sudan and Ethiopia were likely reached by a single flight of an average straight-line distance of 2538 km in ca 60 h, with an average minimum speed of 43.1 km h–1. The high speed of migration probably ruled out stop-overs greater than a few hours. Cyprus wheatears migrated from Cyprus in mid-late October and most probably remained at a single location throughout winter; three out of five birds with available data may have used a second site < 100 km away during February; all returned between 7–22 March when accurate geolocation data are not possible due to the equinox. Wintering locations were spread over at least 950 km. There were no tag effects on survival. Cyprus wheatears showed a migratory strategy in accordance with their observed high survival rate and demonstrated a routine flight range that allows much of the Mediterranean and the Sahara to be crossed in a rapid two and a half-day flight.

opencc-zeroDec 2015View details →
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Data from: Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow

Neutral genetic markers are routinely used to define distinct units within species that warrant discrete management. Human-induced changes to gene flow however may reduce the power of such an approach. We tested the efficiency of adaptive vs. neutral genetic markers in differentiating temporally divergent migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid high gene flow owing to artificial propagation and habitat alteration. We compared seven putative migration timing genes to ten microsatellite loci in delineating three migratory groups of Chinook in the Feather River, CA: offspring of fall run hatchery broodstock that returned as adults to freshwater in fall (fall run), spring run offspring that returned in spring (spring run), and fall run offspring that returned in spring (FRS). We found evidence for significant differentiation between the fall and federally-listed threatened spring groups based on divergence at three circadian clock genes (OtsClock1b, OmyFbxw11 and Omy1009UW), but not neutral markers. We thus demonstrate the importance of genetic marker choice in resolving complex life history types. These findings directly impact conservation management strategies and add to previous evidence from Pacific and Atlantic salmon indicating that circadian clock genes influence migration timing.

opencc-zeroDec 2012View details →
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Data from: Tracking ice phenology by migratory waterbirds: settling phenology and breeding success of species with divergent population trends

<p>Dependence on climate-driven environmental cues in the initiation of life cycle stages is a critical attribute when assessing vulnerability of species to climate change impacts. This study focused on spring ice phenology as a cue to the settling of migratory waterbirds, asking whether there is an asynchrony between ice phenology and setting phenology that could affect breeding success of six species with divergent population trends. In the 37 study lakes in southeastern Finland, the ice-out date not only varied considerably between years, but became progressively earlier during the study period, 1991–2018. Settling phenology of all species tracked inter-annual variation in ice phenology. However, the degree of asynchrony between ice phenology and settling phenology varied between species, allowing discrimination between early and late settlers. Considerable inter-annual variation also occurred within species, but in only one species did the degree of asynchrony correlate with the ice-out date: for the horned grebe Podiceps auritus an earlier ice-out date meant greater asynchrony between settling phenology and ice phenology. The degree of asynchrony between settling phenology and ice phenology did not affect breeding success in any species. However, ice phenology per se affected breeding success of horned grebes: earlier ice-out was associated with lower annual breeding success. Breeding numbers of horned grebe showed a long-term decline. Results suggest that short-distance migratory birds are able to respond to climate change-driven phenological changes in their breeding environments, and that this ability may not depend on the relative timing of breeding.</p>

opencc-zeroOct 2019View details →
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Data from: Carry-over effects of conditions at the wintering grounds on breeding plumage signals in a migratory bird: roles of phenotypic plasticity and selection

To understand the consequences of ever-changing environment on the dynamics of phenotypic traits, distinguishing between selection processes and individual plasticity is crucial. We examined individual consistency/plasticity in several male secondary sexual traits expressed during the breeding season (white wing and forehead patch size, UV reflectance of white wing patch and dorsal melanin colouration) in a migratory pied flycatcher (Ficedula hypoleuca) population over an 11-year period. Furthermore, we studied carry-over effects of three environmental variables (NAO, a climatic index; NDVI, a vegetation index; and rainfall) at the wintering grounds (during pre-breeding moult) on the expression of these breeding plumage traits of pied flycatcher males at individual- and population-levels. While NAO correlates negatively with moisture in West Africa, NDVI correlates positively with primary production. Forehead patch size and melanin colouration were highly consistent within individuals among years, while the consistency of the other two traits was moderate. Wing patch size decreased with higher NAO and increased with higher rainfall and NDVI at the individual-level. Interestingly, small-patched males suffered lower survival during high NAO winters than large-patched males, and vice versa during low NAO winters. These counteracting processes meant that the individual-level change was masked at the population-level where no relationship was found. Our results provide a good example of how variation in the phenotypic composition of a natural population can be a result of both environment-dependent individual plasticity and short-term microevolution. Moreover, when plasticity and viability selection operate simultaneously, their impacts on population composition may not be evident.

opencc-zeroDec 2015View details →
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Data from: A migratory northern ungulate in the pursuit of spring: jumping or surfing the green wave?

The Forage Maturation Hypothesis (FMH) states that herbivores migrate along a phenological gradient of plant development in order to maximize energy intake. Despite strong support for the FMH, the actual relationship between plant phenology and ungulate movement has remained enigmatic. We linked plant phenology (MODIS-NDVI) and space use of 167 migratory and 78 resident red deer (Cervus elaphus) using a space-time-time matrix of "springness", defined as the instantaneous rate of green-up (IRG). Consistent with the FMH, migrants experienced substantially greater access to early plant phenology than residents. Deer were also more likely to migrate in areas where migration led to greater gains in springness. Rather than "surfing the green wave" during migration, migratory red deer moved rapidly from the winter to the summer range, thereby "jumping the green wave". However, migrants, and to a lesser degree residents, did track phenological green-up through parts of the growing season by making smaller-scale adjustments in habitat use. We conclude that, whereas in some systems migration itself is a way to surf the green wave, in others it may simply be a means to re-connect with phenological spring at the summer range.

opencc-zeroDec 2011View details →
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Data from: Ecological causes and consequences of intratropical migration in temperate-breeding migratory birds

New discoveries from direct tracking of temperate-breeding passerines show that intratropical migration (ITM) occurs in a growing number of species, which has important implications for understanding their evolution of migration, population dynamics, and conservation needs. Our large sample size ([Formula: see text]) for purple martins (Progne subis subis) tracked with geolocators to winter sites in Brazil, combined with geolocator deployments at breeding colonies across North America, allowed us to test hypotheses for ITM, something which has not yet been possible to do for other species. ITM in purple martins was not obligate; only 44% of individuals exhibited ITM, and movements were not coordinated in time or space. We found no evidence to support the resource hypothesis; rainfall and temperature experienced by individual birds during their last 2 weeks at their first roost site were similar to conditions at their second roost site after ITM. Birds generally migrated away from the heavily forested northwestern Amazon to less forested regions to the south and east. ITM in this aerial insectivore appears to support the competition-avoidance hypothesis and may be triggered by increasing local density in the core wintering region. Full life cycle models and migratory networks will need to incorporate ITM to properly address seasonal carryover effects and identify which wintering regions are most important for conservation.

opencc-zeroDec 2015View details →
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Data from: Identification of migratory bird flyways in North America using community detection on biological networks

Migratory behavior of waterfowl populations in North America has traditionally been broadly characterized by four north-south flyways, and these flyways have been central to the management of waterfowl populations for more than 80 years. However, previous flyway characterizations are not easily updated with current bird movement data and fail to provide assessments of the importance of specific geographical regions to the identification of flyways. Here, we developed a network model of migratory movement for four waterfowl species —mallard (Anas platyrhnchos), northern pintail (A. acuta), American green-winged teal (A. carolinensis), and Canada goose (Branta canadensis) — in North America using bird band and recovery data. We then identified migratory flyways using a community detection algorithm and characterize the importance of smaller geographic regions in identifying flyways using a novel metric, the consolidation factor. We identified four main flyways for mallards, northern pintails, and American green-winged teal with the flyway identification in Canada geese exhibiting higher complexity. For mallards, flyways were relatively consistent through time. However, consolidation factors revealed that for mallards and green-winged teal the presumptive Mississippi flyway was potentially a zone of high mixing between other flyways. Our results demonstrate that the network approach provides a robust method for flyway identification that is widely applicable given the relatively minimal data requirements and is easily updated with future movement data to reflect changes in flyway definitions and management goals.

opencc-zeroDec 2014View details →
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Data from: Migratory plasticity is not ubiquitous among large herbivores

1. The migratory movements of wild animals can promote abundance and support ecosystem functioning. For large herbivores, mounting evidence suggests that migratory behavior is an individually variable trait, where individuals can easily switch between migrant and resident tactics. The degree of migratory plasticity, including whether and where to migrate, has important implications for the ecology and conservation of large herbivores in a changing world. 2. Mule deer (Odocoileus hemionus) are an iconic species of western North America, but are notably absent from the body of literature that suggests large herbivore migrations are highly plastic. We evaluated plasticity of migration in female mule deer using longitudinal GPS data collected from 312 individuals across 9 populations in the western US, including 882 animal-years (801 migrants and 81 residents). 3. We followed both resident and migratory mule deer through time to determine if individual animals switched migratory behaviors (i.e., whether to migrate) from migratory to residency, or vice versa. Additionally, we examined the fidelity of individuals to their migration routes (i.e., where to migrate) to determine if they used the same routes year after year. We also evaluated if age and reproductive status affected propensity to migrate or fidelity to migratory routes. 4. Our results indicate that mule deer, unlike other large herbivores, have little or no plasticity in terms of whether or where they migrate. Resident deer remained residents, and migrant deer remained migrants, regardless of age, reproductive status, or number of years monitored. Further, migratory individuals showed strong fidelity (&gt;80%) to their migration routes year after year. 5. Our study clearly shows that migration plasticity is not ubiquitous among large herbivores. Because of their rigid migratory behavior, mule deer may not adapt to changing environmental conditions as readily as large herbivores with more plastic migratory behavior (e.g., elk). The fixed migratory behaviors of mule deer make clear that conservation efforts aimed at traditional seasonal ranges and migration routes are warranted for sustaining this iconic species that continues to decline across its range.

opencc-zeroDec 2017View details →
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Data from: Activity and migratory flights of individual free-flying songbirds throughout the annual cycle: method and first case study

We describe a method and device (&lt; 1.2 g) for recording, processing and storing data about activity and location of individuals of free-living songbirds throughout the annual cycle. Activity level was determined every five minutes from five 100 ms samples of accelerometer data with 5 s between the sampling events. Activity levels were stored on an hourly basis throughout the annual cycle, allowing periods of resting/sleep, continuous flight and intermediate activity (foraging, breeding) to be distinguished. Measurements from a light sensor were stored from preprogrammed key stationary periods during the year to provide control information about geographic location. Successful results, including annual actogram, were obtained for a red-backed shrike Lanius collurio carrying out its annual loop migration between northern Europe and southern Africa. The shrike completed its annual migration by performing &gt; 66 (max. 73) nocturnal migratory flights (29 flights in autumn and &gt; 37, max. 44, in spring) adding up to a total of &gt; 434 (max. 495) flight hours. Migratory flights lasted on average 6.6 h with maximum 15.9 h. These flights were aggregated into eight travel episodes (periods of 4–11 nights when flights took place on the majority of nights). Daytime resting levels were much higher during the winter period compared to breeding and final part of spring migration. Daytime resting showed peaks during days between successive nocturnal flights across Sahara, continental Africa and the Arabian Peninsula, indicating that the bird was mostly sleeping between these long migratory flights. Annual activity and flight data for free-living songbirds will open up many new research possibilities. Main topics that can be addressed are e.g. migratory flight performance (total flight investment, numbers and characteristics of flights), timing of stationary periods, activity patterns (resting/sleep, activity level) in different phases of the annual cycle and variability in the annual activity patterns between and within individuals.

opencc-zeroDec 2015View details →
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Data from: Disentangling the effects of environmental conditions on wintering and breeding grounds on age-specific survival rates in a trans-Saharan migratory raptor

Migratory species are subject to environmental variability occurring on breeding and wintering grounds. Estimating the relative contribution of environmental factors experienced sequentially during breeding and wintering, and their potential interaction, to the variation of survival is crucial to predict population viability of migratory species. Here we investigated this issue for the Montagu's harrier Circus pygargus, a trans-Saharan migrant. We analysed capture-recapture data from a 29-yr long monitoring of wing-tagged offspring and adults at two study sites in France (Rochefort-RO &amp; Maine-et-Loire-ML). The study period covers a climatic shift occurring in the Sahel with increasing rainfall following a period of droughts (Sahel greening). We found that harriers' adult survival in RO (between 1988 and 2005) varied over time and was sensitive to the interaction between the amount of rainfall in the Sahel and the annual mean breeding success, two proxies of prey availability. The occurrence of adverse conditions on breeding and wintering grounds in the same year decreased survival from 0.70-0.77 to 0.48 ± 0.05. Juvenile survival in RO was slightly more sensitive to conditions in Europe than in the Sahel. Unexpectedly, lower survival rates were found in years with higher mean breeding success, suggesting compensatory density feedbacks may operate. By contrast, adult survival in ML, monitored between 1999 and 2017, was higher compared to RO (0.76 ± 0.03 vs. 0.66 ± 0.02), remained constant and unaffected by any proxy of prey availability. This difference seems consistent with the fact that harriers in ML experienced better and especially less variable environmental conditions during breeding and wintering seasons compared to RO. Overall, we showed that survival of a migratory bird is sensitive to the level of variability in environmental conditions and that adverse conditions on wintering grounds can amplify the negative effects of conditions during the previous breeding season on birds' survival.

opencc-zeroAug 2019View details →
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Data from: Genetic variation and seasonal migratory connectivity in Wilson's warblers (Wilsonia pusilla): species-level differences in nuclear DNA between western and eastern populations

There is growing interest in understanding patterns of seasonal migratory connectivity between breeding and wintering sites, both because differences in migratory behavior can be associated with population differentiation and because knowledge of migratory connectivity is essential for understanding the ecology, evolution, and conservation of migratory species. We present the first broad survey of geographic variation in the nuclear genome of breeding and wintering Wilson's warblers (Wilsonia pusilla), which have previously served as a research system for the study of whether genetic markers and isotopes can reveal patterns of migratory connectivity. Using 153 samples surveyed at up to 257 variable amplified fragment length polymorphism (AFLP) markers, we show that Wilson's warblers consist of highly distinct western and eastern breeding groups, with all winter samples grouping with the western breeding group. Within the west there is weak geographic differentiation, at a level insufficient for use in assignment of wintering samples to specific areas. The distinctiveness of western and eastern genetic groups, with no known intermediates, strongly suggests that these two groups are cryptic species. Analysis of mitochondrial cytochrome b sequence variation shows that the estimated coalescence time between western and eastern clades is roughly 2.3 million years ago, a surprisingly old time of divergence that is more typical of distinct species than of subspecies. Given their morphological similarity but strong genetic differences, western and eastern Wilson's warblers present a likely case of association between divergence in migratory behavior and the process of speciation.

opencc-zeroDec 2010View details →
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Data from: A range-wide domino effect and resetting of the annual cycle in a migratory songbird

Latitudinal differences in timing of breeding are well documented but how such differences carry over to influence timing of events in the annual cycle of migratory birds is not well understood. We examined geographic variation in timing of events throughout the year using light-level geolocator tracking data from 133 migratory tree swallows (Tachycineta bicolor) originating from 12 North American breeding populations. A swallow's breeding latitude influenced timing of breeding, which then carried over to affect breeding ground departure. This resulted in subsequent effects on the arrival and departure schedules at fall stopover locations and timing of arrival at non-breeding locations. This "domino effect" between timing events was no longer apparent by the time individuals departed for spring migration. Our range-wide analysis demonstrates the lasting impact breeding latitude can have on migration schedules but also highlights how such timing relationships can reset when individuals reside at non-breeding sites for extended periods of time.

opencc-zeroDec 2017View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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