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Optimal vaccination at high reproductive numbers: sharp transitions and counterintuitive allocations
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Data from: Present and future suitability of invasive and urban vectors through an environmentally-driven mosquito reproduction number
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Prickly postglacial pioneers: freshwater plankton community composition influences fatty acid desaturase (FADS2) copy number in Southern Greenland threespine sticklebacks
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Sevilleta LTER Metstation number 49, precipition, daily raw and gap filled from 1992 - 2015
This file contains daily meteorological data collected from a network of 10 permanent weather stations on the Sevilleta National Wildlife Refuge. Multiple csv files were downloaded from the Sevilleta LTER data-portal (http://tierra.unm.edu/search/climate/search.php) and joined together in excel. Any missing data cells were gap-filled from the nearest meteorological station using Met_gap_fill.r. These data were sub-set for station 49, the station closest to our study site.
CSM01 Seasonal Summary of Numbers of Small Mammals on 14 LTER Traplines in Prairie Habitats at Konza Prairie (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/343/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-knz/88/8. The abstract below was extracted from the Level 0 data package and is included for context: Data set contains seasonal summaries (spring and autumn) of the number of individuals of each species of small mammal captured (relative abundance) on each grassland trapline. Each record contains year, season, trapline and number of individuals captured of each species. These live trap records are based on daily captures during two 4-day trapping periods in spring (late February to early April) and autumn (early October to mid-November) for each of 14 permanent traplines established on seven fire-grazing treatments (two traplines per treatment). These seven fire-grazing treatments include three sites that are grazed by bison (1 unburned, 1 annual burn and 1 4-year burn) and four sites that are not grazed by bison (1 unburned, 1 annual burn and 2 4-year burn).
Total numbers per square meter and taxa of insects taken during a survey of headwater streams in the Toolik Lake region during the summer of 2001, Arctic LTER 2001.
A Surber sampler (25 X 25 cm frame fitted with a 243 um mesh net) was used to sample invertebrates on a single date at each site. Five replicates were taken from at least two riffles at each site. Samples were preserved in 4% formaldehyde and transported to Orono, Maine, where invertebrates were removed by hand under 15X magnification and then identified and counted. All values are the mean of five replicates and have been converted to individuals per square meter.
Statewide 2-km raster of number of fires within each 2-km pixel since 1942
This raster contains the count of wildfires from 1942-2010 within each 2-km cell for the state of Alaska. The raster matches SNAP statewide climate rasters in extent and cell size. The geotiff raster is in the Alaska Albers NAD83 coordinate system as an unsigned 4-bit integer with valid pixel values ranging from 1 through 9 as the number of fires within each pixel from 1942 through 2010.
SGS-LTER Standard Met Data: 1986-09-12-2010 CR21x Level 2 Meteorological Data on the Central Plains Experimental Range, Nunn, Colorado, USA 1986 - present, ARS Study Number 4
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. The objective of this study is to collect baseline meteorological data for the CPER. Datasets auto12_climdb and man11_climdb have been processed for quality and missing values. Additional information and referenced materials can be found:http://hdl.handle.net/10217/82146.
SGS-LTER Spatial variability in seed production of the perennial bunchgrass Bouteloua gracilis on the Central Plains Experimental Range, Nunn, Colorado, USA 1992-2005, ARS Study Number 20
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Production of seeds of Bouteloua gracilis was evaluated for a semiarid grassland in northeastern Colorado. Ten locations were chosed to represent the range in soil textures and grazing intensities found at the Central Plains Experiemental Range research site. Number of flowering culms, inforescences and seeds, length of each flowering clum, total biomass or reproductive structures (culms, inforescences and seeds), and basal areas were assessed for each plant sampled. Community-level estimates of density of flowering culms and density of viable seeds are made for each location. Both soil texture and grazing intensity by cattle are important to spatial variability in seed production and other indicators of reproductive effort by B. gracilis. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82281
SGS-LTER Standard Met Data: Cr21x Station 12 - Daily Meteorological Data on the Central Plains Experimental Range in Nunn, Colorado, USA 1986-2010, ARS Study Number 4
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82449. The objective of this study is to collect baseline meteorological data for the CPER. Datasets auto12_climdb and man11_climdb have been processed for quality and missing values.
SGS-LTER Standard Met Data: CR21x Station 12 - Hourly Meteorological Data on the Central Plains Experimental Range Headquarters in Nunn, Colorado, USA 1986-2010, ARS Study Number 4
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82449. The objective of this study is to collect baseline meteorological data for the CPER. Datasets auto12_climdb and man11_climdb have been processed for quality and missing values.
SGS-LTER Standard Met Data: CR21x Station 12 - 15 minute preciptation values from LTER meteorological station on the Central Plains Experimental Range in Nunn, Colorado, USA 1986-1994, ARS Study Number 4
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82449. The objective of this study is to collect baseline meteorological data for the CPER. Datasets auto12_climdb and man11_climdb have been processed for quality and missing values.
SGS-LTER Standard Met Data: CR21x Station 12 - 15 Minute Meteorological Data on the Central Plains Experimental Range in Nunn, Colorado, USA 1995-2010, ARS Study Number 4
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/82449. The objective of this study is to collect baseline meteorological data for the CPER. Datasets auto12_climdb and man11_climdb have been processed for quality and missing values.
SGS-LTER Long-Term Montioring Project: Arthropod Pitfall Trapping on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1998-2006, ARS Study Number 118
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83450. With the exception of heteromyids, eg kangaroo rats and pocket mice, most small rodents in shortgrass steppe are omnivorous. Depending on season, arthropods (insects and arachnids) make up 40-85% of the diet of grasshopper mice and thirteen-lined ground squirrels, the most widespread rodents in northern shortgrass steppe. Small mammals are among the most important predators of ground-dwelling macroarthropods and herbivorous insects provide a direct resource link between weather and plant production. Understanding temporal variability in the abundance of arthropods is central to determining the mechanisms that drive small rodent populations. At present, there are no long-term studies of arthropods in shortgrass steppe, despite the important role that these taxa play in grassland food webs. Beginning in 1998, we implemented field protocols to track changes in relative abundance of terrestrial macroarthropods in grassland and shrub-dominated habitats of shortgrass steppe. Sampling was conducted on the six trapping webs (three upland prairie, three lowland saltbush) where we studied rodent populations, and was conducted approximately monthly from May-September (4-5 sessions/ye
SGS-LTER Long-term Monitoring Project: Carnivore Scat Count on the Central Plains Experimental Range, Nunn, Colorado, USA 1997 -2006, , ARS Study Number 98
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83392 Carnivores are among the most conspicuous, charismatic and economically important mammals in shortgrass steppe, yet relatively is little is known about their populations or of the ecological factors that determine their distribution and abundance, in part because densities tend to be low. Mammalian carnivores represent the top predators in grassland food webs, consuming rodents, rabbits, young ungulates and other small vertebrates. In addition, shortgrass steppe is the primary habitat of the swift fox (Vulpes velox), a species of special conservation concern throughout most of its range. Fox populations are thought to be limited by predation from coyotes (Canis latrans), the most common carnivore in these grasslands and a species of interest, both for its ecological roles and well as a target species for human exploitation, ie hunting and predator control. In 1994, we implemented a low-intensity sampling scheme to monitor long-term changes in relative abundance of mammalian carnivores and help us examine interactions between these predators and their small mammal prey, including rodents and rabbits. We estimated relative abundance of carnivores using scat surveys along a fi
SGS-LTER Long-term Monitoring Project: Spotlight Rabbit Count on the Central Plains Experimental Range, Nunn, Colorado, USA 1994-2006, ARS Study Number 98
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83448. Rabbits are the most important small-mammal herbivores in shortgrass steppe, and may significant influence the physiognomy and population dynamics of herbaceous plants and woody shrubs. Rabbits also are the most important prey of mammalian carnivores such as coyotes and large raptors such as golden eagles and great horned owls. Two hares (Lepus californicus, L. townsendii) and one cottontail rabbit (Sylvilagus audubonii) occur in shortgrass steppe. In 1994, we initiated long-term studies to track changes in relative abundance of rabbits on the Central Plains Experimental Range (CPER). On four nights each year (one night each season, usually on new moon nights in January, April, July, October), we drove a 32-km route consisting of pasture two-track and gravel roads on the CPER. This was the same route as that driven for carnivore scat counts. Surveys began at twilight. Observers with two spotlights sat in the back of a 4WD pick-up driven at <15 mph. We recorded the perpendicular distance (in m) to each rabbit using a meter tape or range finder; the direction of the rabbit relative to the road; and noted if individuals were solitary or in clusters. We also recorded any carni
SGS-LTER Long-Term Monitoring Project: Small Mammals on Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1994 -2006, ARS Study Number 118
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83452. Small mammals (rabbits, rodents) are integral components of semiarid ecosystems because of their roles as consumers of plants, seeds and arthropods, as soil disturbance agents, and as food for raptors, snakes and mammalian carnivores. Because of their vagility and intermediate trophic position, populations of small mammals may track changes in vegetation and the abiotic environment that may result from shifts in land-use and other anthropogenic disturbances. However, these populations are variable over space and time, and their response to environmental changes may not be immediately apparent given their behavioral flexibility and relatively long life-spans and generation times. Patterns in the distribution and abundance of small mammals thus may simultaneously reflect and affect the stability of the shortgrass-steppe ecosystem. Long-term studies of population and community dynamics therefore are needed to fully understand the role of small mammals in grassland ecosystems. In 1994, we implemented a sampling scheme to monitor long-term changes in relative abundance of small mammals in representative habitats of shortgrass steppe. We live-trapped nocturnal rodents twice each
SGS-LTER Long-Term Monitoring Project: Spermophilus tridecemlineatus on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1999 -2006, ARS Study Number 118
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83456. Small mammals (rabbits, rodents) are integral components of semiarid ecosystems because of their roles as consumers of plants, seeds and arthropods, as soil disturbance agents, and as food for raptors, snakes and mammalian carnivores. Because of their vagility and intermediate trophic position, populations of small mammals may track changes in vegetation and the abiotic environment that may result from shifts in land-use and other anthropogenic disturbances. However, these populations are variable over space and time, and their response to environmental changes may not be immediately apparent given their behavioral flexibility and relatively long life-spans and generation times. Patterns in the distribution and abundance of small mammals thus may simultaneously reflect and affect the stability of the shortgrass-steppe ecosystem. Long-term studies of population and community dynamics therefore are needed to fully understand the role of small mammals in grassland ecosystems. Thirteen-lined ground squirrels (Spermophilus tridecemlineatus, SPTR) are the most widely distributed rodent species in shortgrass steppe and the most important in terms of abundance and biomass. Like mo
SGS-LTER Long-Term Monitoring Project: Vegetation Cover on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1999 -2006, ARS Study Number 118
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83458. The abundance and diversity of small mammals in shortgrass steppe is strongly influenced by the structure and composition of vegetation. Vegetation structure provides cover from predators and harsh abiotic conditions. Plant species composition affects the types of seeds and herbaceous material available to granivores and herbivores, and influences arthropod populations, which are important prey for the omnivorous species that dominate in shortgrass steppe. Both vegetation structure and plant community composition are sensitive to the availability of precipitation as well as the activity of large mammalian herbivores. In 1999, we began measuring vegetation structure and plant community composition on the three grassland and three shrubland trapping webs where we live-trap small mammals. Vegetation measurements are made once each year, usually in mid-July. Percent canopy cover of each plant species was estimated visually in 30 0.10-m2 Daubenmire quadrats on each web. To estimate habitat structure, we measured the height of grass, forb and shrub plants adjacent to each quadrat, the density of half-shrubs, small mammal mounds and burrows, harvester ant mounds and the dimension
SGS-LTER Long-Term Monitoring Project: Vegetation Structure on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1999 -2006, ARS Study Number 118
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83458. The abundance and diversity of small mammals in shortgrass steppe is strongly influenced by the structure and composition of vegetation. Vegetation structure provides cover from predators and harsh abiotic conditions. Plant species composition affects the types of seeds and herbaceous material available to granivores and herbivores, and influences arthropod populations, which are important prey for the omnivorous species that dominate in shortgrass steppe. Both vegetation structure and plant community composition are sensitive to the availability of precipitation as well as the activity of large mammalian herbivores. In 1999, we began measuring vegetation structure and plant community composition on the three grassland and three shrubland trapping webs where we live-trap small mammals. Vegetation measurements are made once each year, usually in mid-July. Percent canopy cover of each plant species was estimated visually in 30 0.10-m2 Daubenmire quadrats on each web. To estimate habitat structure, we measured the height of grass, forb and shrub plants adjacent to each quadrat, the density of half-shrubs, small mammal mounds and burrows, harvester ant mounds and the dimension
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.