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695
datasets available to search
ShareScore release 0.7.1
Dataset results
695 results for “topologies”
Poised enhancers regulatory activity is topologically facilitated by polycomb [RNA-seq LHX5]
GEO Series GSE89242. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Modular regulation of Myc transcription by a topologically defined enhancer cluster dedicated to pluripotency and early embryonic expression [WGS]
GEO Series GSE222297. Mus musculus. 1 samples. Type: Other.
Comprehensive characterization of neutrophil genome topology
GEO Series GSE93127. Mus musculus. 51 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other.
Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation [RNA_3populations_LSK_GMP_CFUE]
GEO Series GSE138006. Mus musculus. 21 samples. Type: Expression profiling by high throughput sequencing.
Chromosome topology shapes neuronal non-CG DNA methylation to influence MeCP2-mediated enhancer repression
GEO Series GSE123373. Mus musculus. 116 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
An increase in negative supercoiling in bacteria reveals topology-reacting gene clusters and a homeostatic response mediated by the DNA topoisomerase I gene [array]
GEO Series GSE77587. Streptococcus pneumoniae R6. 8 samples. Type: Expression profiling by array.
Exclusion of m6A from splice-site-proximal regions by the exon-junction complex dictates m6A topologies and mRNA stability
GEO Series GSE204980. Homo sapiens; Mus musculus. 250 samples. Type: Expression profiling by high throughput sequencing.
Chromosome topology of the EGFR locus in glioblastoma
GEO Series GSE139414. Homo sapiens. 10 samples. Type: Other.
Regions of very low H3K27me3 partition the Drosophila genome into topological domains [HiC-seq]
GEO Series GSE85503. Drosophila melanogaster. 2 samples. Type: Other.
Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State During Somatic Cell Reprogramming
GEO Series GSE68582. Mus musculus. 20 samples. Type: Other; Expression profiling by high throughput sequencing.
CRISPR modeling reveals transcriptional and functional changes associated with structural variant disruption to MEF2C and 5q14.3 topological organization in neuronal lineages
GEO Series GSE204778. Homo sapiens. 327 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Distinct structural transitions of chromatin topological domains coordinate hormone-induced gene regulation
GEO Series GSE53463. Homo sapiens. 18 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome wide expression data and chromatin changes data of murine cardiac fibroblasts in different topological states
GEO Series GSE113277. Mus musculus. 31 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [ChIP-Seq]
GEO Series GSE98245. Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cis-Regulatory Element Hijacking by Structural Variants Overshadows Topological Changes in Primary Prostate Cancer
GEO Series GSE164347. Homo sapiens. 34 samples. Type: Other.
Altered chromatin topologies caused by balanced chromosomal translocation lead to central iris hypoplasia [RNA-Seq]
GEO Series GSE266515. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
A topological atlas reveals layers of genome reorganization in colorectal cancer
GEO Series GSE133928. Homo sapiens. 175 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other.
BRWD1 orchestrates chromatin topology by converting static to dynamic cohesin complexes
GEO Series GSE221519. Mus musculus. 46 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
NPM1 mutation reprograms leukemic transcription network via reshaping TAD topology
GEO Series GSE208022. Homo sapiens; Mus. 32 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [RNA-seq]
GEO Series GSE98440. Homo sapiens. 26 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.